Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0001062

Physical Location & Seq

Genomic Coordinates Reverse (-)

69372485 .. 69373522

Gene Structure 1038 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00049200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

ATGACATTGTTCTCGCCTATTCCTCTTCTCACTATTTGCTCTCATTGCGCAAGCTTAAGTTCCTGCCACCGAAACTTCAAGTTTGTCGAGAGCGGCGAATTTGGCCCTTACATTGTAGAGTATGATGGAGACTATCGAATGCTTGGAATTTTCAATGCCCCTTTCCGACTTGGCTTCTACAACGCCACCCCAAATGCCTTCACCCTCGCTCTTCGTATGGGCGTGACTTGTTCGGAGTCACTCTTCCGTTGGGTTTGGTCAAAATGCCACCCTCACATTTGGGCCAAAGGGGAACCTCGTCTTGGCCCAGGCCGATGGCCGGGTGGCTTGGCAAACCAACACTGCCAACAAAGGTGTGATAGGCCTCAAGTTGCTTCCGACCGGAAACATGGTTATGTACAACTCGAAGGGAGATTCCCGACGGATACTTTGTTGGTGGATCAATCTCTGAAGGCCGGAAAAAAAAGCAAGCTCGTTAGTCGGGCCTCGGGGAAGAAAACAAAGACGGGGTTTATAGCTTGGTATTGGATCCCAATCGATTTTTTTTTGTACTACAAGAGCAGTAGTTCTCCTAAGCCATTACCCTACTACAGATTCTTTGACAAGAGTCCGGTTGATCAAGTGACATTAAATTGCGCCCCCGAGCGGATGGAGGTTCGTGCTTATTTTATATCGTTATATTACTCATTGACCAATTCTTCGGCAGGTGGAGTCAATCTATCCAGACCCAAATACAATACCACCTCGTCAATCCTTAGGCTTGGAATCGATGGCAATGTTAGGATTTACGCTTACGACGACAAGGTTGATTGGGGTGCATGGGAAATAACCTTCACTCTTTTCGATCAGGATCTTTACTGGAGGCAAAGCGAGTGCCAAATGCCGGAGAAATGTGGGAGCTTCGGCCTTTGTGAGGACAGCCAATGTGTTGCTTGCCCATCATGGAAAGGACTATCGCGTTATAGCAAAACTTGTGCGCTCGAGAATCTCACTTCTTGTGATGCAAAGAGCTTCCACTACTACAAAGTTGAAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005829 GO:0006810 GO:0006833 GO:0008150 GO:0009505 GO:0012505 GO:0016020 GO:0030312 GO:0031090 GO:0042044 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0051179 GO:0051234 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin PAN_2 S_locus_glycop

Protein Analysis

345

Amino Acids

39.39

Weight (kDa)

8.86

Isoelectric Point (pI)

43.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001062)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78850 AT1G78860
fragaria_vesca	FvH4_3g18371 FvH4_3g18380 FvH4_3g18383 FvH4_3g18410
malus_domestica	MD03G1242400.v1.1 MD11G1262100.v1.1 MD11G1262300.v1.1 MD11G1262400.v1.1 MD11G1262600.v1.1
prunus_persica	Prupe.4G165600_v2.0.a1 Prupe.4G166000_v2.0.a1 Prupe.4G166100_v2.0.a1 Prupe.4G166200_v2.0.a1
pyrus_communis	pycom11g23110 pycom11g23150
rosa_chinensis	RchiOBHm_Chr5g0031021 RchiOBHm_Chr5g0031031 RchiOBHm_Chr5g0031081 RchiOBHm_Chr5g0031091 RchiOBHm_Chr5g0031131 RchiOBHm_Chr5g0031141
rosa_laevigata	RLG00000033282 RLG00000033283 RLG00000033284 RLG00000033285
rosa_multiflora	Rmu_co8472871.1_g000001 Rmu_co8500049.1_g000001 Rmu_sc0001523.1_g000001 Rmu_sc0005489.1_g000008 Rmu_sc0020175.1_g000004 Rmu_sc0023422.1_g000001 Rmu_sc0023423.1_g000001
rosa_roxburghii	Rroxscaffold_1G00049150 Rroxscaffold_1G00049170 Rroxscaffold_1G00049190 Rroxscaffold_1G00049200 Rroxscaffold_1G00049210 Rroxscaffold_1G00049240
rosa_rugosa	Rorug05G0122300 Rorug05G0122400 Rorug05G0122500
rosa_samantha	Rh5AG215600 Rh5AG215700 Rh5AG216000 Rh5BG214800 Rh5BG214900 Rh5BG215000 Rh5BG215500 Rh5CG238900 Rh5DG219300 Rh5DG219400 Rh5DG219600 Rh5DG219900 Rh5DG220100
rosa_wichuraiana	Rw5G019730 Rw5G019740 Rw5G019750 Rw5G019760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	695
Acc16I	TGCGCA	1 cut(s)	49
Acc36I	ACCTGC	1 cut(s)	695
AccBSI	CCGCTC	2 cut(s)	93, 646
AccII	CGCG	1 cut(s)	958
AciI	CCGC	2 cut(s)	93, 646
AclWI	GGATC	4 cut(s)	447, 523, 536, 858
AcoI	YGGCCR	1 cut(s)	317
AcsI	RAATTY	2 cut(s)	98, 147
AcuI	CTGAAG	1 cut(s)	470
AfaI	GTAC	2 cut(s)	399, 551
AfiI	CCNNNNNNNGG	5 cut(s)	302, 319, 645, 883, 913
AflII	CTTAAG	1 cut(s)	55
AgsI	TTSAA	3 cut(s)	79, 154, 1031
AjnI	CCWGG	1 cut(s)	307
AjuI	GAANNNNNNNTTGG	2 cut(s)	285, 317
AluBI	AGCT	5 cut(s)	54, 472, 518, 900, 1011
AluI	AGCT	5 cut(s)	54, 472, 518, 900, 1011
Alw26I	GTCTC	1 cut(s)	123
AlwI	GGATC	4 cut(s)	447, 523, 536, 858
Ama87I	CYCGRG	3 cut(s)	487, 641, 980
AoxI	GGCC	9 cut(s)	103, 282, 304, 310, 317, 362, 453, 483, 904
ApoI	RAATTY	2 cut(s)	98, 147
ArsI	GACNNNNNNTTYG	4 cut(s)	412, 444, 682, 714
AspLEI	GCGC	3 cut(s)	50, 638, 979
AspS9I	GGNCC	4 cut(s)	104, 282, 305, 483
AsuC2I	CCSGG	1 cut(s)	321
AsuHPI	GGTGA	1 cut(s)	193
AvaI	CYCGRG	3 cut(s)	487, 641, 980
AxyI	CCTNAGG	1 cut(s)	755
BamHI	GGATCC	1 cut(s)	528
BccI	CCATC	5 cut(s)	119, 309, 643, 764, 946
BciT130I	CCWGG	1 cut(s)	309
BciVI	GTATCC	1 cut(s)	418
BclI	TGATCA	1 cut(s)	616
BcnI	CCSGG	1 cut(s)	321
BcoDI	GTCTC	1 cut(s)	123
BfmI	CTRYAG	1 cut(s)	589
BfrI	CTTAAG	1 cut(s)	55
BfuAI	ACCTGC	1 cut(s)	695
BfuI	GTATCC	1 cut(s)	418
BisI	GCNGC	1 cut(s)	94
BlsI	GCNGC	1 cut(s)	95
Bme1390I	CCNGG	2 cut(s)	309, 321
BmeT110I	CYCGRG	3 cut(s)	487, 641, 980
BmgT120I	GGNCC	4 cut(s)	104, 282, 305, 483
BmiI	GGNNCC	2 cut(s)	294, 530
BmrFI	CCNGG	2 cut(s)	309, 321
BmsI	GCATC	1 cut(s)	991
BoxI	GACNNNNGTC	1 cut(s)	606
BpmI	CTGGAG	1 cut(s)	880
Bpu10I	CCTNAGC	1 cut(s)	573
BpuEI	CTTGAG	1 cut(s)	351
BpuMI	CCSGG	1 cut(s)	321
Bsa29I	ATCGAT	2 cut(s)	537, 768
BsaBI	GATNNNNATC	2 cut(s)	533, 849
BsaJI	CCNNGG	2 cut(s)	307, 486
BsaWI	WCCGGW	2 cut(s)	381, 610
Bsc4I	CCNNNNNNNGG	5 cut(s)	302, 319, 645, 883, 913
Bse1I	ACTGG	1 cut(s)	863
Bse21I	CCTNAGG	1 cut(s)	755
Bse3DI	GCAATG	2 cut(s)	43, 781
Bse8I	GATNNNNATC	2 cut(s)	533, 849
BseBI	CCWGG	1 cut(s)	309
BseCI	ATCGAT	2 cut(s)	537, 768
BseDI	CCNNGG	2 cut(s)	307, 486
BseGI	GGATG	1 cut(s)	654
BseJI	GATNNNNATC	2 cut(s)	533, 849
BseLI	CCNNNNNNNGG	5 cut(s)	302, 319, 645, 883, 913
BseMI	GCAATG	2 cut(s)	43, 781
BseNI	ACTGG	1 cut(s)	863
Bsh1236I	CGCG	1 cut(s)	958
Bsh1285I	CGRYCG	1 cut(s)	382
BshFI	GGCC	9 cut(s)	105, 284, 306, 312, 319, 364, 455, 485, 906
BshVI	ATCGAT	2 cut(s)	537, 768
BsiEI	CGRYCG	1 cut(s)	382
BsiHKCI	CYCGRG	3 cut(s)	487, 641, 980
BsiSI	CCGG	5 cut(s)	320, 382, 456, 611, 884
BslI	CCNNNNNNNGG	5 cut(s)	302, 319, 645, 883, 913
BsmAI	GTCTC	1 cut(s)	123
BsmI	GAATGC	1 cut(s)	144
BsnI	GGCC	9 cut(s)	105, 284, 306, 312, 319, 364, 455, 485, 906
BsoBI	CYCGRG	3 cut(s)	487, 641, 980
Bsp1407I	TGTACA	1 cut(s)	397
Bsp143I	GATC	5 cut(s)	439, 528, 616, 844, 850
BspACI	CCGC	2 cut(s)	93, 646
BspANI	GGCC	9 cut(s)	105, 284, 306, 312, 319, 364, 455, 485, 906
BspDI	ATCGAT	2 cut(s)	537, 768
BspFNI	CGCG	1 cut(s)	958
BspLI	GGNNCC	2 cut(s)	294, 530
BspMI	ACCTGC	1 cut(s)	695
BspPI	GGATC	4 cut(s)	447, 523, 536, 858
BspQI	GCTCTTC	1 cut(s)	216
BspTI	CTTAAG	1 cut(s)	55
BsrBI	CCGCTC	2 cut(s)	93, 646
BsrDI	GCAATG	2 cut(s)	43, 781
BsrGI	TGTACA	1 cut(s)	397
BsrI	ACTGG	1 cut(s)	863
BssECI	CCNNGG	2 cut(s)	307, 486
BssMI	GATC	5 cut(s)	439, 528, 616, 844, 850
Bst2UI	CCWGG	1 cut(s)	309
Bst6I	CTCTTC	3 cut(s)	30, 216, 248
BstAFI	CTTAAG	1 cut(s)	55
BstAUI	TGTACA	1 cut(s)	397
BstC8I	GCNNGC	3 cut(s)	52, 470, 934
BstDEI	CTNAG	2 cut(s)	573, 755
BstENI	CCTNNNNNAGG	1 cut(s)	911
BstF5I	GGATG	1 cut(s)	654
BstFNI	CGCG	1 cut(s)	958
BstHHI	GCGC	3 cut(s)	50, 638, 979
BstKTI	GATC	5 cut(s)	442, 531, 619, 847, 853
BstMAI	GTCTC	1 cut(s)	123
BstMBI	GATC	5 cut(s)	439, 528, 616, 844, 850
BstMCI	CGRYCG	1 cut(s)	382
BstMWI	GCNNNNNNNGC	2 cut(s)	45, 102
BstNI	CCWGG	1 cut(s)	309
BstPAI	GACNNNNGTC	1 cut(s)	606
BstSCI	CCNGG	2 cut(s)	307, 319
BstSFI	CTRYAG	1 cut(s)	589
BstUI	CGCG	1 cut(s)	958
BstX2I	RGATCY	2 cut(s)	528, 850
BstXI	CCANNNNNNTGG	1 cut(s)	315
BstYI	RGATCY	2 cut(s)	528, 850
Bsu15I	ATCGAT	2 cut(s)	537, 768
Bsu36I	CCTNAGG	1 cut(s)	755
BsuI	GTATCC	1 cut(s)	418
BsuRI	GGCC	9 cut(s)	105, 284, 306, 312, 319, 364, 455, 485, 906
BsuTUI	ATCGAT	2 cut(s)	537, 768
BtsCI	GGATG	1 cut(s)	654
BtsI	GCAGTG	1 cut(s)	340
BtsIMutI	CAGTG	1 cut(s)	340
BveI	ACCTGC	1 cut(s)	695
Cac8I	GCNNGC	3 cut(s)	52, 470, 934
CfoI	GCGC	3 cut(s)	50, 638, 979
Cfr13I	GGNCC	4 cut(s)	104, 282, 305, 483
ClaI	ATCGAT	2 cut(s)	537, 768
Csp6I	GTAC	2 cut(s)	398, 550
CviAII	CATG	3 cut(s)	389, 819, 942
CviQI	GTAC	2 cut(s)	398, 550
DdeI	CTNAG	2 cut(s)	573, 755
DpnI	GATC	5 cut(s)	441, 530, 618, 846, 852
DpnII	GATC	5 cut(s)	439, 528, 616, 844, 850
EaeI	YGGCCR	1 cut(s)	317
Eam1104I	CTCTTC	3 cut(s)	30, 216, 248
EarI	CTCTTC	3 cut(s)	30, 216, 248
Eco147I	AGGCCT	1 cut(s)	364
Eco57I	CTGAAG	1 cut(s)	470
Eco81I	CCTNAGG	1 cut(s)	755
Eco88I	CYCGRG	3 cut(s)	487, 641, 980
EcoNI	CCTNNNNNAGG	1 cut(s)	911
EcoRII	CCWGG	1 cut(s)	307
FaeI	CATG	3 cut(s)	392, 822, 945
FatI	CATG	3 cut(s)	388, 818, 941
FbaI	TGATCA	1 cut(s)	616
Fnu4HI	GCNGC	1 cut(s)	94
FokI	GGATG	1 cut(s)	661
Fsp4HI	GCNGC	1 cut(s)	94
FspI	TGCGCA	1 cut(s)	49
GlaI	GCGC	3 cut(s)	49, 637, 978
GluI	GCNGC	1 cut(s)	94
GsuI	CTGGAG	1 cut(s)	880
HaeIII	GGCC	9 cut(s)	105, 284, 306, 312, 319, 364, 455, 485, 906
HapII	CCGG	5 cut(s)	320, 382, 456, 611, 884
HhaI	GCGC	3 cut(s)	50, 638, 979
Hin1II	CATG	3 cut(s)	392, 822, 945
Hin6I	GCGC	3 cut(s)	48, 636, 977
HinP1I	GCGC	3 cut(s)	48, 636, 977
HindIII	AAGCTT	1 cut(s)	52
HinfI	GANTC	7 cut(s)	236, 414, 594, 607, 711, 765, 985
HpaII	CCGG	5 cut(s)	320, 382, 456, 611, 884
HphI	GGTGA	1 cut(s)	193
Hpy188I	TCNGA	4 cut(s)	167, 235, 379, 450
Hpy188III	TCNNGA	5 cut(s)	88, 418, 723, 848, 982
Hpy99I	CGWCG	2 cut(s)	424, 800
HpyAV	CCTTC	4 cut(s)	208, 401, 445, 841
HpyCH4V	TGCA	2 cut(s)	818, 1004
HpyF10VI	GCNNNNNNNGC	2 cut(s)	45, 102
HpyF3I	CTNAG	2 cut(s)	573, 755
Hsp92II	CATG	3 cut(s)	392, 822, 945
HspAI	GCGC	3 cut(s)	48, 636, 977
Ksp22I	TGATCA	1 cut(s)	616
Kzo9I	GATC	5 cut(s)	439, 528, 616, 844, 850
LguI	GCTCTTC	1 cut(s)	216
LmnI	GCTCC	1 cut(s)	897
LweI	GCATC	1 cut(s)	991
MaeIII	GTNAC	3 cut(s)	223, 237, 622
MalI	GATC	5 cut(s)	441, 530, 618, 846, 852
MbiI	CCGCTC	2 cut(s)	93, 646
MboI	GATC	5 cut(s)	439, 528, 616, 844, 850
MboII	GAAGA	5 cut(s)	17, 203, 235, 505, 690
MflI	RGATCY	2 cut(s)	528, 850
MluCI	AATT	4 cut(s)	98, 147, 631, 694
MlyI	GAGTC	3 cut(s)	245, 616, 720
MmeI	TCCRAC	2 cut(s)	190, 402
MseI	TTAA	2 cut(s)	56, 629
MslI	CAYNNNNRTG	1 cut(s)	393
MspCI	CTTAAG	1 cut(s)	55
MspI	CCGG	5 cut(s)	320, 382, 456, 611, 884
MspR9I	CCNGG	2 cut(s)	309, 321
Mva1269I	GAATGC	1 cut(s)	144
MvaI	CCWGG	1 cut(s)	309
MvnI	CGCG	1 cut(s)	958
MwoI	GCNNNNNNNGC	2 cut(s)	45, 102
NciI	CCSGG	1 cut(s)	321
NdeII	GATC	5 cut(s)	439, 528, 616, 844, 850
NlaIII	CATG	3 cut(s)	392, 822, 945
NlaIV	GGNNCC	2 cut(s)	294, 530
NmuCI	GTSAC	3 cut(s)	223, 237, 622
NsbI	TGCGCA	1 cut(s)	49
PaeR7I	CTCGAG	1 cut(s)	980
PaqCI	CACCTGC	1 cut(s)	695
PceI	AGGCCT	1 cut(s)	364
PciSI	GCTCTTC	1 cut(s)	216
PcsI	WCGNNNNNNNCGW	2 cut(s)	93, 795
PctI	GAATGC	1 cut(s)	144
PfeI	GAWTC	4 cut(s)	414, 594, 765, 985
PkrI	GCNGC	1 cut(s)	95
PleI	GAGTC	3 cut(s)	244, 615, 719
PpsI	GAGTC	3 cut(s)	244, 615, 719
PshAI	GACNNNNGTC	1 cut(s)	606
Psp6I	CCWGG	1 cut(s)	307
PspGI	CCWGG	1 cut(s)	307
PspN4I	GGNNCC	2 cut(s)	294, 530
PspPI	GGNCC	4 cut(s)	104, 282, 305, 483
PsuI	RGATCY	2 cut(s)	528, 850
RsaI	GTAC	2 cut(s)	399, 551
RsaNI	GTAC	2 cut(s)	398, 550
RseI	CAYNNNNRTG	1 cut(s)	393
SapI	GCTCTTC	1 cut(s)	216
SaqAI	TTAA	2 cut(s)	56, 629
SatI	GCNGC	1 cut(s)	94
Sau3AI	GATC	5 cut(s)	439, 528, 616, 844, 850
Sau96I	GGNCC	4 cut(s)	104, 282, 305, 483
SchI	GAGTC	3 cut(s)	245, 616, 720
ScrFI	CCNGG	2 cut(s)	309, 321
SfaNI	GCATC	1 cut(s)	991
SfcI	CTRYAG	1 cut(s)	589
Sfr274I	CTCGAG	1 cut(s)	980
SlaI	CTCGAG	1 cut(s)	980
SmiMI	CAYNNNNRTG	1 cut(s)	393
SmlI	CTYRAG	3 cut(s)	55, 366, 980
SmoI	CTYRAG	3 cut(s)	55, 366, 980
Sse9I	AATT	4 cut(s)	98, 147, 631, 694
SseBI	AGGCCT	1 cut(s)	364
SsiI	CCGC	2 cut(s)	93, 646
StuI	AGGCCT	1 cut(s)	364
StyD4I	CCNGG	2 cut(s)	307, 319
TaqI	TCGA	7 cut(s)	87, 136, 405, 537, 768, 843, 981
TasI	AATT	4 cut(s)	98, 147, 631, 694
TatI	WGTACW	2 cut(s)	397, 549
TauI	GCSGC	1 cut(s)	96
TfiI	GAWTC	4 cut(s)	414, 594, 765, 985
Tru1I	TTAA	2 cut(s)	56, 629
Tru9I	TTAA	2 cut(s)	56, 629
TscAI	CASTG	1 cut(s)	347
TseFI	GTSAC	3 cut(s)	223, 237, 622
Tsp45I	GTSAC	3 cut(s)	223, 237, 622
TspGWI	ACGGA	2 cut(s)	236, 437
TspRI	CASTG	1 cut(s)	347
Vha464I	CTTAAG	1 cut(s)	55
XagI	CCTNNNNNAGG	1 cut(s)	911
XapI	RAATTY	2 cut(s)	98, 147
XhoI	CTCGAG	1 cut(s)	980

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.