Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0001062

Physical Location & Seq

Genomic Coordinates Forward (+)

9634891 .. 9635565

Gene Structure 675 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G166100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGTCTTCCCCTACATTTACCATGCCATTGCTCTCCTTATTATTCTTCTTCTCGATCTTTTGTATCATTGCTCAGGCTCAAGTTCCTGCCAATGAAACTTTCAAGCTTGTCAACGAGGGAGAATTCGGGCCTTATGTTGTGGAATATTTTGGAGATTATCGTATGCTGCCTGATGTCTTTAACTCCCCCTTCCAGCTTGGCTTCTACAACACCACCCCTAATGCCTTCACTCTTGCTCTACGCATGGGTTTGGTGCGTTCTGAGTCACTCATGCGTTGGGTTTGGGAGGCCAACCGAGGTAACCCAGTTGGCGAAAACGCCACCCTCACGTTCGGGACAGATGGCAACCTTGTATTGGCGGATGCGGATGGCCGAGTGTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005829 GO:0006810 GO:0006833 GO:0008150 GO:0009505 GO:0012505 GO:0016020 GO:0030312 GO:0031090 GO:0042044 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0051179 GO:0051234 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin PAN_2 S_locus_glycop

Protein Analysis

128

Amino Acids

14.2

Weight (kDa)

4.45

Isoelectric Point (pI)

38.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001062)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78850 AT1G78860
fragaria_vesca	FvH4_3g18371 FvH4_3g18380 FvH4_3g18383 FvH4_3g18410
malus_domestica	MD03G1242400.v1.1 MD11G1262100.v1.1 MD11G1262300.v1.1 MD11G1262400.v1.1 MD11G1262600.v1.1
prunus_persica	Prupe.4G165600_v2.0.a1 Prupe.4G166000_v2.0.a1 Prupe.4G166100_v2.0.a1 Prupe.4G166200_v2.0.a1
pyrus_communis	pycom11g23110 pycom11g23150
rosa_chinensis	RchiOBHm_Chr5g0031021 RchiOBHm_Chr5g0031031 RchiOBHm_Chr5g0031081 RchiOBHm_Chr5g0031091 RchiOBHm_Chr5g0031131 RchiOBHm_Chr5g0031141
rosa_laevigata	RLG00000033282 RLG00000033283 RLG00000033284 RLG00000033285
rosa_multiflora	Rmu_co8472871.1_g000001 Rmu_co8500049.1_g000001 Rmu_sc0001523.1_g000001 Rmu_sc0005489.1_g000008 Rmu_sc0020175.1_g000004 Rmu_sc0023422.1_g000001 Rmu_sc0023423.1_g000001
rosa_roxburghii	Rroxscaffold_1G00049150 Rroxscaffold_1G00049170 Rroxscaffold_1G00049190 Rroxscaffold_1G00049200 Rroxscaffold_1G00049210 Rroxscaffold_1G00049240
rosa_rugosa	Rorug05G0122300 Rorug05G0122400 Rorug05G0122500
rosa_samantha	Rh5AG215600 Rh5AG215700 Rh5AG216000 Rh5BG214800 Rh5BG214900 Rh5BG215000 Rh5BG215500 Rh5CG238900 Rh5DG219300 Rh5DG219400 Rh5DG219600 Rh5DG219900 Rh5DG220100
rosa_wichuraiana	Rw5G019730 Rw5G019740 Rw5G019750 Rw5G019760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	359, 365
AcoI	YGGCCR	1 cut(s)	370
AcsI	RAATTY	1 cut(s)	122
AfiI	CCNNNNNNNGG	1 cut(s)	355
AgsI	TTSAA	1 cut(s)	103
AjuI	GAANNNNNNNTTGG	2 cut(s)	83, 115
AluBI	AGCT	2 cut(s)	106, 196
AluI	AGCT	2 cut(s)	106, 196
AoxI	GGCC	3 cut(s)	128, 288, 370
ApeKI	GCWGC	1 cut(s)	166
ApoI	RAATTY	1 cut(s)	122
AspS9I	GGNCC	1 cut(s)	128
BbvI	GCAGC	1 cut(s)	153
BccI	CCATC	2 cut(s)	335, 362
BisI	GCNGC	1 cut(s)	167
BlsI	GCNGC	1 cut(s)	168
BmgT120I	GGNCC	1 cut(s)	128
BmrI	ACTGGG	1 cut(s)	299
BmsI	GCATC	1 cut(s)	352
BmuI	ACTGGG	1 cut(s)	299
Bpu10I	CCTNAGC	1 cut(s)	72
BpuEI	CTTGAG	1 cut(s)	63
BsaJI	CCNNGG	1 cut(s)	295
Bsc4I	CCNNNNNNNGG	1 cut(s)	355
Bse1I	ACTGG	1 cut(s)	305
Bse3DI	GCAATG	2 cut(s)	26, 66
BseDI	CCNNGG	1 cut(s)	295
BseGI	GGATG	2 cut(s)	367, 373
BseLI	CCNNNNNNNGG	1 cut(s)	355
BseMI	GCAATG	2 cut(s)	26, 66
BseMII	CTCAG	2 cut(s)	86, 252
BseNI	ACTGG	1 cut(s)	305
BseXI	GCAGC	1 cut(s)	153
BshFI	GGCC	3 cut(s)	130, 290, 372
BslFI	GGGAC	1 cut(s)	349
BslI	CCNNNNNNNGG	1 cut(s)	355
BsmFI	GGGAC	1 cut(s)	349
BsnI	GGCC	3 cut(s)	130, 290, 372
Bsp143I	GATC	1 cut(s)	54
BspACI	CCGC	2 cut(s)	359, 365
BspANI	GGCC	3 cut(s)	130, 290, 372
BspCNI	CTCAG	2 cut(s)	85, 253
BsrDI	GCAATG	2 cut(s)	26, 66
BsrI	ACTGG	1 cut(s)	305
BssECI	CCNNGG	1 cut(s)	295
BssMI	GATC	1 cut(s)	54
BstDEI	CTNAG	2 cut(s)	72, 261
BstEII	GGTNACC	1 cut(s)	299
BstF5I	GGATG	2 cut(s)	367, 373
BstKTI	GATC	1 cut(s)	57
BstMBI	GATC	1 cut(s)	54
BstPI	GGTNACC	1 cut(s)	299
BstV1I	GCAGC	1 cut(s)	153
BsuRI	GGCC	3 cut(s)	130, 290, 372
BtsCI	GGATG	2 cut(s)	367, 373
Cfr13I	GGNCC	1 cut(s)	128
CviAII	CATG	3 cut(s)	22, 244, 271
CviJI	RGCY	7 cut(s)	77, 106, 130, 196, 201, 290, 372
CviKI_1	RGCY	7 cut(s)	77, 106, 130, 196, 201, 290, 372
DdeI	CTNAG	2 cut(s)	72, 261
DpnI	GATC	1 cut(s)	56
DpnII	GATC	1 cut(s)	54
EaeI	YGGCCR	1 cut(s)	370
EciI	GGCGGA	1 cut(s)	374
Eco91I	GGTNACC	1 cut(s)	299
EcoO65I	GGTNACC	1 cut(s)	299
EcoRI	GAATTC	1 cut(s)	122
FaeI	CATG	3 cut(s)	25, 247, 274
FaiI	YATR	5 cut(s)	23, 135, 164, 245, 272
FaqI	GGGAC	1 cut(s)	349
FatI	CATG	3 cut(s)	21, 243, 270
Fnu4HI	GCNGC	1 cut(s)	167
FokI	GGATG	2 cut(s)	374, 380
Fsp4HI	GCNGC	1 cut(s)	167
GluI	GCNGC	1 cut(s)	167
HaeIII	GGCC	3 cut(s)	130, 290, 372
Hin1II	CATG	3 cut(s)	25, 247, 274
HincII	GTYRAC	1 cut(s)	112
HindII	GTYRAC	1 cut(s)	112
HindIII	AAGCTT	1 cut(s)	104
HinfI	GANTC	1 cut(s)	263
Hpy166II	GTNNAC	1 cut(s)	112
Hpy188I	TCNGA	1 cut(s)	262
Hpy188III	TCNNGA	2 cut(s)	52, 334
Hpy8I	GTNNAC	1 cut(s)	112
HpyAV	CCTTC	2 cut(s)	199, 235
HpyCH4IV	ACGT	1 cut(s)	329
HpyF3I	CTNAG	2 cut(s)	72, 261
HpySE526I	ACGT	1 cut(s)	329
Hsp92II	CATG	3 cut(s)	25, 247, 274
Kzo9I	GATC	1 cut(s)	54
LpnPI	CCDG	5 cut(s)	59, 99, 183, 206, 318
Lsp1109I	GCAGC	1 cut(s)	153
LweI	GCATC	1 cut(s)	352
MaeII	ACGT	1 cut(s)	329
MaeIII	GTNAC	2 cut(s)	264, 299
MalI	GATC	1 cut(s)	56
MboI	GATC	1 cut(s)	54
MboII	GAAGA	2 cut(s)	37, 40
MluCI	AATT	1 cut(s)	122
MlyI	GAGTC	1 cut(s)	272
MnlI	CCTC	4 cut(s)	109, 280, 290, 335
MseI	TTAA	1 cut(s)	180
NdeII	GATC	1 cut(s)	54
NlaIII	CATG	3 cut(s)	25, 247, 274
NmuCI	GTSAC	1 cut(s)	264
PkrI	GCNGC	1 cut(s)	168
PleI	GAGTC	1 cut(s)	271
PpsI	GAGTC	1 cut(s)	271
PspEI	GGTNACC	1 cut(s)	299
PspPI	GGNCC	1 cut(s)	128
SaqAI	TTAA	1 cut(s)	180
SatI	GCNGC	1 cut(s)	167
Sau3AI	GATC	1 cut(s)	54
Sau96I	GGNCC	1 cut(s)	128
SchI	GAGTC	1 cut(s)	272
SetI	ASST	5 cut(s)	108, 198, 301, 332, 351
SfaNI	GCATC	1 cut(s)	352
SmlI	CTYRAG	1 cut(s)	78
SmoI	CTYRAG	1 cut(s)	78
Sse9I	AATT	1 cut(s)	122
SsiI	CCGC	2 cut(s)	359, 365
SspI	AATATT	1 cut(s)	146
TaiI	ACGT	1 cut(s)	332
TaqI	TCGA	1 cut(s)	53
TasI	AATT	1 cut(s)	122
Tru1I	TTAA	1 cut(s)	180
Tru9I	TTAA	1 cut(s)	180
TseFI	GTSAC	1 cut(s)	264
TseI	GCWGC	1 cut(s)	166
Tsp45I	GTSAC	1 cut(s)	264
TspDTI	ATGAA	1 cut(s)	108
XapI	RAATTY	1 cut(s)	122

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.