Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0001062

Physical Location & Seq

Genomic Coordinates Forward (+)

24783923 .. 24785998

Gene Structure 2076 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG238900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGGGGAAGAGCAGTATGTTTAATGCTGTCGACCCATACACGTTATACAGATCGGCATTAATCGGAACTTTGGATAATGTGACGTTGAACAGCGCCACTGATGATGGTTTTGTTTGGGACTTATCTTTATTGACCTCGGGTGGAAACAATCTCTATCTAGCTAGACCCAAATTCAATGGCACCTTGACATACCTCAGGCTCGGAATTGATGGAAACATCAAGCTTTACACTTACTACGGCCAGGTAGATTCATGGGAGCAGACCTTCACTCTTTTCGACAGGGACTCAAACTTTGAAACCGAGTGCCAGTTGCCGGAGCGATGCGGGAGCTTGGGCGTTTGCGAGGACAACCAGTGCGTTGCTTGCCCAACGTCTAACGGACTATCGGGTTGGAGCAAGACTTGTGCGCCGGAGAAGCTAACTTCATGCAAGGCAAACAGCTTTCGCTACTACAAGGTTGAAGGTGTAGATCATTTCTTGAGCAAGTATAATACAGGATCAGCTACAAAGGAGGTCGACTGTGGTAAGAAGTGTAGTTCCGACTGCAAGTGTCTGGGCTACTTTTACAACAGGGAAACGTCAAGGTGTTTGATAGCTTATGAGTTGAAGACCTTGACCAAAGTTGCAAATTCAACACATGTGGGTTTCATCAAGGCACCAAACCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005829 GO:0006810 GO:0006833 GO:0008150 GO:0009505 GO:0012505 GO:0016020 GO:0030312 GO:0031090 GO:0042044 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0051179 GO:0051234 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin PAN_2 S_locus_glycop

Protein Analysis

222

Amino Acids

24.68

Weight (kDa)

6.79

Isoelectric Point (pI)

22.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001062)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78850 AT1G78860
fragaria_vesca	FvH4_3g18371 FvH4_3g18380 FvH4_3g18383 FvH4_3g18410
malus_domestica	MD03G1242400.v1.1 MD11G1262100.v1.1 MD11G1262300.v1.1 MD11G1262400.v1.1 MD11G1262600.v1.1
prunus_persica	Prupe.4G165600_v2.0.a1 Prupe.4G166000_v2.0.a1 Prupe.4G166100_v2.0.a1 Prupe.4G166200_v2.0.a1
pyrus_communis	pycom11g23110 pycom11g23150
rosa_chinensis	RchiOBHm_Chr5g0031021 RchiOBHm_Chr5g0031031 RchiOBHm_Chr5g0031081 RchiOBHm_Chr5g0031091 RchiOBHm_Chr5g0031131 RchiOBHm_Chr5g0031141
rosa_laevigata	RLG00000033282 RLG00000033283 RLG00000033284 RLG00000033285
rosa_multiflora	Rmu_co8472871.1_g000001 Rmu_co8500049.1_g000001 Rmu_sc0001523.1_g000001 Rmu_sc0005489.1_g000008 Rmu_sc0020175.1_g000004 Rmu_sc0023422.1_g000001 Rmu_sc0023423.1_g000001
rosa_roxburghii	Rroxscaffold_1G00049150 Rroxscaffold_1G00049170 Rroxscaffold_1G00049190 Rroxscaffold_1G00049200 Rroxscaffold_1G00049210 Rroxscaffold_1G00049240
rosa_rugosa	Rorug05G0122300 Rorug05G0122400 Rorug05G0122500
rosa_samantha	Rh5AG215600 Rh5AG215700 Rh5AG216000 Rh5BG214800 Rh5BG214900 Rh5BG215000 Rh5BG215500 Rh5CG238900 Rh5DG219300 Rh5DG219400 Rh5DG219600 Rh5DG219900 Rh5DG220100
rosa_wichuraiana	Rw5G019730 Rw5G019740 Rw5G019750 Rw5G019760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	179, 655
AccI	GTMKAC	2 cut(s)	30, 516
AciI	CCGC	1 cut(s)	324
AclWI	GGATC	1 cut(s)	505
AcoI	YGGCCR	1 cut(s)	238
AcsI	RAATTY	2 cut(s)	170, 628
AfiI	CCNNNNNNNGG	1 cut(s)	313
AflIII	ACRYGT	2 cut(s)	39, 637
AgsI	TTSAA	6 cut(s)	88, 175, 296, 461, 607, 633
AjnI	CCWGG	1 cut(s)	240
AluBI	AGCT	7 cut(s)	161, 223, 330, 418, 441, 503, 596
AluI	AGCT	7 cut(s)	161, 223, 330, 418, 441, 503, 596
AlwI	GGATC	1 cut(s)	505
Ama87I	CYCGRG	1 cut(s)	136
AoxI	GGCC	1 cut(s)	238
ApoI	RAATTY	2 cut(s)	170, 628
ArsI	GACNNNNNNTTYG	2 cut(s)	275, 307
AseI	ATTAAT	1 cut(s)	59
AspLEI	GCGC	2 cut(s)	95, 409
AvaI	CYCGRG	1 cut(s)	136
AxyI	CCTNAGG	1 cut(s)	194
BanI	GGYRCC	2 cut(s)	179, 655
BbsI	GAAGAC	1 cut(s)	614
BccI	CCATC	2 cut(s)	98, 203
BceAI	ACGGC	1 cut(s)	253
BciT130I	CCWGG	1 cut(s)	242
BfaI	CTAG	3 cut(s)	158, 162, 667
BfoI	RGCGCY	1 cut(s)	96
Bme1390I	CCNGG	1 cut(s)	242
BmeT110I	CYCGRG	1 cut(s)	136
BmiI	GGNNCC	2 cut(s)	181, 657
BmrFI	CCNGG	1 cut(s)	242
BmsI	GCATC	1 cut(s)	311
BpiI	GAAGAC	1 cut(s)	614
BpuEI	CTTGAG	1 cut(s)	499
BsaJI	CCNNGG	1 cut(s)	135
Bsc4I	CCNNNNNNNGG	1 cut(s)	313
Bse1I	ACTGG	2 cut(s)	307, 352
Bse21I	CCTNAGG	1 cut(s)	194
BseBI	CCWGG	1 cut(s)	242
BseDI	CCNNGG	1 cut(s)	135
BseLI	CCNNNNNNNGG	1 cut(s)	313
BseMII	CTCAG	1 cut(s)	208
BseNI	ACTGG	2 cut(s)	307, 352
BshFI	GGCC	1 cut(s)	240
BshNI	GGYRCC	2 cut(s)	179, 655
BsiHKCI	CYCGRG	1 cut(s)	136
BsiSI	CCGG	2 cut(s)	314, 410
BslFI	GGGAC	2 cut(s)	131, 296
BslI	CCNNNNNNNGG	1 cut(s)	313
BsmFI	GGGAC	2 cut(s)	131, 296
BsnI	GGCC	1 cut(s)	240
BsoBI	CYCGRG	1 cut(s)	136
Bsp143I	GATC	3 cut(s)	50, 469, 497
BspACI	CCGC	1 cut(s)	324
BspANI	GGCC	1 cut(s)	240
BspCNI	CTCAG	1 cut(s)	207
BspLI	GGNNCC	2 cut(s)	181, 657
BspPI	GGATC	1 cut(s)	505
BspQI	GCTCTTC	1 cut(s)	2
BspT107I	GGYRCC	2 cut(s)	179, 655
BsrI	ACTGG	2 cut(s)	307, 352
BssECI	CCNNGG	1 cut(s)	135
BssMI	GATC	3 cut(s)	50, 469, 497
Bst2UI	CCWGG	1 cut(s)	242
Bst4CI	ACNGT	1 cut(s)	521
Bst6I	CTCTTC	1 cut(s)	2
BstC8I	GCNNGC	1 cut(s)	364
BstDEI	CTNAG	1 cut(s)	194
BstH2I	RGCGCY	1 cut(s)	96
BstHHI	GCGC	2 cut(s)	95, 409
BstKTI	GATC	3 cut(s)	53, 472, 500
BstMBI	GATC	3 cut(s)	50, 469, 497
BstMWI	GCNNNNNNNGC	2 cut(s)	363, 415
BstNI	CCWGG	1 cut(s)	242
BstNSI	RCATGY	1 cut(s)	641
BstSCI	CCNGG	1 cut(s)	240
BstV2I	GAAGAC	1 cut(s)	614
Bsu36I	CCTNAGG	1 cut(s)	194
BsuRI	GGCC	1 cut(s)	240
BtgZI	GCGATG	1 cut(s)	334
BtsIMutI	CAGTG	2 cut(s)	96, 359
Cac8I	GCNNGC	1 cut(s)	364
CfoI	GCGC	2 cut(s)	95, 409
CspCI	CAANNNNNGTGG	2 cut(s)	621, 656
CviAII	CATG	3 cut(s)	252, 426, 638
DdeI	CTNAG	1 cut(s)	194
DpnI	GATC	3 cut(s)	52, 471, 499
DpnII	GATC	3 cut(s)	50, 469, 497
EaeI	YGGCCR	1 cut(s)	238
Eam1104I	CTCTTC	1 cut(s)	2
EarI	CTCTTC	1 cut(s)	2
Eco81I	CCTNAGG	1 cut(s)	194
Eco88I	CYCGRG	1 cut(s)	136
EcoRII	CCWGG	1 cut(s)	240
FaeI	CATG	3 cut(s)	255, 429, 641
FaiI	YATR	9 cut(s)	17, 37, 46, 190, 253, 427, 489, 600, 639
FaqI	GGGAC	2 cut(s)	131, 296
FatI	CATG	3 cut(s)	251, 425, 637
FauI	CCCGC	1 cut(s)	317
FblI	GTMKAC	2 cut(s)	30, 516
FspBI	CTAG	3 cut(s)	158, 162, 667
GlaI	GCGC	2 cut(s)	94, 408
HaeII	RGCGCY	1 cut(s)	96
HaeIII	GGCC	1 cut(s)	240
HapII	CCGG	2 cut(s)	314, 410
HhaI	GCGC	2 cut(s)	95, 409
Hin1II	CATG	3 cut(s)	255, 429, 641
Hin6I	GCGC	2 cut(s)	93, 407
HinP1I	GCGC	2 cut(s)	93, 407
HincII	GTYRAC	2 cut(s)	31, 517
HindII	GTYRAC	2 cut(s)	31, 517
HindIII	AAGCTT	1 cut(s)	221
HinfI	GANTC	2 cut(s)	248, 284
HpaII	CCGG	2 cut(s)	314, 410
Hpy166II	GTNNAC	2 cut(s)	31, 517
Hpy188I	TCNGA	3 cut(s)	65, 203, 541
Hpy188III	TCNNGA	1 cut(s)	478
Hpy8I	GTNNAC	2 cut(s)	31, 517
HpyAV	CCTTC	2 cut(s)	274, 455
HpyCH4III	ACNGT	1 cut(s)	521
HpyCH4IV	ACGT	4 cut(s)	41, 83, 371, 578
HpyCH4V	TGCA	3 cut(s)	429, 546, 626
HpyF10VI	GCNNNNNNNGC	2 cut(s)	363, 415
HpyF3I	CTNAG	1 cut(s)	194
HpySE526I	ACGT	4 cut(s)	41, 83, 371, 578
Hsp92II	CATG	3 cut(s)	255, 429, 641
HspAI	GCGC	2 cut(s)	93, 407
Kzo9I	GATC	3 cut(s)	50, 469, 497
LguI	GCTCTTC	1 cut(s)	2
LmnI	GCTCC	4 cut(s)	256, 316, 327, 393
LweI	GCATC	1 cut(s)	311
MaeI	CTAG	3 cut(s)	158, 162, 667
MaeII	ACGT	4 cut(s)	41, 83, 371, 578
MaeIII	GTNAC	1 cut(s)	79
MalI	GATC	3 cut(s)	52, 471, 499
MboI	GATC	3 cut(s)	50, 469, 497
MboII	GAAGA	2 cut(s)	19, 619
MluCI	AATT	3 cut(s)	170, 204, 628
MlyI	GAGTC	1 cut(s)	278
MmeI	TCCRAC	2 cut(s)	371, 564
MnlI	CCTC	4 cut(s)	145, 203, 337, 505
MseI	TTAA	2 cut(s)	21, 59
MspI	CCGG	2 cut(s)	314, 410
MspR9I	CCNGG	1 cut(s)	242
MvaI	CCWGG	1 cut(s)	242
MwoI	GCNNNNNNNGC	2 cut(s)	363, 415
NdeII	GATC	3 cut(s)	50, 469, 497
NlaIII	CATG	3 cut(s)	255, 429, 641
NlaIV	GGNNCC	2 cut(s)	181, 657
NmuCI	GTSAC	1 cut(s)	79
NspI	RCATGY	1 cut(s)	641
PciI	ACATGT	1 cut(s)	637
PciSI	GCTCTTC	1 cut(s)	2
PfeI	GAWTC	1 cut(s)	248
PleI	GAGTC	1 cut(s)	278
PpsI	GAGTC	1 cut(s)	278
PscI	ACATGT	1 cut(s)	637
PshBI	ATTAAT	1 cut(s)	59
Psp6I	CCWGG	1 cut(s)	240
PspGI	CCWGG	1 cut(s)	240
PspN4I	GGNNCC	2 cut(s)	181, 657
SalI	GTCGAC	2 cut(s)	29, 515
SapI	GCTCTTC	1 cut(s)	2
SaqAI	TTAA	2 cut(s)	21, 59
Sau3AI	GATC	3 cut(s)	50, 469, 497
SchI	GAGTC	1 cut(s)	278
ScrFI	CCNGG	1 cut(s)	242
SfaNI	GCATC	1 cut(s)	311
SmlI	CTYRAG	1 cut(s)	478
SmoI	CTYRAG	1 cut(s)	478
Sse9I	AATT	3 cut(s)	170, 204, 628
SsiI	CCGC	1 cut(s)	324
SspMI	CTAG	3 cut(s)	158, 162, 667
StyD4I	CCNGG	1 cut(s)	240
TaaI	ACNGT	1 cut(s)	521
TaiI	ACGT	4 cut(s)	44, 86, 374, 581
TaqI	TCGA	3 cut(s)	30, 276, 516
TasI	AATT	3 cut(s)	170, 204, 628
TfiI	GAWTC	1 cut(s)	248
Tru1I	TTAA	2 cut(s)	21, 59
Tru9I	TTAA	2 cut(s)	21, 59
TscAI	CASTG	2 cut(s)	103, 359
TseFI	GTSAC	1 cut(s)	79
Tsp45I	GTSAC	1 cut(s)	79
TspDTI	ATGAA	3 cut(s)	240, 414, 637
TspGWI	ACGGA	1 cut(s)	393
TspRI	CASTG	2 cut(s)	103, 359
VspI	ATTAAT	1 cut(s)	59
XapI	RAATTY	2 cut(s)	170, 628
XceI	RCATGY	1 cut(s)	641
XmiI	GTMKAC	2 cut(s)	30, 516
XspI	CTAG	3 cut(s)	158, 162, 667

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.