Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0001062

Physical Location & Seq

Genomic Coordinates Forward (+)

11729079 .. 11730383

Gene Structure 1305 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g18371.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1305 bp

ATGTCATTGTTCTCCATATTCCTTTTTTCACTCTTTGCTTTCATTGCTCAAGCTCAAATTCCCGCGAATGAAACTTTCAAGTTTGTCAATTCTGGAGAATTTTGGCCTTACATCGTTGAATACGATGCCTCCTATCGTATGCTGGATCTCTTTGCCTCCCCCTTCCAGCTTGCTTTCTACAACACCACTCCCGACTCCTTCACTCTTGCTCTGCGCATGGGTTTGAAGAAATCTGAGTCATACTATCGTTGGGTTTGGGAGGCCAACCGGGGAAACCCAGTTGGCGAAAACGCTACCTTCTCTCTGGGAACCAATGGAAACATTGTCTTGGCAGATGGTGATGGTCGAGTGGCTTGGCAAAGCAACACTGCTAACAAAGGGGCGGTGCGCTTCAAGTTGCTTCGAAACGGAAACATGGTTCTTTACAACTCAAAGGGCAAGTCTGTCTGGCAAAGCTTCGACTCCCCTACAGACACTCTTGTAGCAAGTCAATCACTAGGTGCCGGAACAGTAAGCAAGCTCGTGAGTCGAGCATCGGAGACTGAAAACAAAGATGGACCTTATAGCTTGGTGGTGGAGCCTAAAGGATTGGCTATGTACTACAACAGCAAGAACTCTCCAAAGCCATTACTCTACTACAGATCCTCTAAATGGATTTCTGTTCCGAAGGGCTCATCACTACGCCACATAACATTGAACGCTGCCCCGGTAGAAGGGGGTCATGCTTATGACCTAACCTTGGAGTTTCTAGTCGGAAACTCTACCTCCGGCGGAAATCTCATTCTAGCTCGACCAAAATACAATAGCACATCGACATGCCTTAGGCTTGGAATTGATGGAAACCTCAACCTTTACACTTACTACGACAAGGCGCGTTATGGTGCATGGGAGACAACATTCACTCTCTTTGATAAAGAATCAGGAGTATCTGAAAATGGTTGCCAATTGCCGGAGCAATGTGGGAAGTTCGGCCTCTGTGAGAGTAACCAGTGTGTTGGTTGCCCATCGTCCAAGGGAGTTCTGGGTTGGAGTGAGAGCTGTGAGCCTGAGAAGCTTAGTTCTTGTGGGTCAAAGAGCTTCAGCTACTACAAAATTGAAGGGGTTGATCACTTCTTGAGCAAGTACACTAGTGGAGAGGCTTTGAAGGAGCCTGATTGTTCCAACAAGTGTGCTTTGGATTGCAAGTGTCTGGGTTTCTTTTACAACAGGGATGAATCAAGGTGTTGGATTGCTTATGAGTTGAAGACCTTGACCAAAGTTGACAAACCCAGTCATGTTGGTTACATCAAGGCACCTAATCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005829 GO:0006810 GO:0006833 GO:0008150 GO:0009505 GO:0012505 GO:0016020 GO:0030312 GO:0031090 GO:0042044 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0051179 GO:0051234 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin PAN_2 S_locus_glycop

Protein Analysis

435

Amino Acids

48.14

Weight (kDa)

8.28

Isoelectric Point (pI)

37.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B_lectin	PF01453	85 - 171	1.1e-17	D-mannose binding lectin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001062)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78850 AT1G78860
fragaria_vesca	FvH4_3g18371 FvH4_3g18380 FvH4_3g18383 FvH4_3g18410
malus_domestica	MD03G1242400.v1.1 MD11G1262100.v1.1 MD11G1262300.v1.1 MD11G1262400.v1.1 MD11G1262600.v1.1
prunus_persica	Prupe.4G165600_v2.0.a1 Prupe.4G166000_v2.0.a1 Prupe.4G166100_v2.0.a1 Prupe.4G166200_v2.0.a1
pyrus_communis	pycom11g23110 pycom11g23150
rosa_chinensis	RchiOBHm_Chr5g0031021 RchiOBHm_Chr5g0031031 RchiOBHm_Chr5g0031081 RchiOBHm_Chr5g0031091 RchiOBHm_Chr5g0031131 RchiOBHm_Chr5g0031141
rosa_laevigata	RLG00000033282 RLG00000033283 RLG00000033284 RLG00000033285
rosa_multiflora	Rmu_co8472871.1_g000001 Rmu_co8500049.1_g000001 Rmu_sc0001523.1_g000001 Rmu_sc0005489.1_g000008 Rmu_sc0020175.1_g000004 Rmu_sc0023422.1_g000001 Rmu_sc0023423.1_g000001
rosa_roxburghii	Rroxscaffold_1G00049150 Rroxscaffold_1G00049170 Rroxscaffold_1G00049190 Rroxscaffold_1G00049200 Rroxscaffold_1G00049210 Rroxscaffold_1G00049240
rosa_rugosa	Rorug05G0122300 Rorug05G0122400 Rorug05G0122500
rosa_samantha	Rh5AG215600 Rh5AG215700 Rh5AG216000 Rh5BG214800 Rh5BG214900 Rh5BG215000 Rh5BG215500 Rh5CG238900 Rh5DG219300 Rh5DG219400 Rh5DG219600 Rh5DG219900 Rh5DG220100
rosa_wichuraiana	Rw5G019730 Rw5G019740 Rw5G019750 Rw5G019760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	215
AccB1I	GGYRCC	2 cut(s)	500, 1291
AccII	CGCG	2 cut(s)	65, 874
AciI	CCGC	3 cut(s)	63, 383, 771
AclWI	GGATC	2 cut(s)	153, 636
AcsI	RAATTY	2 cut(s)	57, 98
AcuI	CTGAAG	1 cut(s)	1063
AdeI	CACNNNGTG	1 cut(s)	500
AfaI	GTAC	2 cut(s)	599, 1124
AfiI	CCNNNNNNNGG	4 cut(s)	651, 713, 739, 949
AgsI	TTSAA	8 cut(s)	79, 119, 226, 394, 697, 1097, 1144, 1243
AhlI	ACTAGT	1 cut(s)	1127
AloI	GAACNNNNNNTCC	2 cut(s)	402, 434
Alw26I	GTCTC	2 cut(s)	533, 884
AlwI	GGATC	2 cut(s)	153, 636
AoxI	GGCC	3 cut(s)	104, 261, 970
ApeKI	GCWGC	1 cut(s)	701
ApoI	RAATTY	2 cut(s)	57, 98
ArsI	GACNNNNNNTTYG	2 cut(s)	425, 457
AspLEI	GCGC	3 cut(s)	216, 390, 874
AspS9I	GGNCC	1 cut(s)	557
AsuC2I	CCSGG	2 cut(s)	269, 707
AsuHPI	GGTGA	1 cut(s)	350
AsuII	TTCGAA	1 cut(s)	403
AvaII	GGWCC	1 cut(s)	557
AxyI	CCTNAGG	1 cut(s)	821
BanI	GGYRCC	2 cut(s)	500, 1291
BanII	GRGCYC	1 cut(s)	674
BauI	CACGAG	1 cut(s)	521
BbsI	GAAGAC	1 cut(s)	1250
BbvI	GCAGC	1 cut(s)	688
BccI	CCATC	5 cut(s)	329, 335, 548, 830, 1012
BclI	TGATCA	1 cut(s)	1105
BcnI	CCSGG	2 cut(s)	269, 707
BcoDI	GTCTC	2 cut(s)	533, 884
BcuI	ACTAGT	1 cut(s)	1127
BfaI	CTAG	4 cut(s)	497, 749, 785, 1128
BfmI	CTRYAG	2 cut(s)	468, 637
BisI	GCNGC	1 cut(s)	702
BlsI	GCNGC	1 cut(s)	703
Bme1390I	CCNGG	2 cut(s)	269, 707
Bme18I	GGWCC	1 cut(s)	557
BmgT120I	GGNCC	1 cut(s)	557
BmiI	GGNNCC	5 cut(s)	310, 502, 579, 1149, 1293
BmrFI	CCNGG	2 cut(s)	269, 707
BmrI	ACTGGG	2 cut(s)	272, 1263
BmsI	GCATC	2 cut(s)	115, 542
BmuI	ACTGGG	2 cut(s)	272, 1263
BpiI	GAAGAC	1 cut(s)	1250
BpmI	CTGGAG	1 cut(s)	114
Bpu14I	TTCGAA	1 cut(s)	403
BpuEI	CTTGAG	2 cut(s)	33, 1135
BpuMI	CCSGG	2 cut(s)	269, 707
BsaJI	CCNNGG	4 cut(s)	268, 705, 738, 1011
BsaXI	ACNNNNNCTCC	4 cut(s)	113, 143, 749, 779
Bsc4I	CCNNNNNNNGG	4 cut(s)	651, 713, 739, 949
Bse1I	ACTGG	3 cut(s)	278, 988, 1269
Bse21I	CCTNAGG	1 cut(s)	821
Bse3DI	GCAATG	2 cut(s)	42, 962
BseDI	CCNNGG	4 cut(s)	268, 705, 738, 1011
BseGI	GGATG	1 cut(s)	1216
BseLI	CCNNNNNNNGG	4 cut(s)	651, 713, 739, 949
BseMI	GCAATG	2 cut(s)	42, 962
BseMII	CTCAG	2 cut(s)	225, 1038
BseNI	ACTGG	3 cut(s)	278, 988, 1269
BseXI	GCAGC	1 cut(s)	688
Bsh1236I	CGCG	2 cut(s)	65, 874
BshFI	GGCC	3 cut(s)	106, 263, 972
BshNI	GGYRCC	2 cut(s)	500, 1291
BsiSI	CCGG	5 cut(s)	268, 504, 707, 768, 950
BslI	CCNNNNNNNGG	4 cut(s)	651, 713, 739, 949
BsmAI	GTCTC	2 cut(s)	533, 884
BsnI	GGCC	3 cut(s)	106, 263, 972
Bsp119I	TTCGAA	1 cut(s)	403
Bsp1286I	GDGCHC	1 cut(s)	674
Bsp143I	GATC	3 cut(s)	145, 641, 1105
BspACI	CCGC	3 cut(s)	63, 383, 771
BspANI	GGCC	3 cut(s)	106, 263, 972
BspCNI	CTCAG	2 cut(s)	226, 1039
BspFNI	CGCG	2 cut(s)	65, 874
BspLI	GGNNCC	5 cut(s)	310, 502, 579, 1149, 1293
BspPI	GGATC	2 cut(s)	153, 636
BspT104I	TTCGAA	1 cut(s)	403
BspT107I	GGYRCC	2 cut(s)	500, 1291
BsrDI	GCAATG	2 cut(s)	42, 962
BsrI	ACTGG	3 cut(s)	278, 988, 1269
BssECI	CCNNGG	4 cut(s)	268, 705, 738, 1011
BssMI	GATC	3 cut(s)	145, 641, 1105
BssSI	CACGAG	1 cut(s)	521
BssT1I	CCWWGG	2 cut(s)	738, 1011
Bst2BI	CACGAG	1 cut(s)	521
Bst4CI	ACNGT	1 cut(s)	511
BstBI	TTCGAA	1 cut(s)	403
BstC8I	GCNNGC	2 cut(s)	171, 518
BstDEI	CTNAG	4 cut(s)	234, 821, 1047, 1055
BstF5I	GGATG	1 cut(s)	1216
BstFNI	CGCG	2 cut(s)	65, 874
BstHHI	GCGC	3 cut(s)	216, 390, 874
BstKTI	GATC	3 cut(s)	148, 644, 1108
BstMAI	GTCTC	2 cut(s)	533, 884
BstMBI	GATC	3 cut(s)	145, 641, 1105
BstMWI	GCNNNNNNNGC	2 cut(s)	44, 1051
BstNSI	RCATGY	1 cut(s)	819
BstSCI	CCNGG	2 cut(s)	267, 705
BstSFI	CTRYAG	2 cut(s)	468, 637
BstUI	CGCG	2 cut(s)	65, 874
BstV1I	GCAGC	1 cut(s)	688
BstV2I	GAAGAC	1 cut(s)	1250
BstX2I	RGATCY	2 cut(s)	145, 641
BstXI	CCANNNNNNTGG	1 cut(s)	995
BstYI	RGATCY	2 cut(s)	145, 641
Bsu36I	CCTNAGG	1 cut(s)	821
BsuRI	GGCC	3 cut(s)	106, 263, 972
BtsCI	GGATG	1 cut(s)	1216
BtsI	GCAGTG	1 cut(s)	366
BtsIMutI	CAGTG	2 cut(s)	366, 995
Cac8I	GCNNGC	2 cut(s)	171, 518
CfoI	GCGC	3 cut(s)	216, 390, 874
Cfr13I	GGNCC	1 cut(s)	557
Csp6I	GTAC	2 cut(s)	598, 1123
CviAII	CATG	6 cut(s)	217, 415, 722, 816, 885, 1274
CviQI	GTAC	2 cut(s)	598, 1123
DdeI	CTNAG	4 cut(s)	234, 821, 1047, 1055
DpnI	GATC	3 cut(s)	147, 643, 1107
DpnII	GATC	3 cut(s)	145, 641, 1105
DraIII	CACNNNGTG	1 cut(s)	500
EciI	GGCGGA	1 cut(s)	786
Eco130I	CCWWGG	2 cut(s)	738, 1011
Eco24I	GRGCYC	1 cut(s)	674
Eco47I	GGWCC	1 cut(s)	557
Eco57I	CTGAAG	1 cut(s)	1063
Eco81I	CCTNAGG	1 cut(s)	821
EcoT14I	CCWWGG	2 cut(s)	738, 1011
EcoT38I	GRGCYC	1 cut(s)	674
ErhI	CCWWGG	2 cut(s)	738, 1011
FaeI	CATG	6 cut(s)	220, 418, 725, 819, 888, 1277
FatI	CATG	6 cut(s)	216, 414, 721, 815, 884, 1273
FauI	CCCGC	1 cut(s)	70
FbaI	TGATCA	1 cut(s)	1105
Fnu4HI	GCNGC	1 cut(s)	702
FokI	GGATG	1 cut(s)	1223
FriOI	GRGCYC	1 cut(s)	674
Fsp4HI	GCNGC	1 cut(s)	702
FspBI	CTAG	4 cut(s)	497, 749, 785, 1128
FspI	TGCGCA	1 cut(s)	215
GlaI	GCGC	3 cut(s)	215, 389, 873
GluI	GCNGC	1 cut(s)	702
GsuI	CTGGAG	1 cut(s)	114
HaeIII	GGCC	3 cut(s)	106, 263, 972
HapII	CCGG	5 cut(s)	268, 504, 707, 768, 950
HhaI	GCGC	3 cut(s)	216, 390, 874
Hin1II	CATG	6 cut(s)	220, 418, 725, 819, 888, 1277
Hin6I	GCGC	3 cut(s)	214, 388, 872
HinP1I	GCGC	3 cut(s)	214, 388, 872
HincII	GTYRAC	1 cut(s)	1261
HindII	GTYRAC	1 cut(s)	1261
HindIII	AAGCTT	2 cut(s)	454, 1052
HinfI	GANTC	6 cut(s)	194, 236, 461, 526, 917, 1214
HpaII	CCGG	5 cut(s)	268, 504, 707, 768, 950
HphI	GGTGA	1 cut(s)	350
Hpy166II	GTNNAC	2 cut(s)	1125, 1261
Hpy188I	TCNGA	5 cut(s)	235, 538, 666, 755, 931
Hpy188III	TCNNGA	5 cut(s)	93, 191, 523, 921, 1114
Hpy8I	GTNNAC	2 cut(s)	1125, 1261
HpyAV	CCTTC	7 cut(s)	172, 208, 307, 661, 707, 1091, 1138
HpyCH4III	ACNGT	1 cut(s)	511
HpyCH4V	TGCA	2 cut(s)	884, 1182
HpyF10VI	GCNNNNNNNGC	2 cut(s)	44, 1051
HpyF3I	CTNAG	4 cut(s)	234, 821, 1047, 1055
Hsp92II	CATG	6 cut(s)	220, 418, 725, 819, 888, 1277
HspAI	GCGC	3 cut(s)	214, 388, 872
Ksp22I	TGATCA	1 cut(s)	1105
Kzo9I	GATC	3 cut(s)	145, 641, 1105
LmnI	GCTCC	3 cut(s)	577, 952, 1147
Lsp1109I	GCAGC	1 cut(s)	688
LweI	GCATC	2 cut(s)	115, 542
MaeI	CTAG	4 cut(s)	497, 749, 785, 1128
MaeIII	GTNAC	2 cut(s)	983, 1280
MalI	GATC	3 cut(s)	147, 643, 1107
MboI	GATC	3 cut(s)	145, 641, 1105
MboII	GAAGA	2 cut(s)	238, 1255
MfeI	CAATTG	1 cut(s)	944
MflI	RGATCY	2 cut(s)	145, 641
MhlI	GDGCHC	1 cut(s)	674
MluCI	AATT	6 cut(s)	57, 88, 98, 831, 944, 1092
MlyI	GAGTC	4 cut(s)	188, 245, 455, 535
MmeI	TCCRAC	4 cut(s)	733, 1007, 1185, 1205
MnlI	CCTC	8 cut(s)	139, 166, 253, 655, 775, 854, 983, 1129
MseI	TTAA	1 cut(s)	1303
MslI	CAYNNNNRTG	2 cut(s)	726, 814
MspI	CCGG	5 cut(s)	268, 504, 707, 768, 950
MspR9I	CCNGG	2 cut(s)	269, 707
MunI	CAATTG	1 cut(s)	944
MvnI	CGCG	2 cut(s)	65, 874
MwoI	GCNNNNNNNGC	2 cut(s)	44, 1051
NciI	CCSGG	2 cut(s)	269, 707
NdeII	GATC	3 cut(s)	145, 641, 1105
NlaIII	CATG	6 cut(s)	220, 418, 725, 819, 888, 1277
NlaIV	GGNNCC	5 cut(s)	310, 502, 579, 1149, 1293
NsbI	TGCGCA	1 cut(s)	215
NspI	RCATGY	1 cut(s)	819
NspV	TTCGAA	1 cut(s)	403
PcsI	WCGNNNNNNNCGW	1 cut(s)	120
PfeI	GAWTC	2 cut(s)	917, 1214
PkrI	GCNGC	1 cut(s)	703
PleI	GAGTC	4 cut(s)	188, 244, 455, 534
PpsI	GAGTC	4 cut(s)	188, 244, 455, 534
PspN4I	GGNNCC	5 cut(s)	310, 502, 579, 1149, 1293
PspPI	GGNCC	1 cut(s)	557
PsuI	RGATCY	2 cut(s)	145, 641
RsaI	GTAC	2 cut(s)	599, 1124
RsaNI	GTAC	2 cut(s)	598, 1123
RseI	CAYNNNNRTG	2 cut(s)	726, 814
SaqAI	TTAA	1 cut(s)	1303
SatI	GCNGC	1 cut(s)	702
Sau3AI	GATC	3 cut(s)	145, 641, 1105
Sau96I	GGNCC	1 cut(s)	557
SchI	GAGTC	4 cut(s)	188, 245, 455, 535
ScrFI	CCNGG	2 cut(s)	269, 707
SduI	GDGCHC	1 cut(s)	674
SfaNI	GCATC	2 cut(s)	115, 542
SfcI	CTRYAG	2 cut(s)	468, 637
SfuI	TTCGAA	1 cut(s)	403
SinI	GGWCC	1 cut(s)	557
SmiMI	CAYNNNNRTG	2 cut(s)	726, 814
SmlI	CTYRAG	2 cut(s)	48, 1114
SmoI	CTYRAG	2 cut(s)	48, 1114
SpeI	ACTAGT	1 cut(s)	1127
Sse9I	AATT	6 cut(s)	57, 88, 98, 831, 944, 1092
SsiI	CCGC	3 cut(s)	63, 383, 771
SspMI	CTAG	4 cut(s)	497, 749, 785, 1128
StyD4I	CCNGG	2 cut(s)	267, 705
StyI	CCWWGG	2 cut(s)	738, 1011
TaaI	ACNGT	1 cut(s)	511
TaqI	TCGA	6 cut(s)	346, 403, 459, 529, 790, 812
TasI	AATT	6 cut(s)	57, 88, 98, 831, 944, 1092
TatI	WGTACW	2 cut(s)	597, 1122
TfiI	GAWTC	2 cut(s)	917, 1214
Tru1I	TTAA	1 cut(s)	1303
Tru9I	TTAA	1 cut(s)	1303
TscAI	CASTG	2 cut(s)	373, 995
TseI	GCWGC	1 cut(s)	701
TspDTI	ATGAA	3 cut(s)	31, 84, 1227
TspGWI	ACGGA	1 cut(s)	423
TspRI	CASTG	2 cut(s)	373, 995
VpaK11BI	GGWCC	1 cut(s)	557
XapI	RAATTY	2 cut(s)	57, 98
XceI	RCATGY	1 cut(s)	819
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1018
XspI	CTAG	4 cut(s)	497, 749, 785, 1128

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.