Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0001062

Physical Location & Seq

Genomic Coordinates Forward (+)

9640233 .. 9641308

Gene Structure 1076 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G166200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGGAGCCCAAGGGATTATTTTTGTACTATAAGAGCAAAAACTCCCCAAAGTCACTACTCTACTCTCAATTGATCACCATTCAAGAGGGCTCATTAGATCATGTCACCTTGAATAGCAACCCGGAAACGGATGAGGGTTATGTTTATGACCTAACCCTAGAGTATCAAGCGGCCAACTCTTCCACGGGTGGAAATATCTTTCTAGATGTACCCAAATTCAACAGCACATTGACGTACCTCAGGCTTGGAATTGATGGAAACATCAAGCTTTATACTTACTATGACAAGGTAAATTCATGGGAGCAGACCTTCACACTTTTCGACAGAGATTCGGTGTGGGAGACTGAGTGCCAGCTTCCGTCTAGATGTGGAGACTTTGGCGTTTGTGAGGACAACCAATGTGTTGCTTGTCCATTGGCTAAAGGGCTTTTGGGTTGGAACAAGACTTGTGAGCCTGAGAAGGTAACTTCTTGTAAGGCAACGAGCTTCCACTACTACAAGGTTGAAGGAGTTGATTATTTCTTAAGCAAGTACACCAGGGGATCTTCTACCAAGGAGATCGATTGTGGTAACAAGTGTACTTCGGATTGCAAGTGTTTGGGATACTTTTACAACCAAGATACGTCAAGGTGTTGGATCGCTTATGATTTGAAAACCTTGACCAAAGTTGCCAATTCCACTCACGTGGCTTACATTAAGGCACCTAATCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005829 GO:0006810 GO:0006833 GO:0008150 GO:0009505 GO:0012505 GO:0016020 GO:0030312 GO:0031090 GO:0042044 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0051179 GO:0051234 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin PAN_2 S_locus_glycop

Protein Analysis

238

Amino Acids

26.89

Weight (kDa)

5.61

Isoelectric Point (pI)

41.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001062)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78850 AT1G78860
fragaria_vesca	FvH4_3g18371 FvH4_3g18380 FvH4_3g18383 FvH4_3g18410
malus_domestica	MD03G1242400.v1.1 MD11G1262100.v1.1 MD11G1262300.v1.1 MD11G1262400.v1.1 MD11G1262600.v1.1
prunus_persica	Prupe.4G165600_v2.0.a1 Prupe.4G166000_v2.0.a1 Prupe.4G166100_v2.0.a1 Prupe.4G166200_v2.0.a1
pyrus_communis	pycom11g23110 pycom11g23150
rosa_chinensis	RchiOBHm_Chr5g0031021 RchiOBHm_Chr5g0031031 RchiOBHm_Chr5g0031081 RchiOBHm_Chr5g0031091 RchiOBHm_Chr5g0031131 RchiOBHm_Chr5g0031141
rosa_laevigata	RLG00000033282 RLG00000033283 RLG00000033284 RLG00000033285
rosa_multiflora	Rmu_co8472871.1_g000001 Rmu_co8500049.1_g000001 Rmu_sc0001523.1_g000001 Rmu_sc0005489.1_g000008 Rmu_sc0020175.1_g000004 Rmu_sc0023422.1_g000001 Rmu_sc0023423.1_g000001
rosa_roxburghii	Rroxscaffold_1G00049150 Rroxscaffold_1G00049170 Rroxscaffold_1G00049190 Rroxscaffold_1G00049200 Rroxscaffold_1G00049210 Rroxscaffold_1G00049240
rosa_rugosa	Rorug05G0122300 Rorug05G0122400 Rorug05G0122500
rosa_samantha	Rh5AG215600 Rh5AG215700 Rh5AG216000 Rh5BG214800 Rh5BG214900 Rh5BG215000 Rh5BG215500 Rh5CG238900 Rh5DG219300 Rh5DG219400 Rh5DG219600 Rh5DG219900 Rh5DG220100
rosa_wichuraiana	Rw5G019730 Rw5G019740 Rw5G019750 Rw5G019760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	700
AciI	CCGC	1 cut(s)	170
AclWI	GGATC	2 cut(s)	550, 644
AcoI	YGGCCR	1 cut(s)	171
AcsI	RAATTY	2 cut(s)	215, 292
AcvI	CACGTG	1 cut(s)	685
AfaI	GTAC	5 cut(s)	26, 210, 236, 533, 580
AfiI	CCNNNNNNNGG	1 cut(s)	127
AflII	CTTAAG	1 cut(s)	523
AgsI	TTSAA	5 cut(s)	83, 112, 220, 506, 652
AjnI	CCWGG	1 cut(s)	536
AleI	CACNNNNGTG	1 cut(s)	683
AluBI	AGCT	3 cut(s)	268, 355, 486
AluI	AGCT	3 cut(s)	268, 355, 486
Alw26I	GTCTC	2 cut(s)	335, 366
AlwI	GGATC	2 cut(s)	550, 644
AoxI	GGCC	1 cut(s)	171
ApoI	RAATTY	2 cut(s)	215, 292
AsuC2I	CCSGG	1 cut(s)	122
AsuHPI	GGTGA	2 cut(s)	67, 97
AxyI	CCTNAGG	1 cut(s)	239
BanI	GGYRCC	1 cut(s)	700
BanII	GRGCYC	2 cut(s)	9, 92
BbrPI	CACGTG	1 cut(s)	685
BccI	CCATC	1 cut(s)	248
BciT130I	CCWGG	1 cut(s)	538
BciVI	GTATCC	1 cut(s)	596
BclI	TGATCA	1 cut(s)	72
BcnI	CCSGG	1 cut(s)	122
BcoDI	GTCTC	2 cut(s)	335, 366
BfaI	CTAG	3 cut(s)	158, 203, 363
BfrI	CTTAAG	1 cut(s)	523
BfuI	GTATCC	1 cut(s)	596
BisI	GCNGC	1 cut(s)	171
BlsI	GCNGC	1 cut(s)	172
Bme1390I	CCNGG	2 cut(s)	122, 538
BmiI	GGNNCC	2 cut(s)	6, 702
BmrFI	CCNGG	2 cut(s)	122, 538
BpuMI	CCSGG	1 cut(s)	122
Bsa29I	ATCGAT	1 cut(s)	561
BsaAI	YACGTR	1 cut(s)	685
BsaJI	CCNNGG	4 cut(s)	9, 183, 537, 552
BsaXI	ACNNNNNCTCC	2 cut(s)	332, 362
Bsc4I	CCNNNNNNNGG	1 cut(s)	127
Bse21I	CCTNAGG	1 cut(s)	239
BseBI	CCWGG	1 cut(s)	538
BseCI	ATCGAT	1 cut(s)	561
BseDI	CCNNGG	4 cut(s)	9, 183, 537, 552
BseGI	GGATG	1 cut(s)	136
BseLI	CCNNNNNNNGG	1 cut(s)	127
BseMII	CTCAG	3 cut(s)	253, 336, 447
BshFI	GGCC	1 cut(s)	173
BshNI	GGYRCC	1 cut(s)	700
BshVI	ATCGAT	1 cut(s)	561
BsiSI	CCGG	1 cut(s)	122
BslI	CCNNNNNNNGG	1 cut(s)	127
BsmAI	GTCTC	2 cut(s)	335, 366
BsnI	GGCC	1 cut(s)	173
Bsp1286I	GDGCHC	2 cut(s)	9, 92
Bsp143I	GATC	5 cut(s)	72, 97, 542, 558, 636
BspACI	CCGC	1 cut(s)	170
BspANI	GGCC	1 cut(s)	173
BspCNI	CTCAG	3 cut(s)	252, 337, 448
BspDI	ATCGAT	1 cut(s)	561
BspLI	GGNNCC	2 cut(s)	6, 702
BspPI	GGATC	2 cut(s)	550, 644
BspT107I	GGYRCC	1 cut(s)	700
BspTI	CTTAAG	1 cut(s)	523
BssECI	CCNNGG	4 cut(s)	9, 183, 537, 552
BssMI	GATC	5 cut(s)	72, 97, 542, 558, 636
BssT1I	CCWWGG	2 cut(s)	9, 552
Bst2UI	CCWGG	1 cut(s)	538
Bst6I	CTCTTC	1 cut(s)	184
BstAFI	CTTAAG	1 cut(s)	523
BstBAI	YACGTR	1 cut(s)	685
BstC8I	GCNNGC	1 cut(s)	353
BstDEI	CTNAG	3 cut(s)	239, 345, 456
BstDSI	CCRYGG	1 cut(s)	183
BstF5I	GGATG	1 cut(s)	136
BstKTI	GATC	5 cut(s)	75, 100, 545, 561, 639
BstMAI	GTCTC	2 cut(s)	335, 366
BstMBI	GATC	5 cut(s)	72, 97, 542, 558, 636
BstNI	CCWGG	1 cut(s)	538
BstSCI	CCNGG	2 cut(s)	120, 536
BstX2I	RGATCY	1 cut(s)	542
BstXI	CCANNNNNNTGG	1 cut(s)	685
BstYI	RGATCY	1 cut(s)	542
Bsu15I	ATCGAT	1 cut(s)	561
Bsu36I	CCTNAGG	1 cut(s)	239
BsuI	GTATCC	1 cut(s)	596
BsuRI	GGCC	1 cut(s)	173
BsuTUI	ATCGAT	1 cut(s)	561
BtgI	CCRYGG	1 cut(s)	183
BtsCI	GGATG	1 cut(s)	136
Cac8I	GCNNGC	1 cut(s)	353
ClaI	ATCGAT	1 cut(s)	561
Csp6I	GTAC	5 cut(s)	25, 209, 235, 532, 579
CviAII	CATG	2 cut(s)	101, 297
CviQI	GTAC	5 cut(s)	25, 209, 235, 532, 579
DdeI	CTNAG	3 cut(s)	239, 345, 456
DpnI	GATC	5 cut(s)	74, 99, 544, 560, 638
DpnII	GATC	5 cut(s)	72, 97, 542, 558, 636
EaeI	YGGCCR	1 cut(s)	171
Eam1104I	CTCTTC	1 cut(s)	184
EarI	CTCTTC	1 cut(s)	184
Eco130I	CCWWGG	2 cut(s)	9, 552
Eco24I	GRGCYC	2 cut(s)	9, 92
Eco72I	CACGTG	1 cut(s)	685
Eco81I	CCTNAGG	1 cut(s)	239
EcoRII	CCWGG	1 cut(s)	536
EcoT14I	CCWWGG	2 cut(s)	9, 552
EcoT38I	GRGCYC	2 cut(s)	9, 92
ErhI	CCWWGG	2 cut(s)	9, 552
FaeI	CATG	2 cut(s)	104, 300
FaiI	YATR	8 cut(s)	30, 102, 141, 147, 273, 282, 298, 645
FatI	CATG	2 cut(s)	100, 296
FbaI	TGATCA	1 cut(s)	72
Fnu4HI	GCNGC	1 cut(s)	171
FokI	GGATG	1 cut(s)	143
FriOI	GRGCYC	2 cut(s)	9, 92
Fsp4HI	GCNGC	1 cut(s)	171
FspBI	CTAG	3 cut(s)	158, 203, 363
GluI	GCNGC	1 cut(s)	171
HaeIII	GGCC	1 cut(s)	173
HapII	CCGG	1 cut(s)	122
Hin1II	CATG	2 cut(s)	104, 300
HindIII	AAGCTT	1 cut(s)	266
HinfI	GANTC	1 cut(s)	329
HpaII	CCGG	1 cut(s)	122
HphI	GGTGA	2 cut(s)	67, 97
Hpy166II	GTNNAC	2 cut(s)	534, 579
Hpy188I	TCNGA	1 cut(s)	586
Hpy188III	TCNNGA	3 cut(s)	83, 203, 363
Hpy8I	GTNNAC	2 cut(s)	534, 579
HpyAV	CCTTC	3 cut(s)	319, 454, 500
HpyCH4IV	ACGT	3 cut(s)	233, 623, 684
HpyCH4V	TGCA	1 cut(s)	591
HpyF3I	CTNAG	3 cut(s)	239, 345, 456
HpySE526I	ACGT	3 cut(s)	233, 623, 684
Hsp92II	CATG	2 cut(s)	104, 300
Ksp22I	TGATCA	1 cut(s)	72
Kzo9I	GATC	5 cut(s)	72, 97, 542, 558, 636
LmnI	GCTCC	2 cut(s)	4, 301
LpnPI	CCDG	6 cut(s)	135, 226, 365, 468, 523, 550
MaeI	CTAG	3 cut(s)	158, 203, 363
MaeII	ACGT	3 cut(s)	233, 623, 684
MaeIII	GTNAC	4 cut(s)	51, 103, 463, 569
MalI	GATC	5 cut(s)	74, 99, 544, 560, 638
MboI	GATC	5 cut(s)	72, 97, 542, 558, 636
MboII	GAAGA	2 cut(s)	171, 537
MfeI	CAATTG	1 cut(s)	68
MflI	RGATCY	1 cut(s)	542
MhlI	GDGCHC	2 cut(s)	9, 92
MluCI	AATT	5 cut(s)	68, 215, 249, 292, 673
MmeI	TCCRAC	2 cut(s)	416, 614
MnlI	CCTC	4 cut(s)	79, 127, 248, 382
MseI	TTAA	2 cut(s)	524, 696
MslI	CAYNNNNRTG	1 cut(s)	683
MspCI	CTTAAG	1 cut(s)	523
MspI	CCGG	1 cut(s)	122
MspR9I	CCNGG	2 cut(s)	122, 538
MunI	CAATTG	1 cut(s)	68
MvaI	CCWGG	1 cut(s)	538
NciI	CCSGG	1 cut(s)	122
NdeII	GATC	5 cut(s)	72, 97, 542, 558, 636
NlaIII	CATG	2 cut(s)	104, 300
NlaIV	GGNNCC	2 cut(s)	6, 702
NmuCI	GTSAC	2 cut(s)	51, 103
OliI	CACNNNNGTG	1 cut(s)	683
PfeI	GAWTC	1 cut(s)	329
PkrI	GCNGC	1 cut(s)	172
PmaCI	CACGTG	1 cut(s)	685
PmlI	CACGTG	1 cut(s)	685
Ppu21I	YACGTR	1 cut(s)	685
Psp6I	CCWGG	1 cut(s)	536
PspCI	CACGTG	1 cut(s)	685
PspGI	CCWGG	1 cut(s)	536
PspN4I	GGNNCC	2 cut(s)	6, 702
PsuI	RGATCY	1 cut(s)	542
RsaI	GTAC	5 cut(s)	26, 210, 236, 533, 580
RsaNI	GTAC	5 cut(s)	25, 209, 235, 532, 579
RseI	CAYNNNNRTG	1 cut(s)	683
SaqAI	TTAA	2 cut(s)	524, 696
SatI	GCNGC	1 cut(s)	171
Sau3AI	GATC	5 cut(s)	72, 97, 542, 558, 636
ScrFI	CCNGG	2 cut(s)	122, 538
SduI	GDGCHC	2 cut(s)	9, 92
SmiMI	CAYNNNNRTG	1 cut(s)	683
SmlI	CTYRAG	1 cut(s)	523
SmoI	CTYRAG	1 cut(s)	523
Sse9I	AATT	5 cut(s)	68, 215, 249, 292, 673
SsiI	CCGC	1 cut(s)	170
SspMI	CTAG	3 cut(s)	158, 203, 363
StyD4I	CCNGG	2 cut(s)	120, 536
StyI	CCWWGG	2 cut(s)	9, 552
TaiI	ACGT	3 cut(s)	236, 626, 687
TaqI	TCGA	2 cut(s)	321, 561
TasI	AATT	5 cut(s)	68, 215, 249, 292, 673
TatI	WGTACW	3 cut(s)	24, 531, 578
TauI	GCSGC	1 cut(s)	173
TfiI	GAWTC	1 cut(s)	329
Tru1I	TTAA	2 cut(s)	524, 696
Tru9I	TTAA	2 cut(s)	524, 696
TseFI	GTSAC	2 cut(s)	51, 103
Tsp45I	GTSAC	2 cut(s)	51, 103
TspDTI	ATGAA	1 cut(s)	285
TspGWI	ACGGA	2 cut(s)	143, 348
Vha464I	CTTAAG	1 cut(s)	523
XapI	RAATTY	2 cut(s)	215, 292
XbaI	TCTAGA	2 cut(s)	202, 362
XspI	CTAG	3 cut(s)	158, 203, 363

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.