Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0001062

Physical Location & Seq

Genomic Coordinates Forward (+)

25380060 .. 25381361

Gene Structure 1302 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG215600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1302 bp

ATGTCATTGTTCGTCCTATTCCTTTTTTCACTCTTTGCTTCCATTGCTCAAGCTCAAATTCCCGCAAATGAAACTTTCAAACTTGTCAACGCAGGAGAATTTTGGCCTTATATTGTTGAATACGATGCATCCTATCGTATGCTCGATCTCTTTGCCTCCCCCTTCCAATTTGCTTTCTACAACACCACTCCCAACGCCTTCACTCTCGCTCTGCGCATGGGTTTGAGGAGATCTGAATCAAACTTTCATTGGGTTTGGGAGGCCAACCGGGGAAACCCAGTTGGCGAAAATGCCACCTTCACGCTTGGAACCAATGGAAACCTTGTCTTGGCCGATGGTGATGGTCGAGTGGCTTGGCAAACCAACACTGTTAACAAAGGGGTGGTAGGCTTCAAGTTGCTTCCAACCGGAAACATGGTTCTTTATAACTCAAAAGGCAAGTTCGTTTGGCAAAGCTTTGACTCCCCTACAGACACTCTTGTAGTAGGTCAATCACTACGTGCAGGAGCAGTAAGCAAACTCGTGAGTCGAGCCTCGGAGACTGAAAACAAAGATGGGCCTTATAGCTTGGTGATGGAGCCAGAAGGATTGGCTTTGTACTATAACAGCAAGAACTCTCCAAAGCCATTACTCTACTACAGATCCTCCAAATGGATTGCTGTTCCGAAGGGCTCATTACACCAGGTAACATTGAACGCTTCCCCGATAGAAGGGGGTCATGCTTATGACCTTACCTTGGAGTACCAAGTGGGCAACTCGACCTCCGGTGGAAATCTCATTCTAGCTCGACCGAAATACAATAGCACATCGACATGCCTTAGGCTCGGAATTGATGGAAATCTCAAGCTTTACACTTACTATAACAAGTTGCGTTATGGTGCATGGGAGACGACCTTCACTCTCTTTGATAAAGGTTCAGGAATATCTGAAAATGGGTGCCAATTGCCAGAGCGATGTGGGAACTTCGGCCTCTGTGAGAATAACCAATGTGTTGGTTGCCCATTGTCTAAGGGAATTTTGGGTTGGAGTGAGACCTGTGAGCCTGAGAAGCTTACTTCTTGTGGGGCAAAGAGCTTCCACTACTACAAAATTGAAGGGGTTGATCACTTCTTGAGCAAGTACACTAGTGGAGAAGCTGTGAAGGAGCTTGATTGTTCCAACAAGTGTGCTTTGGATTGCAAGTGTTTGGGTTTCTTTTACAACAGGGATGAATCAAGGTGTTGGATTGCTTATGAGTTGAAGACTTTGACCAAAGTTGACAAACCCAGTCATGTTGGTTACATTAAGGCACCCAATCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005829 GO:0006810 GO:0006833 GO:0008150 GO:0009505 GO:0012505 GO:0016020 GO:0030312 GO:0031090 GO:0042044 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0051179 GO:0051234 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin PAN_2 S_locus_glycop

Protein Analysis

433

Amino Acids

48.14

Weight (kDa)

8.11

Isoelectric Point (pI)

30.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B_lectin	PF01453	85 - 169	7e-18	D-mannose binding lectin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001062)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78850 AT1G78860
fragaria_vesca	FvH4_3g18371 FvH4_3g18380 FvH4_3g18383 FvH4_3g18410
malus_domestica	MD03G1242400.v1.1 MD11G1262100.v1.1 MD11G1262300.v1.1 MD11G1262400.v1.1 MD11G1262600.v1.1
prunus_persica	Prupe.4G165600_v2.0.a1 Prupe.4G166000_v2.0.a1 Prupe.4G166100_v2.0.a1 Prupe.4G166200_v2.0.a1
pyrus_communis	pycom11g23110 pycom11g23150
rosa_chinensis	RchiOBHm_Chr5g0031021 RchiOBHm_Chr5g0031031 RchiOBHm_Chr5g0031081 RchiOBHm_Chr5g0031091 RchiOBHm_Chr5g0031131 RchiOBHm_Chr5g0031141
rosa_laevigata	RLG00000033282 RLG00000033283 RLG00000033284 RLG00000033285
rosa_multiflora	Rmu_co8472871.1_g000001 Rmu_co8500049.1_g000001 Rmu_sc0001523.1_g000001 Rmu_sc0005489.1_g000008 Rmu_sc0020175.1_g000004 Rmu_sc0023422.1_g000001 Rmu_sc0023423.1_g000001
rosa_roxburghii	Rroxscaffold_1G00049150 Rroxscaffold_1G00049170 Rroxscaffold_1G00049190 Rroxscaffold_1G00049200 Rroxscaffold_1G00049210 Rroxscaffold_1G00049240
rosa_rugosa	Rorug05G0122300 Rorug05G0122400 Rorug05G0122500
rosa_samantha	Rh5AG215600 Rh5AG215700 Rh5AG216000 Rh5BG214800 Rh5BG214900 Rh5BG215000 Rh5BG215500 Rh5CG238900 Rh5DG219300 Rh5DG219400 Rh5DG219600 Rh5DG219900 Rh5DG220100
rosa_wichuraiana	Rw5G019730 Rw5G019740 Rw5G019750 Rw5G019760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	426
Acc16I	TGCGCA	1 cut(s)	215
AccB1I	GGYRCC	2 cut(s)	936, 1288
AciI	CCGC	1 cut(s)	63
AclWI	GGATC	1 cut(s)	636
AcoI	YGGCCR	1 cut(s)	330
AcsI	RAATTY	3 cut(s)	57, 98, 1014
AdeI	CACNNNGTG	1 cut(s)	500
AfaI	GTAC	3 cut(s)	599, 743, 1121
AfiI	CCNNNNNNNGG	4 cut(s)	328, 651, 710, 736
AgsI	TTSAA	6 cut(s)	79, 119, 394, 694, 1094, 1240
AhlI	ACTAGT	1 cut(s)	1124
AjnI	CCWGG	1 cut(s)	681
AjuI	GAANNNNNNNTTGG	2 cut(s)	1006, 1038
AloI	GAACNNNNNNTCC	2 cut(s)	402, 434
AluBI	AGCT	9 cut(s)	53, 456, 567, 785, 847, 1051, 1074, 1136, 1147
AluI	AGCT	9 cut(s)	53, 456, 567, 785, 847, 1051, 1074, 1136, 1147
Alw26I	GTCTC	3 cut(s)	533, 881, 1025
AlwI	GGATC	1 cut(s)	636
AoxI	GGCC	5 cut(s)	104, 261, 330, 557, 967
ApoI	RAATTY	3 cut(s)	57, 98, 1014
AspLEI	GCGC	1 cut(s)	216
AspS9I	GGNCC	1 cut(s)	557
AsuC2I	CCSGG	1 cut(s)	269
AsuHPI	GGTGA	2 cut(s)	350, 583
AxyI	CCTNAGG	1 cut(s)	818
BanI	GGYRCC	2 cut(s)	936, 1288
BanII	GRGCYC	1 cut(s)	674
BauI	CACGAG	1 cut(s)	521
BbsI	GAAGAC	1 cut(s)	1247
BccI	CCATC	5 cut(s)	329, 335, 548, 568, 827
BcgI	CGANNNNNNTGC	2 cut(s)	134, 168
BciT130I	CCWGG	1 cut(s)	683
BclI	TGATCA	1 cut(s)	1102
BcnI	CCSGG	1 cut(s)	269
BcoDI	GTCTC	3 cut(s)	533, 881, 1025
BcuI	ACTAGT	1 cut(s)	1124
BfaI	CTAG	2 cut(s)	782, 1125
BfmI	CTRYAG	2 cut(s)	468, 637
BglII	AGATCT	1 cut(s)	230
Bme1390I	CCNGG	2 cut(s)	269, 683
BmgT120I	GGNCC	1 cut(s)	557
BmiI	GGNNCC	4 cut(s)	310, 579, 938, 1290
BmrFI	CCNGG	2 cut(s)	269, 683
BmrI	ACTGGG	2 cut(s)	272, 1260
BmsI	GCATC	2 cut(s)	115, 137
BmuI	ACTGGG	2 cut(s)	272, 1260
BpiI	GAAGAC	1 cut(s)	1247
BpuEI	CTTGAG	3 cut(s)	33, 827, 1132
BpuMI	CCSGG	1 cut(s)	269
BsaAI	YACGTR	1 cut(s)	500
BsaBI	GATNNNNATC	2 cut(s)	235, 837
BsaI	GGTCTC	1 cut(s)	1025
BsaJI	CCNNGG	3 cut(s)	268, 534, 735
BsaWI	WCCGGW	2 cut(s)	407, 764
BsaXI	ACNNNNNCTCC	6 cut(s)	629, 659, 746, 776, 1122, 1152
Bsc4I	CCNNNNNNNGG	4 cut(s)	328, 651, 710, 736
Bse1I	ACTGG	2 cut(s)	278, 1266
Bse21I	CCTNAGG	1 cut(s)	818
Bse3DI	GCAATG	1 cut(s)	42
Bse8I	GATNNNNATC	2 cut(s)	235, 837
BseBI	CCWGG	1 cut(s)	683
BseDI	CCNNGG	3 cut(s)	268, 534, 735
BseGI	GGATG	2 cut(s)	128, 1213
BseJI	GATNNNNATC	2 cut(s)	235, 837
BseLI	CCNNNNNNNGG	4 cut(s)	328, 651, 710, 736
BseMI	GCAATG	1 cut(s)	42
BseMII	CTCAG	1 cut(s)	1035
BseNI	ACTGG	2 cut(s)	278, 1266
BseRI	GAGGAG	1 cut(s)	241
BsgI	GTGCAG	1 cut(s)	522
Bsh1285I	CGRYCG	1 cut(s)	791
BshFI	GGCC	5 cut(s)	106, 263, 332, 559, 969
BshNI	GGYRCC	2 cut(s)	936, 1288
BsiEI	CGRYCG	1 cut(s)	791
BsiSI	CCGG	3 cut(s)	268, 408, 765
BslI	CCNNNNNNNGG	4 cut(s)	328, 651, 710, 736
BsmAI	GTCTC	3 cut(s)	533, 881, 1025
BsmBI	CGTCTC	1 cut(s)	881
BsnI	GGCC	5 cut(s)	106, 263, 332, 559, 969
Bso31I	GGTCTC	1 cut(s)	1025
Bsp1286I	GDGCHC	1 cut(s)	674
Bsp143I	GATC	4 cut(s)	145, 230, 641, 1102
BspACI	CCGC	1 cut(s)	63
BspANI	GGCC	5 cut(s)	106, 263, 332, 559, 969
BspCNI	CTCAG	1 cut(s)	1036
BspLI	GGNNCC	4 cut(s)	310, 579, 938, 1290
BspPI	GGATC	1 cut(s)	636
BspT107I	GGYRCC	2 cut(s)	936, 1288
BspTNI	GGTCTC	1 cut(s)	1025
BsrDI	GCAATG	1 cut(s)	42
BsrI	ACTGG	2 cut(s)	278, 1266
BssECI	CCNNGG	3 cut(s)	268, 534, 735
BssMI	GATC	4 cut(s)	145, 230, 641, 1102
BssSI	CACGAG	1 cut(s)	521
BssT1I	CCWWGG	1 cut(s)	735
Bst2BI	CACGAG	1 cut(s)	521
Bst2UI	CCWGG	1 cut(s)	683
Bst4CI	ACNGT	1 cut(s)	370
BstBAI	YACGTR	1 cut(s)	500
BstDEI	CTNAG	3 cut(s)	818, 1008, 1044
BstF5I	GGATG	2 cut(s)	128, 1213
BstHHI	GCGC	1 cut(s)	216
BstKTI	GATC	4 cut(s)	148, 233, 644, 1105
BstMAI	GTCTC	3 cut(s)	533, 881, 1025
BstMBI	GATC	4 cut(s)	145, 230, 641, 1102
BstMCI	CGRYCG	1 cut(s)	791
BstMWI	GCNNNNNNNGC	2 cut(s)	44, 1048
BstNI	CCWGG	1 cut(s)	683
BstNSI	RCATGY	1 cut(s)	816
BstSCI	CCNGG	2 cut(s)	267, 681
BstSFI	CTRYAG	2 cut(s)	468, 637
BstV2I	GAAGAC	1 cut(s)	1247
BstX2I	RGATCY	2 cut(s)	230, 641
BstXI	CCANNNNNNTGG	1 cut(s)	992
BstYI	RGATCY	2 cut(s)	230, 641
Bsu36I	CCTNAGG	1 cut(s)	818
BsuRI	GGCC	5 cut(s)	106, 263, 332, 559, 969
BtgZI	GCGATG	1 cut(s)	967
BtsCI	GGATG	2 cut(s)	128, 1213
BtsIMutI	CAGTG	1 cut(s)	366
CfoI	GCGC	1 cut(s)	216
Cfr13I	GGNCC	1 cut(s)	557
CsiI	ACCWGGT	1 cut(s)	681
Csp6I	GTAC	3 cut(s)	598, 742, 1120
CviAII	CATG	6 cut(s)	217, 415, 719, 813, 882, 1271
CviQI	GTAC	3 cut(s)	598, 742, 1120
DdeI	CTNAG	3 cut(s)	818, 1008, 1044
DpnI	GATC	4 cut(s)	147, 232, 643, 1104
DpnII	GATC	4 cut(s)	145, 230, 641, 1102
DraIII	CACNNNGTG	1 cut(s)	500
EaeI	YGGCCR	1 cut(s)	330
Eco130I	CCWWGG	1 cut(s)	735
Eco24I	GRGCYC	1 cut(s)	674
Eco31I	GGTCTC	1 cut(s)	1025
Eco81I	CCTNAGG	1 cut(s)	818
EcoRII	CCWGG	1 cut(s)	681
EcoT14I	CCWWGG	1 cut(s)	735
EcoT22I	ATGCAT	1 cut(s)	130
EcoT38I	GRGCYC	1 cut(s)	674
ErhI	CCWWGG	1 cut(s)	735
Esp3I	CGTCTC	1 cut(s)	881
FaeI	CATG	6 cut(s)	220, 418, 722, 816, 885, 1274
FatI	CATG	6 cut(s)	216, 414, 718, 812, 881, 1270
FauI	CCCGC	1 cut(s)	70
FbaI	TGATCA	1 cut(s)	1102
FokI	GGATG	2 cut(s)	115, 1220
FriOI	GRGCYC	1 cut(s)	674
FspBI	CTAG	2 cut(s)	782, 1125
FspI	TGCGCA	1 cut(s)	215
GlaI	GCGC	1 cut(s)	215
HaeIII	GGCC	5 cut(s)	106, 263, 332, 559, 969
HapII	CCGG	3 cut(s)	268, 408, 765
HhaI	GCGC	1 cut(s)	216
Hin1II	CATG	6 cut(s)	220, 418, 722, 816, 885, 1274
Hin6I	GCGC	1 cut(s)	214
HinP1I	GCGC	1 cut(s)	214
HincII	GTYRAC	3 cut(s)	88, 373, 1258
HindII	GTYRAC	3 cut(s)	88, 373, 1258
HindIII	AAGCTT	3 cut(s)	454, 845, 1049
HinfI	GANTC	4 cut(s)	236, 461, 526, 1211
HpaI	GTTAAC	1 cut(s)	373
HpaII	CCGG	3 cut(s)	268, 408, 765
HphI	GGTGA	2 cut(s)	350, 583
Hpy166II	GTNNAC	4 cut(s)	88, 373, 1122, 1258
Hpy188I	TCNGA	5 cut(s)	235, 538, 666, 827, 928
Hpy188III	TCNNGA	3 cut(s)	523, 918, 1111
Hpy8I	GTNNAC	4 cut(s)	88, 373, 1122, 1258
HpyAV	CCTTC	9 cut(s)	172, 208, 307, 578, 661, 704, 904, 1088, 1135
HpyCH4III	ACNGT	1 cut(s)	370
HpyCH4IV	ACGT	1 cut(s)	499
HpyCH4V	TGCA	4 cut(s)	128, 503, 881, 1179
HpyF10VI	GCNNNNNNNGC	2 cut(s)	44, 1048
HpyF3I	CTNAG	3 cut(s)	818, 1008, 1044
HpySE526I	ACGT	1 cut(s)	499
Hsp92II	CATG	6 cut(s)	220, 418, 722, 816, 885, 1274
HspAI	GCGC	1 cut(s)	214
Ksp22I	TGATCA	1 cut(s)	1102
KspAI	GTTAAC	1 cut(s)	373
Kzo9I	GATC	4 cut(s)	145, 230, 641, 1102
LmnI	GCTCC	3 cut(s)	506, 577, 1144
LweI	GCATC	2 cut(s)	115, 137
MabI	ACCWGGT	1 cut(s)	681
MaeI	CTAG	2 cut(s)	782, 1125
MaeII	ACGT	1 cut(s)	499
MaeIII	GTNAC	2 cut(s)	685, 1277
MalI	GATC	4 cut(s)	147, 232, 643, 1104
MboI	GATC	4 cut(s)	145, 230, 641, 1102
MboII	GAAGA	1 cut(s)	1252
MfeI	CAATTG	1 cut(s)	941
MflI	RGATCY	2 cut(s)	230, 641
MhlI	GDGCHC	1 cut(s)	674
MluCI	AATT	7 cut(s)	57, 98, 167, 828, 941, 1014, 1089
MlyI	GAGTC	2 cut(s)	455, 535
MmeI	TCCRAC	4 cut(s)	428, 1004, 1182, 1202
MnlI	CCTC	7 cut(s)	166, 219, 253, 544, 655, 772, 980
Mph1103I	ATGCAT	1 cut(s)	130
MseI	TTAA	2 cut(s)	372, 1284
MslI	CAYNNNNRTG	2 cut(s)	723, 811
MspI	CCGG	3 cut(s)	268, 408, 765
MspR9I	CCNGG	2 cut(s)	269, 683
MunI	CAATTG	1 cut(s)	941
MvaI	CCWGG	1 cut(s)	683
MwoI	GCNNNNNNNGC	2 cut(s)	44, 1048
NciI	CCSGG	1 cut(s)	269
NdeII	GATC	4 cut(s)	145, 230, 641, 1102
NlaIII	CATG	6 cut(s)	220, 418, 722, 816, 885, 1274
NlaIV	GGNNCC	4 cut(s)	310, 579, 938, 1290
NsbI	TGCGCA	1 cut(s)	215
NsiI	ATGCAT	1 cut(s)	130
NspI	RCATGY	1 cut(s)	816
PfeI	GAWTC	2 cut(s)	236, 1211
PleI	GAGTC	2 cut(s)	455, 534
PpsI	GAGTC	2 cut(s)	455, 534
Ppu21I	YACGTR	1 cut(s)	500
PsiI	TTATAA	1 cut(s)	426
Psp6I	CCWGG	1 cut(s)	681
PspGI	CCWGG	1 cut(s)	681
PspN4I	GGNNCC	4 cut(s)	310, 579, 938, 1290
PspPI	GGNCC	1 cut(s)	557
PsuI	RGATCY	2 cut(s)	230, 641
RsaI	GTAC	3 cut(s)	599, 743, 1121
RsaNI	GTAC	3 cut(s)	598, 742, 1120
RseI	CAYNNNNRTG	2 cut(s)	723, 811
SaqAI	TTAA	2 cut(s)	372, 1284
Sau3AI	GATC	4 cut(s)	145, 230, 641, 1102
Sau96I	GGNCC	1 cut(s)	557
SchI	GAGTC	2 cut(s)	455, 535
ScrFI	CCNGG	2 cut(s)	269, 683
SduI	GDGCHC	1 cut(s)	674
SexAI	ACCWGGT	1 cut(s)	681
SfaNI	GCATC	2 cut(s)	115, 137
SfcI	CTRYAG	2 cut(s)	468, 637
SmiMI	CAYNNNNRTG	2 cut(s)	723, 811
SmlI	CTYRAG	3 cut(s)	48, 842, 1111
SmoI	CTYRAG	3 cut(s)	48, 842, 1111
SpeI	ACTAGT	1 cut(s)	1124
Sse9I	AATT	7 cut(s)	57, 98, 167, 828, 941, 1014, 1089
SsiI	CCGC	1 cut(s)	63
SspMI	CTAG	2 cut(s)	782, 1125
StyD4I	CCNGG	2 cut(s)	267, 681
StyI	CCWWGG	1 cut(s)	735
TaaI	ACNGT	1 cut(s)	370
TaiI	ACGT	1 cut(s)	502
TaqI	TCGA	6 cut(s)	144, 346, 529, 758, 787, 809
TaqII	GACCGA	1 cut(s)	805
TasI	AATT	7 cut(s)	57, 98, 167, 828, 941, 1014, 1089
TatI	WGTACW	2 cut(s)	597, 1119
TfiI	GAWTC	2 cut(s)	236, 1211
Tru1I	TTAA	2 cut(s)	372, 1284
Tru9I	TTAA	2 cut(s)	372, 1284
TscAI	CASTG	1 cut(s)	373
TspDTI	ATGAA	3 cut(s)	84, 236, 1224
TspRI	CASTG	1 cut(s)	373
XapI	RAATTY	3 cut(s)	57, 98, 1014
XceI	RCATGY	1 cut(s)	816
XspI	CTAG	2 cut(s)	782, 1125
Zsp2I	ATGCAT	1 cut(s)	130

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.