Rorug05G0122400

Epidermis-specific secreted glycoprotein

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Forward (+)
10830999 .. 10838752
7754 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0122400.1

Sequence Viewer

Length: 4224 bp
ATGGAGTTTCTTTCAAAGCTTGCTGACTACACGATTGAACCTGTTGTACGTCTACTGGGACGCCAAGTGGGTTATGTAATTCACTGCAAAACCAACCTTCAAAATTTGCAAGCTAAAGTGGAAGAATTAAAAGCTGCCAGAGAGGCGATAGATAATGAGGTTGCTGAAGCTAAAACAAAAGGGAAAAAGATTCAACCTGATGTCCAGTTGTGGCTGACAACAGCGGGTAAGATCACTACAAAGACAGACGAATTTATCAAAGATGCAAGCCAGGTAAAGCTGAAATGTTTCCATGGATTTTGTCCTAATCTGACTACTCGTCATCAGCTTAGCAGGGAATCAACAAAACTGGTACAGGAGGTTGTTGAACAGTATGAAAAAAAAGGATTAATTTCCCAAGTTTCTTGCGGTATTCTCCGGAAAGAGGTATGGAGTGTACCTACCGGAGATTACCAGGCTCTTCAATCAAGGATATCAGTTGTGAAGGAAATCATGGATACACTGAAAGACTCTGATATTCAGAGGATGGGGGTGTGTGGAATTGGAGGAGTGGGTAAAACCACGTTGGTCAAAGAAGTTTACAAGCAAGCTTCAGAAGATAAACAGTTATTTGACAATGTGGTCATCATATTAGATGTGAAAAGTAATCCAGACCCGGAAGTAATTCAAAAGAAAATTGTTGAAAAGTTGGGCATGGAAATTTCTGTAAATGAAAAGGAAACTATTGATGGAAGAGCGAATCGTTTATGTGCCAGGATACAAGGCGAAAAGCTTCTTGTGATATTGGATGATGTTCAAGAAAAAATTGATTTGGAGATTGTGGGACTTCCCCGTTTGCCAACTTGTAAAATTTTGGTGACATGTAGAACTGCGGATGTTTTATCTTCTGATAAGATGTTTGCAGATAAAGTGTTTTCACTTGACCTTCTAGGTAAAGAAGAAACTTGGAATTTGTTTGTGAAGATGGCCGGTGACATTGTTAAACCCAATGGTCGAATACGAGATGCAGCAATCCAAGTAGCCGAAAAATGTGGAGGTCTGCCCTTATTAGTTGTCACAGTTGCAAGTGCTTTGAAAGGAAAAAAGAAATTAGGTGAATGGAAAGACGCCTTAAGACGACTTAAAGGGTTTGATAAAGAAGAATTGACGGAAAAGACATACCTGGCTTTGGAGTGGAGCTATAACAAATTAGATGATAAGGAGCTTAAACCGCTGTTCTTGCTATCCGGAATCATAGTGCAGCAGAACCATATTTATGTGCAAGACTTGTTGAAATATGGTGTGGGTTTAGGTTTGTTTACAAATGTGAATACATTGGAAGAAGCACGGAATGCATTGGATACACTGCTTGGAAAACTTAAAAATTCTTGCTTGTTGCTGGATAGTGATACTGAGGGAGTTGTCAGAATGCATGATCTTGTATGTCATGTTGCTAACCTGATTGCATACAGGGATCATCACATGTTATCAAGAGAATGTGGAGGTGAGTTTAAAGAATGGCCAAATAAGGATTCCTTAAAGAAGTGCACTAGGATCTCTCTCGTACACGAAAAGATTCCCACACTTCCCGAAATACCTATGGAATGCCCAGAACTAGAGCTGTTCTATTTGCATAACAGTGATAGCACTACATATGATGACTCGGTGCAATTCCAGTCCAACTTTTTTAGCGAGATGCAAAAACTCAGAGTGCTGAATTTAACCAACATGTGTATACCATCATTGCCTTTATCTCTTCAATACTTGAAGGAGCTTCAAACTTTGTGTTTGGTTGACTGCATGTTGGGAGATATAACTCTACTGGGGCAGCTAAGTAGCTTGGAAGTTCTTAGCTTTTCACAATCCAATGTTAGAGAATTGCCTAAAGAAATAGGGCAATTGACTCTTCTTCGGTTGTTGGATTTATCTGATTGCGTTGGTCTTAAAGTGATTTCACCTACTGTTATATCCAGCTTGGTGAAACTGGAGGATTTGAATATGAGAAACAGCTTTCAGAAATGGGAAGTTGAAGGTGAAGGGAGTAATGCAAGCCTTTCAGAGCTGCAACATTTGTCTCAGCTATCCTCATTAGAAATACATATTCCGAATGTTGACGCTCTTCCAGCAAACTTGTTCTCCGACAAGTTAGAAAGATTCAAGATTTATATTGGGGATGCATGGGATGTCAGATCTCCATGGAAGAAATTTAGGAATACGATGACCCTCAACACATTAAAACTCAAGCTCACTAAAGAATTAGATGAAAGCCTAAAATGGCTGCTAAAGAATTCTGAAGACTTGTCCTTGGATGAGACGAATGTTGTTATTGTCCATGATTTGAATGTCGAAGATTTTGAAAATAAGATACATCTCCAACTCCAAAACAATGTTGATTTTATGGCTATGGTTAACAAGAAGGTTGTGTTCCCAAAGTTAGCAACCTTGTCAGTGCATGGATGTGATAGTTTAAAAATTTTGTTCTCATCTTCCATGGCTAGAAGTCTTGTACAACTCACACATCTAAAAATATCTGCCTGTAAACTCCTGAAAGAGATTGTATCATCAACAAGAGAAGGCGGTGAAGACAATATGGATGACATGTTTTATAAACTTAAAGTTTTGAAGCTTGAAGAACTTCCAAAACTCGCTAGATTCAGCACAGGAAATTATATTGAGTTTCCGTCATTGGAAGAGCTGGAGGTAAAGGGTTGTGATAATCTGGGGGTAATCATTGGTGATAAAGTTTCTATGAGTAGTAAAGACACTAGAAGCTGCAAAGAAATTGAACAAAGGGTCTTGGAAGAGGAAGAGAACCTTGAAGTCAAGAGTGAGACCGTTGTGAAATACTCCCTCTTTAACGAAAAGGTAGGATTTCCTATCTTGAAGACATTGTGCATCAGAGGGATAAGGGAGTTGAAGGCGATATGGCACGTCCAACTATCTCAAAACTCTTTTCGGAGACTCAAGCAAGTTAAGGTTCGGGAATGTGACAATCTTATAAGTTTGTTTCCGCCTAGTGTCATGAGAAGATTGAATACGCTGGAAACCTTGAACATATGGAATTGCAAATCACTAGAAGTGGTATGTGAGGAAATTGTTGTTGCAGAAGAGGAACAAGAAGTTGTAGAAACAACACCTCCTCCATTTGTATTTCCAAAAGTAACATTGGCGGAGTTGGGGAATCTACCTCAACTTACGGGCATAAATGCTTCACAATGGCCATCACTCAAACGATTGGAGGTGAAGGGATGTGATAAAGTGGGAATTTTTGCCACAGAATTTTCTCACTTTGGAAAGAAATATGAGATGGAACCTCTAATGACGTCTCAAAAGCCTTTATTTCTAACCGACAAGGATTCATTCCTCAACTTGGAAGACTTAGAATTGAAGGACATGGAAATTTGGAATGGGCCACCCCCAGCGGATCAGTTGGTGTTTGGCAAATTAAAATCAATCAGCTTTTATGGGAATTGTGCACCTTTCTCCAAGCAAGCTTCGGTCCTTTTTCTCCAGAGATTACAAAATCTTGAAAGAATTTATGTGGGGGACAATTCTTGCAAAAGAATTAATGGTAGCACTACTGGGGAAGAAATACATGATAATGCAGTTGGGAGTGGGACCCTCCCTCATGTAAGGAGTTTGACGCTGGACATGGACCAATTGATGGATCTAGAGAACGACAACTCTCAATCACTACTTTTTCCAAATTTGGAAACCCTTGCGCTGGCGTTTTGTTCCAGATTAAAAAGTATAGAGTCATCCGCAATATCCTTCCGGAATCTTACAACTTTGAGTGTATACGAGTGTGATGGATTTGAATATATAACAAGTTATTCAGTGGCTAAAAGCTTAGTGCAACTCAAAACATTGACGGTGGACTCCTGTCGAAGTGTTGTAGTGATAGTGGCAAGCAATGTGGGAGACGATGATGCTGATGATGCCCCTGAAAATGAGATTGTTTTCAGCCACTTGCAACATTTGACTCTATTTAATCTACCAAGGCTACAAGGCTTTTCCTCCGAAAATTGCAGAGTCAAATTCCCATCCTCTGTGACCTTAAAAGTACGTATATGCCCGATCAAGTTGAAGATTTCCCCTGATGGGGTCCTCCTAACAGTAATAGAGGATCAATGTGAGCAAAAAGGAGATGATGACATTGACAATGATGATGATGATCAACAGAAAAATGATGTTGAATCAGCTGGGAGAACTCCTAAAATATCATCAGAAGAGCCTGCTCTCTAG

Protein Analysis

1407

Amino Acids

158.55

Weight (kDa)

5.37

Isoelectric Point (pI)

38.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NB-ARC PF00931 161 - 324 1.7e-26 NB-ARC domain
AAA_22 PF13401 178 - 269 7.2e-06 AAA domain
LRR_14 PF23598 553 - 832 6.7e-10 Leucine-rich repeat region
LRR_RPS2 PF23247 796 - 903 2.7e-16 Plant disease resistance protein RPS2-like, leucine-rich repeats
LRR_RPS2 PF23247 945 - 1016 7.8e-15 Plant disease resistance protein RPS2-like, leucine-rich repeats
LRR_RPS2 PF23247 963 - 1079 1.5e-16 Plant disease resistance protein RPS2-like, leucine-rich repeats
LRR_RPS2 PF23247 1118 - 1244 1.9e-07 Plant disease resistance protein RPS2-like, leucine-rich repeats
LRR_RPS2 PF23247 1248 - 1330 1.7e-10 Plant disease resistance protein RPS2-like, leucine-rich repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 2586, 2978
AasI GACNNNNNNGTC 1 cut(s) 620
AatII GACGTC 1 cut(s) 3305
AccB7I CCANNNNNTGG 1 cut(s) 3643
AccI GTMKAC 3 cut(s) 52, 1714, 3777
AccIII TCCGGA 3 cut(s) 417, 1226, 3753
AciI CCGC 9 cut(s) 224, 408, 872, 1211, 2556, 2990, 3149, 3401, 3741
AclWI GGATC 5 cut(s) 1461, 1541, 3411, 3654, 4113
AcoI YGGCCR 3 cut(s) 966, 1499, 3197
AcuI CTGAAG 3 cut(s) 186, 576, 2292
AcyI GRCGYC 3 cut(s) 61, 1107, 3302
AfaI GTAC 6 cut(s) 48, 354, 438, 1545, 2487, 4044
AfiI CCNNNNNNNGG 7 cut(s) 424, 1168, 3349, 3643, 3703, 4080, 4081
AflII CTTAAG 1 cut(s) 1111
AflIII ACRYGT 4 cut(s) 860, 1461, 1707, 2577
AhdI GACNNNNNGTC 1 cut(s) 318
AjiI CACGTC 1 cut(s) 2911
AjnI CCWGG 4 cut(s) 270, 453, 752, 1161
AjuI GAANNNNNNNTTGG 2 cut(s) 1495, 1527
Alw21I GWGCWC 2 cut(s) 1529, 3457
Alw26I GTCTC 6 cut(s) 2058, 2285, 2804, 2932, 3309, 3894
Alw44I GTGCAC 2 cut(s) 1525, 3453
AlwI GGATC 5 cut(s) 1461, 1541, 3411, 3654, 4113
Aor13HI TCCGGA 3 cut(s) 417, 1226, 3753
AoxI GGCC 4 cut(s) 966, 1499, 3197, 3389
ApaLI GTGCAC 2 cut(s) 1525, 3453
ApeKI GCWGC 7 cut(s) 134, 1007, 1240, 1807, 2041, 2257, 2751
AseI ATTAAT 2 cut(s) 389, 3546
Asp700I GAANNNNTTC 5 cut(s) 287, 663, 771, 1554, 2613
AspLEI GCGC 1 cut(s) 3703
AspS9I GGNCC 5 cut(s) 3389, 3478, 3597, 3634, 4084
AsuC2I CCSGG 1 cut(s) 656
AvaII GGWCC 4 cut(s) 3478, 3597, 3634, 4084
BaeGI GKGCMC 2 cut(s) 1529, 3457
BalI TGGCCA 2 cut(s) 1501, 3199
BarI GAAGNNNNNNTAC 2 cut(s) 2998, 3030
BbsI GAAGAC 4 cut(s) 2280, 2568, 2870, 3360
Bbv12I GWGCWC 2 cut(s) 1529, 3457
BbvI GCAGC 7 cut(s) 121, 1019, 1252, 1819, 2028, 2244, 2738
BciT130I CCWGG 4 cut(s) 272, 455, 754, 1163
BciVI GTATCC 3 cut(s) 490, 750, 1333
BclI TGATCA 1 cut(s) 4153
BcnI CCSGG 1 cut(s) 656
BcoDI GTCTC 6 cut(s) 2058, 2285, 2804, 2932, 3309, 3894
BfrI CTTAAG 1 cut(s) 1111
BfuI GTATCC 3 cut(s) 490, 750, 1333
BglI GCCNNNNNGGC 1 cut(s) 143
BglII AGATCT 1 cut(s) 2168
BisI GCNGC 7 cut(s) 135, 1008, 1241, 1808, 2042, 2258, 2752
BlpI GCTNAGC 1 cut(s) 329
BlsI GCNGC 7 cut(s) 136, 1009, 1242, 1809, 2043, 2259, 2753
Bme1390I CCNGG 5 cut(s) 272, 455, 656, 754, 1163
Bme18I GGWCC 4 cut(s) 3478, 3597, 3634, 4084
BmeRI GACNNNNNGTC 1 cut(s) 318
BmgBI CACGTC 1 cut(s) 2911
BmgT120I GGNCC 5 cut(s) 3389, 3478, 3597, 3634, 4084
BmiI GGNNCC 4 cut(s) 3291, 3598, 3599, 4085
BmrFI CCNGG 5 cut(s) 272, 455, 656, 754, 1163
BmrI ACTGGG 3 cut(s) 65, 1811, 3570
BmsI GCATC 7 cut(s) 253, 994, 1665, 2143, 2883, 3898, 3907
BmuI ACTGGG 3 cut(s) 65, 1811, 3570
BoxI GACNNNNGTC 1 cut(s) 3861
BpiI GAAGAC 4 cut(s) 2280, 2568, 2870, 3360
BpmI CTGGAG 3 cut(s) 1985, 2696, 3473
Bpu1102I GCTNAGC 1 cut(s) 329
BpuEI CTTGAG 2 cut(s) 2204, 2927
BpuMI CCSGG 1 cut(s) 656
BsaAI YACGTR 1 cut(s) 4046
BsaBI GATNNNNATC 1 cut(s) 4152
BsaHI GRCGYC 3 cut(s) 61, 1107, 3302
BsaI GGTCTC 1 cut(s) 2804
BsaJI CCNNGG 5 cut(s) 292, 2174, 2283, 2469, 3977
BsaWI WCCGGW 4 cut(s) 417, 443, 1226, 3753
BsaXI ACNNNNNCTCC 6 cut(s) 2099, 2129, 3100, 3103, 3130, 3133
Bsc4I CCNNNNNNNGG 7 cut(s) 424, 1168, 3349, 3643, 3703, 4080, 4081
Bse118I RCCGGY 1 cut(s) 968
Bse1I ACTGG 7 cut(s) 60, 205, 354, 1654, 1806, 1968, 3565
Bse3DI GCAATG 2 cut(s) 1721, 3898
Bse8I GATNNNNATC 1 cut(s) 4152
BseAI TCCGGA 3 cut(s) 417, 1226, 3753
BseBI CCWGG 4 cut(s) 272, 455, 754, 1163
BseDI CCNNGG 5 cut(s) 292, 2174, 2283, 2469, 3977
BseJI GATNNNNATC 1 cut(s) 4152
BseLI CCNNNNNNNGG 7 cut(s) 424, 1168, 3349, 3643, 3703, 4080, 4081
BseMI GCAATG 2 cut(s) 1721, 3898
BseMII CTCAG 3 cut(s) 1383, 1699, 2069
BseNI ACTGG 7 cut(s) 60, 205, 354, 1654, 1806, 1968, 3565
BseRI GAGGAG 2 cut(s) 561, 3108
BseSI GKGCMC 2 cut(s) 1529, 3457
BseXI GCAGC 7 cut(s) 121, 1019, 1252, 1819, 2028, 2244, 2738
BseYI CCCAGC 2 cut(s) 3397, 4181
BsgI GTGCAG 1 cut(s) 1259
BshFI GGCC 4 cut(s) 968, 1501, 3199, 3391
BsiHKAI GWGCWC 2 cut(s) 1529, 3457
BsiSI CCGG 6 cut(s) 418, 444, 656, 969, 1227, 3754
BslFI GGGAC 4 cut(s) 72, 837, 3539, 3610
BslI CCNNNNNNNGG 7 cut(s) 424, 1168, 3349, 3643, 3703, 4080, 4081
BsmAI GTCTC 6 cut(s) 2058, 2285, 2804, 2932, 3309, 3894
BsmBI CGTCTC 3 cut(s) 2285, 3309, 3894
BsmFI GGGAC 4 cut(s) 72, 837, 3539, 3610
BsmI GAATGC 3 cut(s) 1336, 1413, 1589
BsnI GGCC 4 cut(s) 968, 1501, 3199, 3391
Bso31I GGTCTC 1 cut(s) 2804
Bsp1286I GDGCHC 2 cut(s) 1529, 3457
Bsp13I TCCGGA 3 cut(s) 417, 1226, 3753
Bsp1407I TGTACA 1 cut(s) 2485
Bsp1720I GCTNAGC 1 cut(s) 329
Bsp19I CCATGG 3 cut(s) 292, 2174, 2469
BspACI CCGC 9 cut(s) 224, 408, 872, 1211, 2556, 2990, 3149, 3401, 3741
BspANI GGCC 4 cut(s) 968, 1501, 3199, 3391
BspCNI CTCAG 3 cut(s) 1384, 1698, 2068
BspEI TCCGGA 3 cut(s) 417, 1226, 3753
BspHI TCATGA 1 cut(s) 3000
BspLI GGNNCC 4 cut(s) 3291, 3598, 3599, 4085
BspPI GGATC 5 cut(s) 1461, 1541, 3411, 3654, 4113
BspQI GCTCTTC 5 cut(s) 465, 727, 2103, 2664, 4203
BspTI CTTAAG 1 cut(s) 1111
BspTNI GGTCTC 1 cut(s) 2804
BsrDI GCAATG 2 cut(s) 1721, 3898
BsrFI RCCGGY 1 cut(s) 968
BsrGI TGTACA 1 cut(s) 2485
BsrI ACTGG 7 cut(s) 60, 205, 354, 1654, 1806, 1968, 3565
BssAI RCCGGY 1 cut(s) 968
BssECI CCNNGG 5 cut(s) 292, 2174, 2283, 2469, 3977
BssNAI GTATAC 2 cut(s) 1715, 3778
BssNI GRCGYC 3 cut(s) 61, 1107, 3302
BssT1I CCWWGG 5 cut(s) 292, 2174, 2283, 2469, 3977
Bst1107I GTATAC 2 cut(s) 1715, 3778
Bst2UI CCWGG 4 cut(s) 272, 455, 754, 1163
Bst4CI ACNGT 8 cut(s) 372, 606, 1060, 1619, 1942, 2815, 3853, 4096
BstACI GRCGYC 3 cut(s) 61, 1107, 3302
BstAFI CTTAAG 1 cut(s) 1111
BstAPI GCANNNNNTGC 1 cut(s) 1331
BstAUI TGTACA 1 cut(s) 2485
BstBAI YACGTR 1 cut(s) 4046
BstC8I GCNNGC 9 cut(s) 21, 111, 268, 588, 2029, 3471, 3705, 3889, 4215
BstDEI CTNAG 8 cut(s) 329, 1392, 1685, 1811, 1829, 2055, 3358, 3829
BstDSI CCRYGG 3 cut(s) 292, 2174, 2469
BstHHI GCGC 1 cut(s) 3703
BstMAI GTCTC 6 cut(s) 2058, 2285, 2804, 2932, 3309, 3894
BstMWI GCNNNNNNNGC 6 cut(s) 143, 1210, 1219, 1331, 2102, 3917
BstNI CCWGG 4 cut(s) 272, 455, 754, 1163
BstNSI RCATGY 5 cut(s) 864, 1465, 1711, 1783, 2581
BstPAI GACNNNNGTC 1 cut(s) 3861
BstSCI CCNGG 5 cut(s) 270, 453, 654, 752, 1161
BstSLI GKGCMC 2 cut(s) 1529, 3457
BstSNI TACGTA 1 cut(s) 4046
BstV1I GCAGC 7 cut(s) 121, 1019, 1252, 1819, 2028, 2244, 2738
BstV2I GAAGAC 4 cut(s) 2280, 2568, 2870, 3360
BstX2I RGATCY 3 cut(s) 1533, 2168, 3646
BstYI RGATCY 3 cut(s) 1533, 2168, 3646
BstZ17I GTATAC 2 cut(s) 1715, 3778
BsuI GTATCC 3 cut(s) 490, 750, 1333
BsuRI GGCC 4 cut(s) 968, 1501, 3199, 3391
BtgI CCRYGG 3 cut(s) 292, 2174, 2469
BtrI CACGTC 1 cut(s) 2911
BtsI GCAGTG 2 cut(s) 82, 1343
BtsIMutI CAGTG 6 cut(s) 82, 500, 1343, 1624, 2433, 3822
Cac8I GCNNGC 9 cut(s) 21, 111, 268, 588, 2029, 3471, 3705, 3889, 4215
CciI TCATGA 1 cut(s) 3000
CfoI GCGC 1 cut(s) 3703
Cfr10I RCCGGY 1 cut(s) 968
Cfr13I GGNCC 5 cut(s) 3389, 3478, 3597, 3634, 4084
CseI GACGC 4 cut(s) 69, 1115, 2102, 3631
Csp6I GTAC 6 cut(s) 47, 353, 437, 1544, 2486, 4043
CspCI CAANNNNNGTGG 2 cut(s) 3876, 3911
CviQI GTAC 6 cut(s) 47, 353, 437, 1544, 2486, 4043
DdeI CTNAG 8 cut(s) 329, 1392, 1685, 1811, 1829, 2055, 3358, 3829
DraI TTTAAA 2 cut(s) 1492, 2448
DrdI GACNNNNNNGTC 1 cut(s) 620
DriI GACNNNNNGTC 1 cut(s) 318
DseDI GACNNNNNNGTC 1 cut(s) 620
EaeI YGGCCR 3 cut(s) 966, 1499, 3197
Eam1105I GACNNNNNGTC 1 cut(s) 318
EciI GGCGGA 2 cut(s) 2979, 3164
Eco105I TACGTA 1 cut(s) 4046
Eco130I CCWWGG 5 cut(s) 292, 2174, 2283, 2469, 3977
Eco31I GGTCTC 1 cut(s) 2804
Eco32I GATATC 1 cut(s) 474
Eco47I GGWCC 4 cut(s) 3478, 3597, 3634, 4084
Eco57I CTGAAG 3 cut(s) 186, 576, 2292
EcoO109I RGGNCCY 2 cut(s) 3597, 4084
EcoRI GAATTC 1 cut(s) 2266
EcoRII CCWGG 4 cut(s) 270, 453, 752, 1161
EcoRV GATATC 1 cut(s) 474
EcoT14I CCWWGG 5 cut(s) 292, 2174, 2283, 2469, 3977
EcoT22I ATGCAT 3 cut(s) 1336, 1413, 2158
ErhI CCWWGG 5 cut(s) 292, 2174, 2283, 2469, 3977
Esp3I CGTCTC 3 cut(s) 2285, 3309, 3894
FalI AAGNNNNNCTT 4 cut(s) 1499, 1531, 2778, 2810
FaqI GGGAC 4 cut(s) 72, 837, 3539, 3610
FauI CCCGC 1 cut(s) 217
FauNDI CATATG 2 cut(s) 1633, 3035
FbaI TGATCA 1 cut(s) 4153
FblI GTMKAC 3 cut(s) 52, 1714, 3777
Fnu4HI GCNGC 7 cut(s) 135, 1008, 1241, 1808, 2042, 2258, 2752
Fsp4HI GCNGC 7 cut(s) 135, 1008, 1241, 1808, 2042, 2258, 2752
GlaI GCGC 1 cut(s) 3702
GluI GCNGC 7 cut(s) 135, 1008, 1241, 1808, 2042, 2258, 2752
GsaI CCCAGC 2 cut(s) 3401, 4185
GsuI CTGGAG 3 cut(s) 1985, 2696, 3473
HaeIII GGCC 4 cut(s) 968, 1501, 3199, 3391
HapII CCGG 6 cut(s) 418, 444, 656, 969, 1227, 3754
HgaI GACGC 4 cut(s) 69, 1115, 2102, 3631
HhaI GCGC 1 cut(s) 3703
Hin1I GRCGYC 3 cut(s) 61, 1107, 3302
Hin6I GCGC 1 cut(s) 3701
HinP1I GCGC 1 cut(s) 3701
HincII GTYRAC 3 cut(s) 1774, 2092, 2389
HindII GTYRAC 3 cut(s) 1774, 2092, 2389
HindIII AAGCTT 6 cut(s) 17, 588, 770, 2603, 3471, 3826
HpaI GTTAAC 1 cut(s) 2389
HpaII CCGG 6 cut(s) 418, 444, 656, 969, 1227, 3754
HpyCH4III ACNGT 8 cut(s) 372, 606, 1060, 1619, 1942, 2815, 3853, 4096
HpyCH4IV ACGT 5 cut(s) 49, 563, 2910, 3302, 4045
HpyF10VI GCNNNNNNNGC 6 cut(s) 143, 1210, 1219, 1331, 2102, 3917
HpyF3I CTNAG 8 cut(s) 329, 1392, 1685, 1811, 1829, 2055, 3358, 3829
HpySE526I ACGT 5 cut(s) 49, 563, 2910, 3302, 4045
Hsp92I GRCGYC 3 cut(s) 61, 1107, 3302
HspAI GCGC 1 cut(s) 3701
KflI GGGWCCC 1 cut(s) 3597
Kpn2I TCCGGA 3 cut(s) 417, 1226, 3753
Ksp22I TGATCA 1 cut(s) 4153
KspAI GTTAAC 1 cut(s) 2389
LguI GCTCTTC 5 cut(s) 465, 727, 2103, 2664, 4203
LmnI GCTCC 3 cut(s) 1176, 1201, 1750
Lsp1109I GCAGC 7 cut(s) 121, 1019, 1252, 1819, 2028, 2244, 2738
LweI GCATC 7 cut(s) 253, 994, 1665, 2143, 2883, 3898, 3907
MaeII ACGT 5 cut(s) 49, 563, 2910, 3302, 4045
MaeIII GTNAC 6 cut(s) 856, 971, 1054, 2966, 3139, 4030
MfeI CAATTG 2 cut(s) 1877, 3638
MflI RGATCY 3 cut(s) 1533, 2168, 3646
MhlI GDGCHC 2 cut(s) 1529, 3457
MlsI TGGCCA 2 cut(s) 1501, 3199
MluNI TGGCCA 2 cut(s) 1501, 3199
MlyI GAGTC 8 cut(s) 503, 1634, 1876, 2934, 3743, 3851, 3955, 4020
MmeI TCCRAC 5 cut(s) 1683, 1878, 2142, 2377, 2938
Mox20I TGGCCA 2 cut(s) 1501, 3199
Mph1103I ATGCAT 3 cut(s) 1336, 1413, 2158
MroI TCCGGA 3 cut(s) 417, 1226, 3753
MroXI GAANNNNTTC 5 cut(s) 287, 663, 771, 1554, 2613
MscI TGGCCA 2 cut(s) 1501, 3199
MslI CAYNNNNRTG 4 cut(s) 1254, 1617, 2436, 3579
Msp20I TGGCCA 2 cut(s) 1501, 3199
MspA1I CMGCKG 4 cut(s) 224, 1213, 3401, 4181
MspCI CTTAAG 1 cut(s) 1111
MspI CCGG 6 cut(s) 418, 444, 656, 969, 1227, 3754
MspR9I CCNGG 5 cut(s) 272, 455, 656, 754, 1163
MunI CAATTG 2 cut(s) 1877, 3638
Mva1269I GAATGC 3 cut(s) 1336, 1413, 1589
MvaI CCWGG 4 cut(s) 272, 455, 754, 1163
MwoI GCNNNNNNNGC 6 cut(s) 143, 1210, 1219, 1331, 2102, 3917
NciI CCSGG 1 cut(s) 656
NcoI CCATGG 3 cut(s) 292, 2174, 2469
NdeI CATATG 2 cut(s) 1633, 3035
NlaIV GGNNCC 4 cut(s) 3291, 3598, 3599, 4085
NmuCI GTSAC 5 cut(s) 856, 971, 1054, 2966, 4030
NsiI ATGCAT 3 cut(s) 1336, 1413, 2158
NspI RCATGY 5 cut(s) 864, 1465, 1711, 1783, 2581
PagI TCATGA 1 cut(s) 3000
PciI ACATGT 4 cut(s) 860, 1461, 1707, 2577
PciSI GCTCTTC 5 cut(s) 465, 727, 2103, 2664, 4203
PctI GAATGC 3 cut(s) 1336, 1413, 1589
PdmI GAANNNNTTC 5 cut(s) 287, 663, 771, 1554, 2613
PflMI CCANNNNNTGG 1 cut(s) 3643
PkrI GCNGC 7 cut(s) 136, 1009, 1242, 1809, 2043, 2259, 2753
PleI GAGTC 8 cut(s) 503, 1634, 1876, 2934, 3742, 3851, 3955, 4019
PpsI GAGTC 8 cut(s) 503, 1634, 1876, 2934, 3742, 3851, 3955, 4019
Ppu21I YACGTR 1 cut(s) 4046
PpuMI RGGWCCY 2 cut(s) 3597, 4084
PscI ACATGT 4 cut(s) 860, 1461, 1707, 2577
PshAI GACNNNNGTC 1 cut(s) 3861
PshBI ATTAAT 2 cut(s) 389, 3546
PsiI TTATAA 2 cut(s) 2586, 2978
Psp5II RGGWCCY 2 cut(s) 3597, 4084
Psp6I CCWGG 4 cut(s) 270, 453, 752, 1161
PspFI CCCAGC 2 cut(s) 3397, 4181
PspGI CCWGG 4 cut(s) 270, 453, 752, 1161
PspN4I GGNNCC 4 cut(s) 3291, 3598, 3599, 4085
PspPI GGNCC 5 cut(s) 3389, 3478, 3597, 3634, 4084
PspPPI RGGWCCY 2 cut(s) 3597, 4084
PsrI GAACNNNNNNTAC 2 cut(s) 30, 62
PsuI RGATCY 3 cut(s) 1533, 2168, 3646
PvuII CAGCTG 1 cut(s) 4181
RsaI GTAC 6 cut(s) 48, 354, 438, 1545, 2487, 4044
RsaNI GTAC 6 cut(s) 47, 353, 437, 1544, 2486, 4043
RseI CAYNNNNRTG 4 cut(s) 1254, 1617, 2436, 3579
SapI GCTCTTC 5 cut(s) 465, 727, 2103, 2664, 4203
SatI GCNGC 7 cut(s) 135, 1008, 1241, 1808, 2042, 2258, 2752
Sau96I GGNCC 5 cut(s) 3389, 3478, 3597, 3634, 4084
SchI GAGTC 8 cut(s) 503, 1634, 1876, 2934, 3743, 3851, 3955, 4020
ScrFI CCNGG 5 cut(s) 272, 455, 656, 754, 1163
SduI GDGCHC 2 cut(s) 1529, 3457
SfaNI GCATC 7 cut(s) 253, 994, 1665, 2143, 2883, 3898, 3907
SinI GGWCC 4 cut(s) 3478, 3597, 3634, 4084
SmiMI CAYNNNNRTG 4 cut(s) 1254, 1617, 2436, 3579
SmlI CTYRAG 3 cut(s) 1111, 2219, 2942
SmoI CTYRAG 3 cut(s) 1111, 2219, 2942
SnaBI TACGTA 1 cut(s) 4046
SsiI CCGC 9 cut(s) 224, 408, 872, 1211, 2556, 2990, 3149, 3401, 3741
StyD4I CCNGG 5 cut(s) 270, 453, 654, 752, 1161
StyI CCWWGG 5 cut(s) 292, 2174, 2283, 2469, 3977
TaaI ACNGT 8 cut(s) 372, 606, 1060, 1619, 1942, 2815, 3853, 4096
TaiI ACGT 5 cut(s) 52, 566, 2913, 3305, 4048
TaqI TCGA 3 cut(s) 994, 2325, 3865
TaqII GACCGA 1 cut(s) 3466
TatI WGTACW 1 cut(s) 2485
TscAI CASTG 6 cut(s) 89, 507, 1350, 1624, 2433, 3822
TseFI GTSAC 5 cut(s) 856, 971, 1054, 2966, 4030
TseI GCWGC 7 cut(s) 134, 1007, 1240, 1807, 2041, 2257, 2751
Tsp45I GTSAC 5 cut(s) 856, 971, 1054, 2966, 4030
TspDTI ATGAA 4 cut(s) 390, 726, 2256, 3327
TspGWI ACGGA 3 cut(s) 1163, 1342, 2649
TspRI CASTG 6 cut(s) 89, 507, 1350, 1624, 2433, 3822
Van91I CCANNNNNTGG 1 cut(s) 3643
Vha464I CTTAAG 1 cut(s) 1111
VneI GTGCAC 2 cut(s) 1525, 3453
VpaK11BI GGWCC 4 cut(s) 3478, 3597, 3634, 4084
VspI ATTAAT 2 cut(s) 389, 3546
XbaI TCTAGA 1 cut(s) 3649
XceI RCATGY 5 cut(s) 864, 1465, 1711, 1783, 2581
XmiI GTMKAC 3 cut(s) 52, 1714, 3777
XmnI GAANNNNTTC 5 cut(s) 287, 663, 771, 1554, 2613
ZraI GACGTC 1 cut(s) 3303
Zsp2I ATGCAT 3 cut(s) 1336, 1413, 2158
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.