Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0001062

Physical Location & Seq

Genomic Coordinates Reverse (-)

69406344 .. 69407510

Gene Structure 1167 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00049240.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

ATGCTCGATCTCTTTGCCTCCCCCTTCCAATTTGCTTTCTACAACACCACTCCCAACGCCTTCACTCTTGCTCTGCGCATGGGTTTGAGGAGATCTGAATCAAACTTTCATTGGGTTTGGGAGGCCAACCGGGGAAACCCAGTTGGTGAAAATGCCACCTTCACGCTTGGAACCAATGGAAACCTTGTCTTGGCCGATGGTGATGGTCGAGTGGCTTGGCATACCAACACTGTTAACAAAGGGGTGGTAGGCTTCAAGTTGCTTCCAACTGGAAACATGGTTCTTTATAACTCAAAAGGCAAAGACACTCTTGTAGTAGGTCAATCACTACGTGCAGGAGCAGTAAGCAAACTCGTTAGTCGAGCCTCGGAGACTGAAAACAAAGATGGGCCTTATAGCTTGGTGATGGAGCCGAAAGGATTGGCTTTGTACTACAACAGCAAGAACTCTCCAAAGCCATTACTCTACTACAGATCCTCCAAATGGATTGCTGTTCCGAAGGGCTCATTACACCAGGTAACATTGAACGCTTCCCCGGTAGAAGGGGGTCATGCTTATGACCTTACCTTGGAGTACCAACTCGACCGAAATACAATAGCACATCGACTTGCCTTAGGCTCGGAATTGATGGAAATCTCAAGCTTTACACTTACTATGACAAGTTGCGTTTATGGTGCATGGGAGACGACCTTCACTCTCTTTGATAAAGGTTCAGGAATATCTGAAAATGGGTGCCAATTGCCAGAGCGATGTGGGAACTTCGGCCTCTGTGAGAATAACCAATGTGTTGGTTGCCCATTGTCCAAGGGAATTTTGGGTTGGAGTGAGACCTGTGAGCCTGAGAAGCTTACTTCTTGTGGGGCAAAGAGCTTCCACTACTACAAAATTGAAGGGGCTGATCACTTCTTGAGCAAGTACAATAGTGGAGAAGCTGTGAAGGAGCTTGATTGTTCCAACAAGTGTGCTTTGGATTGCAAGTGTTTGGGTTTCTTTTACAACAGGGATGAATCAAGGTGTTGGATTGCTTATGAGTTGAAGACTTTGACCAAAGTTGACAAACCCAGTCATGTTGGTTACATCAAGGCACCCAATCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005829 GO:0006810 GO:0006833 GO:0008150 GO:0009505 GO:0012505 GO:0016020 GO:0030312 GO:0031090 GO:0042044 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0051179 GO:0051234 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin PAN_2 S_locus_glycop

Protein Analysis

365

Amino Acids

40.31

Weight (kDa)

7.89

Isoelectric Point (pI)

29.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B_lectin	PF01453	39 - 108	4.9e-09	D-mannose binding lectin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001062)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78850 AT1G78860
fragaria_vesca	FvH4_3g18371 FvH4_3g18380 FvH4_3g18383 FvH4_3g18410
malus_domestica	MD03G1242400.v1.1 MD11G1262100.v1.1 MD11G1262300.v1.1 MD11G1262400.v1.1 MD11G1262600.v1.1
prunus_persica	Prupe.4G165600_v2.0.a1 Prupe.4G166000_v2.0.a1 Prupe.4G166100_v2.0.a1 Prupe.4G166200_v2.0.a1
pyrus_communis	pycom11g23110 pycom11g23150
rosa_chinensis	RchiOBHm_Chr5g0031021 RchiOBHm_Chr5g0031031 RchiOBHm_Chr5g0031081 RchiOBHm_Chr5g0031091 RchiOBHm_Chr5g0031131 RchiOBHm_Chr5g0031141
rosa_laevigata	RLG00000033282 RLG00000033283 RLG00000033284 RLG00000033285
rosa_multiflora	Rmu_co8472871.1_g000001 Rmu_co8500049.1_g000001 Rmu_sc0001523.1_g000001 Rmu_sc0005489.1_g000008 Rmu_sc0020175.1_g000004 Rmu_sc0023422.1_g000001 Rmu_sc0023423.1_g000001
rosa_roxburghii	Rroxscaffold_1G00049150 Rroxscaffold_1G00049170 Rroxscaffold_1G00049190 Rroxscaffold_1G00049200 Rroxscaffold_1G00049210 Rroxscaffold_1G00049240
rosa_rugosa	Rorug05G0122300 Rorug05G0122400 Rorug05G0122500
rosa_samantha	Rh5AG215600 Rh5AG215700 Rh5AG216000 Rh5BG214800 Rh5BG214900 Rh5BG215000 Rh5BG215500 Rh5CG238900 Rh5DG219300 Rh5DG219400 Rh5DG219600 Rh5DG219900 Rh5DG220100
rosa_wichuraiana	Rw5G019730 Rw5G019740 Rw5G019750 Rw5G019760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	288
Acc16I	TGCGCA	1 cut(s)	77
AccB1I	GGYRCC	2 cut(s)	732, 1084
AclWI	GGATC	1 cut(s)	468
AcoI	YGGCCR	1 cut(s)	192
AcsI	RAATTY	1 cut(s)	810
AdeI	CACNNNGTG	1 cut(s)	332
AfaI	GTAC	3 cut(s)	431, 575, 917
AfiI	CCNNNNNNNGG	4 cut(s)	190, 483, 542, 568
AgsI	TTSAA	4 cut(s)	256, 526, 890, 1036
AjnI	CCWGG	1 cut(s)	513
AjuI	GAANNNNNNNTTGG	2 cut(s)	802, 834
AloI	GAACNNNNNNTCC	2 cut(s)	264, 296
AluBI	AGCT	6 cut(s)	399, 642, 847, 870, 932, 943
AluI	AGCT	6 cut(s)	399, 642, 847, 870, 932, 943
Alw26I	GTCTC	3 cut(s)	365, 677, 821
AlwI	GGATC	1 cut(s)	468
AoxI	GGCC	4 cut(s)	123, 192, 389, 763
ApoI	RAATTY	1 cut(s)	810
AspLEI	GCGC	1 cut(s)	78
AspS9I	GGNCC	1 cut(s)	389
AsuC2I	CCSGG	2 cut(s)	131, 536
AsuHPI	GGTGA	3 cut(s)	158, 212, 415
AxyI	CCTNAGG	1 cut(s)	613
BanI	GGYRCC	2 cut(s)	732, 1084
BanII	GRGCYC	1 cut(s)	506
BbsI	GAAGAC	1 cut(s)	1043
BccI	CCATC	5 cut(s)	191, 197, 380, 400, 622
BcgI	CGANNNNNNTGC	1 cut(s)	30
BciT130I	CCWGG	1 cut(s)	515
BclI	TGATCA	1 cut(s)	898
BcnI	CCSGG	2 cut(s)	131, 536
BcoDI	GTCTC	3 cut(s)	365, 677, 821
BfmI	CTRYAG	1 cut(s)	469
BglII	AGATCT	1 cut(s)	92
Bme1390I	CCNGG	3 cut(s)	131, 515, 536
BmgT120I	GGNCC	1 cut(s)	389
BmiI	GGNNCC	4 cut(s)	172, 411, 734, 1086
BmrFI	CCNGG	3 cut(s)	131, 515, 536
BmrI	ACTGGG	2 cut(s)	134, 1056
BmuI	ACTGGG	2 cut(s)	134, 1056
BpiI	GAAGAC	1 cut(s)	1043
BpuEI	CTTGAG	2 cut(s)	622, 928
BpuMI	CCSGG	2 cut(s)	131, 536
BsaAI	YACGTR	1 cut(s)	332
BsaBI	GATNNNNATC	2 cut(s)	97, 632
BsaI	GGTCTC	1 cut(s)	821
BsaJI	CCNNGG	5 cut(s)	130, 366, 534, 567, 804
BsaXI	ACNNNNNCTCC	4 cut(s)	461, 491, 918, 948
Bsc4I	CCNNNNNNNGG	4 cut(s)	190, 483, 542, 568
Bse1I	ACTGG	3 cut(s)	140, 274, 1062
Bse21I	CCTNAGG	1 cut(s)	613
Bse8I	GATNNNNATC	2 cut(s)	97, 632
BseBI	CCWGG	1 cut(s)	515
BseDI	CCNNGG	5 cut(s)	130, 366, 534, 567, 804
BseGI	GGATG	1 cut(s)	1009
BseJI	GATNNNNATC	2 cut(s)	97, 632
BseLI	CCNNNNNNNGG	4 cut(s)	190, 483, 542, 568
BseMII	CTCAG	1 cut(s)	831
BseNI	ACTGG	3 cut(s)	140, 274, 1062
BseRI	GAGGAG	1 cut(s)	103
BsgI	GTGCAG	1 cut(s)	354
Bsh1285I	CGRYCG	1 cut(s)	586
BshFI	GGCC	4 cut(s)	125, 194, 391, 765
BshNI	GGYRCC	2 cut(s)	732, 1084
BsiEI	CGRYCG	1 cut(s)	586
BsiSI	CCGG	2 cut(s)	130, 536
BslI	CCNNNNNNNGG	4 cut(s)	190, 483, 542, 568
BsmAI	GTCTC	3 cut(s)	365, 677, 821
BsmBI	CGTCTC	1 cut(s)	677
BsnI	GGCC	4 cut(s)	125, 194, 391, 765
Bso31I	GGTCTC	1 cut(s)	821
Bsp1286I	GDGCHC	1 cut(s)	506
Bsp143I	GATC	4 cut(s)	7, 92, 473, 898
BspANI	GGCC	4 cut(s)	125, 194, 391, 765
BspCNI	CTCAG	1 cut(s)	832
BspLI	GGNNCC	4 cut(s)	172, 411, 734, 1086
BspPI	GGATC	1 cut(s)	468
BspT107I	GGYRCC	2 cut(s)	732, 1084
BspTNI	GGTCTC	1 cut(s)	821
BsrI	ACTGG	3 cut(s)	140, 274, 1062
BssECI	CCNNGG	5 cut(s)	130, 366, 534, 567, 804
BssMI	GATC	4 cut(s)	7, 92, 473, 898
BssT1I	CCWWGG	2 cut(s)	567, 804
Bst2UI	CCWGG	1 cut(s)	515
Bst4CI	ACNGT	1 cut(s)	232
BstBAI	YACGTR	1 cut(s)	332
BstDEI	CTNAG	2 cut(s)	613, 840
BstF5I	GGATG	1 cut(s)	1009
BstHHI	GCGC	1 cut(s)	78
BstKTI	GATC	4 cut(s)	10, 95, 476, 901
BstMAI	GTCTC	3 cut(s)	365, 677, 821
BstMBI	GATC	4 cut(s)	7, 92, 473, 898
BstMCI	CGRYCG	1 cut(s)	586
BstMWI	GCNNNNNNNGC	1 cut(s)	844
BstNI	CCWGG	1 cut(s)	515
BstSCI	CCNGG	3 cut(s)	129, 513, 534
BstSFI	CTRYAG	1 cut(s)	469
BstV2I	GAAGAC	1 cut(s)	1043
BstX2I	RGATCY	2 cut(s)	92, 473
BstXI	CCANNNNNNTGG	1 cut(s)	788
BstYI	RGATCY	2 cut(s)	92, 473
Bsu36I	CCTNAGG	1 cut(s)	613
BsuRI	GGCC	4 cut(s)	125, 194, 391, 765
BtgZI	GCGATG	1 cut(s)	763
BtsCI	GGATG	1 cut(s)	1009
BtsIMutI	CAGTG	2 cut(s)	228, 1093
CfoI	GCGC	1 cut(s)	78
Cfr13I	GGNCC	1 cut(s)	389
CsiI	ACCWGGT	1 cut(s)	513
Csp6I	GTAC	3 cut(s)	430, 574, 916
CviAII	CATG	5 cut(s)	79, 277, 551, 678, 1067
CviQI	GTAC	3 cut(s)	430, 574, 916
DdeI	CTNAG	2 cut(s)	613, 840
DpnI	GATC	4 cut(s)	9, 94, 475, 900
DpnII	GATC	4 cut(s)	7, 92, 473, 898
DraIII	CACNNNGTG	1 cut(s)	332
EaeI	YGGCCR	1 cut(s)	192
Eco130I	CCWWGG	2 cut(s)	567, 804
Eco24I	GRGCYC	1 cut(s)	506
Eco31I	GGTCTC	1 cut(s)	821
Eco81I	CCTNAGG	1 cut(s)	613
EcoRII	CCWGG	1 cut(s)	513
EcoT14I	CCWWGG	2 cut(s)	567, 804
EcoT38I	GRGCYC	1 cut(s)	506
ErhI	CCWWGG	2 cut(s)	567, 804
Esp3I	CGTCTC	1 cut(s)	677
FaeI	CATG	5 cut(s)	82, 280, 554, 681, 1070
FalI	AAGNNNNNCTT	2 cut(s)	294, 326
FatI	CATG	5 cut(s)	78, 276, 550, 677, 1066
FbaI	TGATCA	1 cut(s)	898
FokI	GGATG	1 cut(s)	1016
FriOI	GRGCYC	1 cut(s)	506
FspI	TGCGCA	1 cut(s)	77
GlaI	GCGC	1 cut(s)	77
HaeIII	GGCC	4 cut(s)	125, 194, 391, 765
HapII	CCGG	2 cut(s)	130, 536
HhaI	GCGC	1 cut(s)	78
Hin1II	CATG	5 cut(s)	82, 280, 554, 681, 1070
Hin6I	GCGC	1 cut(s)	76
HinP1I	GCGC	1 cut(s)	76
HincII	GTYRAC	2 cut(s)	235, 1054
HindII	GTYRAC	2 cut(s)	235, 1054
HindIII	AAGCTT	2 cut(s)	640, 845
HinfI	GANTC	2 cut(s)	98, 1007
HpaI	GTTAAC	1 cut(s)	235
HpaII	CCGG	2 cut(s)	130, 536
HphI	GGTGA	3 cut(s)	158, 212, 415
Hpy166II	GTNNAC	2 cut(s)	235, 1054
Hpy188I	TCNGA	5 cut(s)	97, 370, 498, 622, 724
Hpy188III	TCNNGA	2 cut(s)	714, 907
Hpy8I	GTNNAC	2 cut(s)	235, 1054
HpyAV	CCTTC	8 cut(s)	34, 70, 169, 493, 536, 700, 884, 931
HpyCH4III	ACNGT	1 cut(s)	232
HpyCH4IV	ACGT	1 cut(s)	331
HpyCH4V	TGCA	3 cut(s)	335, 677, 975
HpyF10VI	GCNNNNNNNGC	1 cut(s)	844
HpyF3I	CTNAG	2 cut(s)	613, 840
HpySE526I	ACGT	1 cut(s)	331
Hsp92II	CATG	5 cut(s)	82, 280, 554, 681, 1070
HspAI	GCGC	1 cut(s)	76
Ksp22I	TGATCA	1 cut(s)	898
KspAI	GTTAAC	1 cut(s)	235
Kzo9I	GATC	4 cut(s)	7, 92, 473, 898
LmnI	GCTCC	3 cut(s)	338, 409, 940
MabI	ACCWGGT	1 cut(s)	513
MaeII	ACGT	1 cut(s)	331
MaeIII	GTNAC	2 cut(s)	517, 1073
MalI	GATC	4 cut(s)	9, 94, 475, 900
MboI	GATC	4 cut(s)	7, 92, 473, 898
MboII	GAAGA	1 cut(s)	1048
MfeI	CAATTG	1 cut(s)	737
MflI	RGATCY	2 cut(s)	92, 473
MhlI	GDGCHC	1 cut(s)	506
MluCI	AATT	5 cut(s)	29, 623, 737, 810, 885
MmeI	TCCRAC	4 cut(s)	290, 800, 978, 998
MnlI	CCTC	6 cut(s)	28, 81, 115, 376, 487, 776
MseI	TTAA	1 cut(s)	234
MslI	CAYNNNNRTG	1 cut(s)	555
MspI	CCGG	2 cut(s)	130, 536
MspR9I	CCNGG	3 cut(s)	131, 515, 536
MunI	CAATTG	1 cut(s)	737
MvaI	CCWGG	1 cut(s)	515
MwoI	GCNNNNNNNGC	1 cut(s)	844
NciI	CCSGG	2 cut(s)	131, 536
NdeII	GATC	4 cut(s)	7, 92, 473, 898
NlaIII	CATG	5 cut(s)	82, 280, 554, 681, 1070
NlaIV	GGNNCC	4 cut(s)	172, 411, 734, 1086
NsbI	TGCGCA	1 cut(s)	77
PfeI	GAWTC	2 cut(s)	98, 1007
Ppu21I	YACGTR	1 cut(s)	332
PsiI	TTATAA	1 cut(s)	288
Psp6I	CCWGG	1 cut(s)	513
PspGI	CCWGG	1 cut(s)	513
PspN4I	GGNNCC	4 cut(s)	172, 411, 734, 1086
PspPI	GGNCC	1 cut(s)	389
PsuI	RGATCY	2 cut(s)	92, 473
RsaI	GTAC	3 cut(s)	431, 575, 917
RsaNI	GTAC	3 cut(s)	430, 574, 916
RseI	CAYNNNNRTG	1 cut(s)	555
SaqAI	TTAA	1 cut(s)	234
Sau3AI	GATC	4 cut(s)	7, 92, 473, 898
Sau96I	GGNCC	1 cut(s)	389
ScrFI	CCNGG	3 cut(s)	131, 515, 536
SduI	GDGCHC	1 cut(s)	506
SexAI	ACCWGGT	1 cut(s)	513
SfcI	CTRYAG	1 cut(s)	469
SmiMI	CAYNNNNRTG	1 cut(s)	555
SmlI	CTYRAG	2 cut(s)	637, 907
SmoI	CTYRAG	2 cut(s)	637, 907
Sse9I	AATT	5 cut(s)	29, 623, 737, 810, 885
StyD4I	CCNGG	3 cut(s)	129, 513, 534
StyI	CCWWGG	2 cut(s)	567, 804
TaaI	ACNGT	1 cut(s)	232
TaiI	ACGT	1 cut(s)	334
TaqI	TCGA	5 cut(s)	6, 208, 361, 582, 604
TaqII	GACCGA	1 cut(s)	600
TasI	AATT	5 cut(s)	29, 623, 737, 810, 885
TatI	WGTACW	2 cut(s)	429, 915
TfiI	GAWTC	2 cut(s)	98, 1007
Tru1I	TTAA	1 cut(s)	234
Tru9I	TTAA	1 cut(s)	234
TscAI	CASTG	1 cut(s)	235
TspDTI	ATGAA	2 cut(s)	98, 1020
TspRI	CASTG	1 cut(s)	235
XapI	RAATTY	1 cut(s)	810
XcmI	CCANNNNNNNNNTGG	1 cut(s)	811

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.