Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0001062

Physical Location & Seq

Genomic Coordinates Forward (+)

9613836 .. 9615393

Gene Structure 1558 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G165600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1302 bp

ATGTCCCTGCCTTTCATATTCCTTGTTTCATTCTTTGCTTTCATTGCTCAAGCCCAGGTTCCAGCAAATGAAACTTTCAAATATGTCAATGAAGGAGAATTTGGGCAATACATTATAGAATATGATGGAAACTATCGTCCGCTCGATACTTTTGCATCCCCATTTCAACTTGCTTTCTACAACACCACCCCCAACGCCTACACTCTTGCTCTGCGCATGGGTTTGAGGCGTTCGGAATCACTCATCCGTTGGGTTTGGGAGGCCAACCGGGGGAACCCGGTCGGCGAAAAAGCCACCTTCACATTCGGGACTGATGGAAACCTTGTCTTGGCCAATGCCGATGGTCGAGTGGCTTGGCAAACCAACACCCGCAACAAAGGTGTGGTAGGCTTCAAGTTGCTCTCAAATGGCAACATGGTGCTTTACAACTCAAAGGGTAACTTTGTTTGGCAAAGTTTTCACTACCCAACAGACACTTTGCTGGTAGGCCAATCTCTACGAGTTGGGGGCGTAACCAAGCTAGTGAGCCGGGCTTCAGAGACAGAAAACAAAGATGGATCTTATAGCTTCGTGATGGAGCCAAAACGTTTGGCTTTGTACTACAAGAGCAAGAACTCCCCAAAGCCAATAGTCTACTTCACATCTTCAAAATTGATAGATGTTGGCAAAGGCTCATTGGAACATGTGACTTTGAATTGTTACCCGGTAAGTAGTGATGATTCTTCTTATGACTTAGCCTTGATGTATGAACCGGGCAACTCTATCTCAGGTTTTAATCTCGTTCTAGCTACAACCAAATACAACGGCACATCATCATTCCTCAGGCTTGAAATTGATGGAAATTTGAAGGTTTACACTTACTATAATAAGGTGAGGTATGGTGCATGGGAGGTGCCCTTCACTCTTTTTGATAAAGATTCAATATTTGAAGTTGGGTGCCAATTGCCGGAGCGATGCGGGAGCTTTGGCCTTTGTGAGGACAACCAATGCGTCGGTTGCCCTACGCCTAAGGGAGTAGTGGCGTGGAGTGAGAGTTGTGAGGCTGAGAAGCTAACTTCTTGCGGGGCAAAGAGCTTCCGCTACTACAAAGTTGAAGGGGTTGATCATTTCTCGAGCAAATACAATGAGGGATATGCTATCAAGGAGAGTGATTGTGGCAAGAAGTGTACTTTGGATTGCAAGTGTTTGGGATACTTTTACAACCGAGATACGTCAAGGTGTTGGATAGCTTATGATTTGAAAACCTTGACCAAAGTTGCCAATTCAACTCATGTGGGTTACATCAAAGCTCCTAATCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005829 GO:0006810 GO:0006833 GO:0008150 GO:0009505 GO:0012505 GO:0016020 GO:0030312 GO:0031090 GO:0042044 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0051179 GO:0051234 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin PAN_2 S_locus_glycop

Protein Analysis

434

Amino Acids

48.58

Weight (kDa)

8.27

Isoelectric Point (pI)

33.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001062)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78850 AT1G78860
fragaria_vesca	FvH4_3g18371 FvH4_3g18380 FvH4_3g18383 FvH4_3g18410
malus_domestica	MD03G1242400.v1.1 MD11G1262100.v1.1 MD11G1262300.v1.1 MD11G1262400.v1.1 MD11G1262600.v1.1
prunus_persica	Prupe.4G165600_v2.0.a1 Prupe.4G166000_v2.0.a1 Prupe.4G166100_v2.0.a1 Prupe.4G166200_v2.0.a1
pyrus_communis	pycom11g23110 pycom11g23150
rosa_chinensis	RchiOBHm_Chr5g0031021 RchiOBHm_Chr5g0031031 RchiOBHm_Chr5g0031081 RchiOBHm_Chr5g0031091 RchiOBHm_Chr5g0031131 RchiOBHm_Chr5g0031141
rosa_laevigata	RLG00000033282 RLG00000033283 RLG00000033284 RLG00000033285
rosa_multiflora	Rmu_co8472871.1_g000001 Rmu_co8500049.1_g000001 Rmu_sc0001523.1_g000001 Rmu_sc0005489.1_g000008 Rmu_sc0020175.1_g000004 Rmu_sc0023422.1_g000001 Rmu_sc0023423.1_g000001
rosa_roxburghii	Rroxscaffold_1G00049150 Rroxscaffold_1G00049170 Rroxscaffold_1G00049190 Rroxscaffold_1G00049200 Rroxscaffold_1G00049210 Rroxscaffold_1G00049240
rosa_rugosa	Rorug05G0122300 Rorug05G0122400 Rorug05G0122500
rosa_samantha	Rh5AG215600 Rh5AG215700 Rh5AG216000 Rh5BG214800 Rh5BG214900 Rh5BG215000 Rh5BG215500 Rh5CG238900 Rh5DG219300 Rh5DG219400 Rh5DG219600 Rh5DG219900 Rh5DG220100
rosa_wichuraiana	Rw5G019730 Rw5G019740 Rw5G019750 Rw5G019760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	215
AccB1I	GGYRCC	2 cut(s)	892, 936
AccBSI	CCGCTC	1 cut(s)	142
AccI	GTMKAC	1 cut(s)	633
AciI	CCGC	5 cut(s)	140, 370, 957, 1062, 1078
AclI	AACGTT	1 cut(s)	586
AclWI	GGATC	1 cut(s)	565
AcoI	YGGCCR	1 cut(s)	330
AcsI	RAATTY	2 cut(s)	98, 841
AcuI	CTGAAG	1 cut(s)	519
AfaI	GTAC	2 cut(s)	599, 1168
AfiI	CCNNNNNNNGG	4 cut(s)	270, 328, 946, 976
AflIII	ACRYGT	1 cut(s)	682
AjnI	CCWGG	1 cut(s)	54
AjuI	GAANNNNNNNTTGG	4 cut(s)	84, 116, 1154, 1186
AluBI	AGCT	8 cut(s)	520, 567, 788, 963, 1051, 1074, 1229, 1289
AluI	AGCT	8 cut(s)	520, 567, 788, 963, 1051, 1074, 1229, 1289
Alw26I	GTCTC	1 cut(s)	533
AlwI	GGATC	1 cut(s)	565
Ama87I	CYCGRG	1 cut(s)	1111
AoxI	GGCC	4 cut(s)	261, 330, 487, 967
ApoI	RAATTY	2 cut(s)	98, 841
AspLEI	GCGC	1 cut(s)	216
AsuC2I	CCSGG	5 cut(s)	269, 278, 530, 704, 753
AsuHPI	GGTGA	1 cut(s)	883
AvaI	CYCGRG	1 cut(s)	1111
AxyI	CCTNAGG	2 cut(s)	821, 1008
BaeGI	GKGCMC	1 cut(s)	897
BalI	TGGCCA	1 cut(s)	332
BanI	GGYRCC	2 cut(s)	892, 936
BccI	CCATC	6 cut(s)	119, 308, 335, 548, 568, 830
BceAI	ACGGC	1 cut(s)	820
BcgI	CGANNNNNNTGC	2 cut(s)	134, 168
BciT130I	CCWGG	1 cut(s)	56
BciVI	GTATCC	1 cut(s)	1184
BclI	TGATCA	1 cut(s)	1102
BcnI	CCSGG	5 cut(s)	269, 278, 530, 704, 753
BcoDI	GTCTC	1 cut(s)	533
BfaI	CTAG	2 cut(s)	521, 785
BfuI	GTATCC	1 cut(s)	1184
Bme1390I	CCNGG	6 cut(s)	56, 269, 278, 530, 704, 753
BmeT110I	CYCGRG	1 cut(s)	1111
BmiI	GGNNCC	5 cut(s)	60, 275, 579, 894, 938
BmrFI	CCNGG	6 cut(s)	56, 269, 278, 530, 704, 753
BmsI	GCATC	2 cut(s)	164, 944
BpuEI	CTTGAG	1 cut(s)	33
BpuMI	CCSGG	5 cut(s)	269, 278, 530, 704, 753
BsaJI	CCNNGG	2 cut(s)	54, 268
BsaXI	ACNNNNNCTCC	2 cut(s)	1018, 1048
Bsc4I	CCNNNNNNNGG	4 cut(s)	270, 328, 946, 976
Bse21I	CCTNAGG	2 cut(s)	821, 1008
Bse3DI	GCAATG	1 cut(s)	42
BseBI	CCWGG	1 cut(s)	56
BseDI	CCNNGG	2 cut(s)	54, 268
BseGI	GGATG	2 cut(s)	155, 243
BseLI	CCNNNNNNNGG	4 cut(s)	270, 328, 946, 976
BseMI	GCAATG	1 cut(s)	42
BseMII	CTCAG	3 cut(s)	780, 835, 1035
BseSI	GKGCMC	1 cut(s)	897
Bsh1285I	CGRYCG	1 cut(s)	282
BshFI	GGCC	4 cut(s)	263, 332, 489, 969
BshNI	GGYRCC	2 cut(s)	892, 936
BsiEI	CGRYCG	1 cut(s)	282
BsiHKCI	CYCGRG	1 cut(s)	1111
BsiSI	CCGG	6 cut(s)	268, 278, 529, 704, 752, 947
BslFI	GGGAC	1 cut(s)	322
BslI	CCNNNNNNNGG	4 cut(s)	270, 328, 946, 976
BsmAI	GTCTC	1 cut(s)	533
BsmFI	GGGAC	1 cut(s)	322
BsnI	GGCC	4 cut(s)	263, 332, 489, 969
BsoBI	CYCGRG	1 cut(s)	1111
Bsp1286I	GDGCHC	1 cut(s)	897
Bsp143I	GATC	2 cut(s)	557, 1102
BspACI	CCGC	5 cut(s)	140, 370, 957, 1062, 1078
BspANI	GGCC	4 cut(s)	263, 332, 489, 969
BspCNI	CTCAG	3 cut(s)	779, 834, 1036
BspLI	GGNNCC	5 cut(s)	60, 275, 579, 894, 938
BspPI	GGATC	1 cut(s)	565
BspT107I	GGYRCC	2 cut(s)	892, 936
BsrBI	CCGCTC	1 cut(s)	142
BsrDI	GCAATG	1 cut(s)	42
BssECI	CCNNGG	2 cut(s)	54, 268
BssMI	GATC	2 cut(s)	557, 1102
Bst2UI	CCWGG	1 cut(s)	56
BstDEI	CTNAG	5 cut(s)	733, 766, 821, 1008, 1044
BstENI	CCTNNNNNAGG	1 cut(s)	974
BstF5I	GGATG	2 cut(s)	155, 243
BstHHI	GCGC	1 cut(s)	216
BstKTI	GATC	2 cut(s)	560, 1105
BstMAI	GTCTC	1 cut(s)	533
BstMBI	GATC	2 cut(s)	557, 1102
BstMCI	CGRYCG	1 cut(s)	282
BstMWI	GCNNNNNNNGC	2 cut(s)	44, 996
BstNI	CCWGG	1 cut(s)	56
BstNSI	RCATGY	1 cut(s)	686
BstSCI	CCNGG	6 cut(s)	54, 267, 276, 528, 702, 751
BstSLI	GKGCMC	1 cut(s)	897
BstX2I	RGATCY	1 cut(s)	557
BstYI	RGATCY	1 cut(s)	557
Bsu36I	CCTNAGG	2 cut(s)	821, 1008
BsuI	GTATCC	1 cut(s)	1184
BsuRI	GGCC	4 cut(s)	263, 332, 489, 969
BtgZI	GCGATG	1 cut(s)	967
BtsCI	GGATG	2 cut(s)	155, 243
CfoI	GCGC	1 cut(s)	216
CseI	GACGC	1 cut(s)	979
Csp6I	GTAC	2 cut(s)	598, 1167
CspCI	CAANNNNNGTGG	2 cut(s)	1254, 1289
CviAII	CATG	5 cut(s)	217, 415, 683, 885, 1271
CviQI	GTAC	2 cut(s)	598, 1167
DdeI	CTNAG	5 cut(s)	733, 766, 821, 1008, 1044
DpnI	GATC	2 cut(s)	559, 1104
DpnII	GATC	2 cut(s)	557, 1102
EaeI	YGGCCR	1 cut(s)	330
Eco57I	CTGAAG	1 cut(s)	519
Eco81I	CCTNAGG	2 cut(s)	821, 1008
Eco88I	CYCGRG	1 cut(s)	1111
EcoNI	CCTNNNNNAGG	1 cut(s)	974
EcoRII	CCWGG	1 cut(s)	54
FaeI	CATG	5 cut(s)	220, 418, 686, 888, 1274
FalI	AAGNNNNNCTT	2 cut(s)	425, 457
FaqI	GGGAC	1 cut(s)	322
FatI	CATG	5 cut(s)	216, 414, 682, 884, 1270
FauI	CCCGC	3 cut(s)	377, 950, 1055
FbaI	TGATCA	1 cut(s)	1102
FblI	GTMKAC	1 cut(s)	633
FokI	GGATG	2 cut(s)	142, 230
FspBI	CTAG	2 cut(s)	521, 785
FspI	TGCGCA	1 cut(s)	215
GlaI	GCGC	1 cut(s)	215
HaeIII	GGCC	4 cut(s)	263, 332, 489, 969
HapII	CCGG	6 cut(s)	268, 278, 529, 704, 752, 947
HgaI	GACGC	1 cut(s)	979
HhaI	GCGC	1 cut(s)	216
Hin1II	CATG	5 cut(s)	220, 418, 686, 888, 1274
Hin6I	GCGC	1 cut(s)	214
HinP1I	GCGC	1 cut(s)	214
HinfI	GANTC	3 cut(s)	236, 719, 917
HpaII	CCGG	6 cut(s)	268, 278, 529, 704, 752, 947
HphI	GGTGA	1 cut(s)	883
Hpy166II	GTNNAC	3 cut(s)	634, 853, 1167
Hpy188I	TCNGA	2 cut(s)	235, 538
Hpy188III	TCNNGA	3 cut(s)	307, 571, 1111
Hpy8I	GTNNAC	3 cut(s)	634, 853, 1167
Hpy99I	CGWCG	1 cut(s)	995
HpyAV	CCTTC	5 cut(s)	86, 307, 841, 907, 1088
HpyCH4IV	ACGT	2 cut(s)	586, 1211
HpyCH4V	TGCA	3 cut(s)	155, 884, 1179
HpyF10VI	GCNNNNNNNGC	2 cut(s)	44, 996
HpyF3I	CTNAG	5 cut(s)	733, 766, 821, 1008, 1044
HpySE526I	ACGT	2 cut(s)	586, 1211
Hsp92II	CATG	5 cut(s)	220, 418, 686, 888, 1274
HspAI	GCGC	1 cut(s)	214
Ksp22I	TGATCA	1 cut(s)	1102
Kzo9I	GATC	2 cut(s)	557, 1102
LmnI	GCTCC	4 cut(s)	577, 949, 960, 1294
LweI	GCATC	2 cut(s)	164, 944
MaeI	CTAG	2 cut(s)	521, 785
MaeII	ACGT	2 cut(s)	586, 1211
MaeIII	GTNAC	5 cut(s)	437, 511, 685, 698, 1277
MalI	GATC	2 cut(s)	559, 1104
MbiI	CCGCTC	1 cut(s)	142
MboI	GATC	2 cut(s)	557, 1102
MboII	GAAGA	2 cut(s)	636, 714
MfeI	CAATTG	1 cut(s)	941
MflI	RGATCY	1 cut(s)	557
MhlI	GDGCHC	1 cut(s)	897
MlsI	TGGCCA	1 cut(s)	332
MluCI	AATT	7 cut(s)	98, 650, 694, 831, 841, 941, 1261
MluNI	TGGCCA	1 cut(s)	332
MmeI	TCCRAC	1 cut(s)	1202
MnlI	CCTC	8 cut(s)	219, 253, 830, 867, 883, 970, 1033, 1120
Mox20I	TGGCCA	1 cut(s)	332
MscI	TGGCCA	1 cut(s)	332
MseI	TTAA	2 cut(s)	774, 1300
Msp20I	TGGCCA	1 cut(s)	332
MspI	CCGG	6 cut(s)	268, 278, 529, 704, 752, 947
MspR9I	CCNGG	6 cut(s)	56, 269, 278, 530, 704, 753
MunI	CAATTG	1 cut(s)	941
MvaI	CCWGG	1 cut(s)	56
MwoI	GCNNNNNNNGC	2 cut(s)	44, 996
NciI	CCSGG	5 cut(s)	269, 278, 530, 704, 753
NdeII	GATC	2 cut(s)	557, 1102
NlaIII	CATG	5 cut(s)	220, 418, 686, 888, 1274
NlaIV	GGNNCC	5 cut(s)	60, 275, 579, 894, 938
NmuCI	GTSAC	1 cut(s)	685
NsbI	TGCGCA	1 cut(s)	215
NspI	RCATGY	1 cut(s)	686
PaeR7I	CTCGAG	1 cut(s)	1111
PciI	ACATGT	1 cut(s)	682
PfeI	GAWTC	3 cut(s)	236, 719, 917
PscI	ACATGT	1 cut(s)	682
Psp1406I	AACGTT	1 cut(s)	586
Psp6I	CCWGG	1 cut(s)	54
PspGI	CCWGG	1 cut(s)	54
PspN4I	GGNNCC	5 cut(s)	60, 275, 579, 894, 938
PsuI	RGATCY	1 cut(s)	557
RsaI	GTAC	2 cut(s)	599, 1168
RsaNI	GTAC	2 cut(s)	598, 1167
SaqAI	TTAA	2 cut(s)	774, 1300
Sau3AI	GATC	2 cut(s)	557, 1102
ScrFI	CCNGG	6 cut(s)	56, 269, 278, 530, 704, 753
SduI	GDGCHC	1 cut(s)	897
SfaNI	GCATC	2 cut(s)	164, 944
Sfr274I	CTCGAG	1 cut(s)	1111
SlaI	CTCGAG	1 cut(s)	1111
SmlI	CTYRAG	2 cut(s)	48, 1111
SmoI	CTYRAG	2 cut(s)	48, 1111
Sse9I	AATT	7 cut(s)	98, 650, 694, 831, 841, 941, 1261
SsiI	CCGC	5 cut(s)	140, 370, 957, 1062, 1078
SspI	AATATT	1 cut(s)	924
SspMI	CTAG	2 cut(s)	521, 785
StyD4I	CCNGG	6 cut(s)	54, 267, 276, 528, 702, 751
TaiI	ACGT	2 cut(s)	589, 1214
TaqI	TCGA	3 cut(s)	144, 346, 1112
TasI	AATT	7 cut(s)	98, 650, 694, 831, 841, 941, 1261
TatI	WGTACW	2 cut(s)	597, 1166
TfiI	GAWTC	3 cut(s)	236, 719, 917
Tru1I	TTAA	2 cut(s)	774, 1300
Tru9I	TTAA	2 cut(s)	774, 1300
TseFI	GTSAC	1 cut(s)	685
Tsp45I	GTSAC	1 cut(s)	685
TspDTI	ATGAA	6 cut(s)	4, 18, 31, 84, 105, 762
TspGWI	ACGGA	1 cut(s)	236
XagI	CCTNNNNNAGG	1 cut(s)	974
XapI	RAATTY	2 cut(s)	98, 841
XceI	RCATGY	1 cut(s)	686
XhoI	CTCGAG	1 cut(s)	1111
XmiI	GTMKAC	1 cut(s)	633
XspI	CTAG	2 cut(s)	521, 785

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.