Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0001062

Physical Location & Seq

Genomic Coordinates Reverse (-)

37737179 .. 37738258

Gene Structure 1080 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1262400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

ATGGGTTTGAGGTGGTCAGAGTCACTCTTTCGATGCGTTTGGGAAGCCAACCGGGGAAACCCGGTCTGCGAAAATGCCACCCTAACATTTGGTACGAACGGAAACCTCGTCTTGGCCCATGCCAATGGAAAAGTGGCTTGGCAAACAAACACCGCCAACAAAGGTGTCGTAGGCTTCAAGTTGCTTCCAAATGGCAACATGGTCCTTCACAACTCGAAGGGCAAGTGTATTTGGCAAAGCTTTGACTACCCAACAAACACTTTGCTCGTGGGTCAATCTCTGCGAGCTGGGGTGGTAAGCAAGCTCGTGAGTCGTGCATCTAAGAAAGAAAACAAAGATGGACCTTACAGCTTGGTGATGGAGCCCAAAGGGTTGGCTTTGTACTACAAGAGCAGCAACTATCCAAAACCGCAACTCTACTTCTCATTTTCTCAACGGATTCCTATTCAGATGAACTCATTGATCCTCGTGACACTAAACAGTGCCCCGGAAACTGATGAGGGTCATGCTTATGACCTAACACTAGAATATCAAGAAGCCAACTCTTCCTCAAGTGAAACCTTTTTTCTCGGGAGGCCGAAATACAACAGCACATCCACGCTCCTTGGGCTTGGAATCGATGGGAATGTCAAGCTTTACACTTATAACGACAAGGTGGATACCGGCGCATGGGAGGTGACCTTCTCTCTTTTTGATAGAGATAACTCGATATGGGAAACTGAGTGCCAATTGCCTGAGCGATGTGGGACATTTGGCCTTTGTGAGGACAGTCAATGTGTTGCCTGCCCTTCTTCTAAGGGACTATTGGGTTGGGGTAAAAGTTGTGCGCTTGAGAAGCTGACTTCATGCGATGCAAAGAGCTTCCGCTACTATAAAGTTGAAGGAATTGATCATTTTTCGAGCAAGTACACTAGTGGAGCTGCTGTGAAACAAAACGACTGTGCTAAGAAGTGCACTTCGGACAGTAAGTGTTTGGGCTACTTTTTCAAGCAGGATACATCAGGATATTATGATTTGAAAACATTGACCAAAGTAGCCAATTCAACTCATGTGGGTTACATCAAGACCCATAACCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005829 GO:0006810 GO:0006833 GO:0008150 GO:0009505 GO:0012505 GO:0016020 GO:0030312 GO:0031090 GO:0042044 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0051179 GO:0051234 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin PAN_2 S_locus_glycop

Protein Analysis

360

Amino Acids

39.82

Weight (kDa)

8.55

Isoelectric Point (pI)

29.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B_lectin	PF01453	12 - 98	4.8e-19	D-mannose binding lectin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001062)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78850 AT1G78860
fragaria_vesca	FvH4_3g18371 FvH4_3g18380 FvH4_3g18383 FvH4_3g18410
malus_domestica	MD03G1242400.v1.1 MD11G1262100.v1.1 MD11G1262300.v1.1 MD11G1262400.v1.1 MD11G1262600.v1.1
prunus_persica	Prupe.4G165600_v2.0.a1 Prupe.4G166000_v2.0.a1 Prupe.4G166100_v2.0.a1 Prupe.4G166200_v2.0.a1
pyrus_communis	pycom11g23110 pycom11g23150
rosa_chinensis	RchiOBHm_Chr5g0031021 RchiOBHm_Chr5g0031031 RchiOBHm_Chr5g0031081 RchiOBHm_Chr5g0031091 RchiOBHm_Chr5g0031131 RchiOBHm_Chr5g0031141
rosa_laevigata	RLG00000033282 RLG00000033283 RLG00000033284 RLG00000033285
rosa_multiflora	Rmu_co8472871.1_g000001 Rmu_co8500049.1_g000001 Rmu_sc0001523.1_g000001 Rmu_sc0005489.1_g000008 Rmu_sc0020175.1_g000004 Rmu_sc0023422.1_g000001 Rmu_sc0023423.1_g000001
rosa_roxburghii	Rroxscaffold_1G00049150 Rroxscaffold_1G00049170 Rroxscaffold_1G00049190 Rroxscaffold_1G00049200 Rroxscaffold_1G00049210 Rroxscaffold_1G00049240
rosa_rugosa	Rorug05G0122300 Rorug05G0122400 Rorug05G0122500
rosa_samantha	Rh5AG215600 Rh5AG215700 Rh5AG216000 Rh5BG214800 Rh5BG214900 Rh5BG215000 Rh5BG215500 Rh5CG238900 Rh5DG219300 Rh5DG219400 Rh5DG219600 Rh5DG219900 Rh5DG220100
rosa_wichuraiana	Rw5G019730 Rw5G019740 Rw5G019750 Rw5G019760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	645
AciI	CCGC	3 cut(s)	153, 410, 865
AclWI	GGATC	1 cut(s)	457
AfaI	GTAC	3 cut(s)	94, 383, 908
AfiI	CCNNNNNNNGG	3 cut(s)	112, 669, 763
AgsI	TTSAA	5 cut(s)	178, 881, 988, 1018, 1044
AhlI	ACTAGT	1 cut(s)	911
AjuI	GAANNNNNNNTTGG	2 cut(s)	121, 153
AluBI	AGCT	8 cut(s)	240, 287, 304, 351, 634, 838, 861, 920
AluI	AGCT	8 cut(s)	240, 287, 304, 351, 634, 838, 861, 920
Alw21I	GWGCWC	1 cut(s)	956
Alw44I	GTGCAC	1 cut(s)	952
AlwI	GGATC	1 cut(s)	457
Ama87I	CYCGRG	1 cut(s)	569
AoxI	GGCC	3 cut(s)	114, 575, 754
ApaLI	GTGCAC	1 cut(s)	952
ApeKI	GCWGC	2 cut(s)	393, 920
AspLEI	GCGC	2 cut(s)	668, 829
AspS9I	GGNCC	3 cut(s)	115, 202, 341
AsuC2I	CCSGG	3 cut(s)	53, 62, 488
AsuHPI	GGTGA	2 cut(s)	367, 688
AvaI	CYCGRG	1 cut(s)	569
AvaII	GGWCC	2 cut(s)	202, 341
BaeGI	GKGCMC	2 cut(s)	487, 956
BanII	GRGCYC	1 cut(s)	366
BauI	CACGAG	3 cut(s)	266, 305, 467
Bbv12I	GWGCWC	1 cut(s)	956
BbvI	GCAGC	2 cut(s)	405, 907
BccI	CCATC	3 cut(s)	332, 352, 614
BciVI	GTATCC	2 cut(s)	652, 988
BclI	TGATCA	1 cut(s)	889
BcnI	CCSGG	3 cut(s)	53, 62, 488
BcuI	ACTAGT	1 cut(s)	911
BfaI	CTAG	2 cut(s)	524, 912
BfuI	GTATCC	2 cut(s)	652, 988
BisI	GCNGC	2 cut(s)	394, 921
BlsI	GCNGC	2 cut(s)	395, 922
Bme1390I	CCNGG	3 cut(s)	53, 62, 488
Bme18I	GGWCC	2 cut(s)	202, 341
BmeT110I	CYCGRG	1 cut(s)	569
BmgT120I	GGNCC	3 cut(s)	115, 202, 341
BmiI	GGNNCC	1 cut(s)	363
BmrFI	CCNGG	3 cut(s)	53, 62, 488
BmsI	GCATC	3 cut(s)	23, 326, 841
Bpu10I	CCTNAGC	1 cut(s)	735
BpuEI	CTTGAG	2 cut(s)	535, 851
BpuMI	CCSGG	3 cut(s)	53, 62, 488
Bsa29I	ATCGAT	1 cut(s)	618
BsaJI	CCNNGG	3 cut(s)	52, 486, 604
BsaXI	ACNNNNNCTCC	2 cut(s)	909, 939
Bsc4I	CCNNNNNNNGG	3 cut(s)	112, 669, 763
Bse118I	RCCGGY	1 cut(s)	662
BseCI	ATCGAT	1 cut(s)	618
BseDI	CCNNGG	3 cut(s)	52, 486, 604
BseGI	GGATG	1 cut(s)	593
BseLI	CCNNNNNNNGG	3 cut(s)	112, 669, 763
BseMII	CTCAG	2 cut(s)	711, 726
BseSI	GKGCMC	2 cut(s)	487, 956
BseXI	GCAGC	2 cut(s)	405, 907
BseYI	CCCAGC	1 cut(s)	287
BshFI	GGCC	3 cut(s)	116, 577, 756
BshVI	ATCGAT	1 cut(s)	618
BsiHKAI	GWGCWC	1 cut(s)	956
BsiHKCI	CYCGRG	1 cut(s)	569
BsiSI	CCGG	4 cut(s)	52, 62, 488, 663
BslFI	GGGAC	2 cut(s)	760, 813
BslI	CCNNNNNNNGG	3 cut(s)	112, 669, 763
BsmFI	GGGAC	2 cut(s)	760, 813
BsnI	GGCC	3 cut(s)	116, 577, 756
BsoBI	CYCGRG	1 cut(s)	569
Bsp1286I	GDGCHC	3 cut(s)	366, 487, 956
Bsp143I	GATC	2 cut(s)	462, 889
BspACI	CCGC	3 cut(s)	153, 410, 865
BspANI	GGCC	3 cut(s)	116, 577, 756
BspCNI	CTCAG	2 cut(s)	712, 727
BspDI	ATCGAT	1 cut(s)	618
BspLI	GGNNCC	1 cut(s)	363
BspPI	GGATC	1 cut(s)	457
BsrFI	RCCGGY	1 cut(s)	662
BssAI	RCCGGY	1 cut(s)	662
BssECI	CCNNGG	3 cut(s)	52, 486, 604
BssMI	GATC	2 cut(s)	462, 889
BssSI	CACGAG	3 cut(s)	266, 305, 467
BssT1I	CCWWGG	1 cut(s)	604
Bst2BI	CACGAG	3 cut(s)	266, 305, 467
Bst4CI	ACNGT	4 cut(s)	482, 770, 941, 965
Bst6I	CTCTTC	1 cut(s)	550
BstC8I	GCNNGC	3 cut(s)	285, 302, 784
BstDEI	CTNAG	5 cut(s)	321, 720, 735, 795, 945
BstEII	GGTNACC	1 cut(s)	676
BstENI	CCTNNNNNAGG	1 cut(s)	761
BstF5I	GGATG	1 cut(s)	593
BstHHI	GCGC	2 cut(s)	668, 829
BstKTI	GATC	2 cut(s)	465, 892
BstMBI	GATC	2 cut(s)	462, 889
BstMWI	GCNNNNNNNGC	2 cut(s)	607, 835
BstPI	GGTNACC	1 cut(s)	676
BstSCI	CCNGG	3 cut(s)	51, 60, 486
BstSLI	GKGCMC	2 cut(s)	487, 956
BstV1I	GCAGC	2 cut(s)	405, 907
BstXI	CCANNNNNNTGG	2 cut(s)	125, 373
Bsu15I	ATCGAT	1 cut(s)	618
BsuI	GTATCC	2 cut(s)	652, 988
BsuRI	GGCC	3 cut(s)	116, 577, 756
BsuTUI	ATCGAT	1 cut(s)	618
BtgZI	GCGATG	2 cut(s)	754, 864
BtsCI	GGATG	1 cut(s)	593
BtsIMutI	CAGTG	1 cut(s)	487
Cac8I	GCNNGC	3 cut(s)	285, 302, 784
CfoI	GCGC	2 cut(s)	668, 829
Cfr10I	RCCGGY	1 cut(s)	662
Cfr13I	GGNCC	3 cut(s)	115, 202, 341
ClaI	ATCGAT	1 cut(s)	618
Csp6I	GTAC	3 cut(s)	93, 382, 907
CspCI	CAANNNNNGTGG	4 cut(s)	586, 621, 1032, 1067
CviAII	CATG	6 cut(s)	119, 199, 506, 669, 846, 1049
CviQI	GTAC	3 cut(s)	93, 382, 907
DdeI	CTNAG	5 cut(s)	321, 720, 735, 795, 945
DpnI	GATC	2 cut(s)	464, 891
DpnII	GATC	2 cut(s)	462, 889
Eam1104I	CTCTTC	1 cut(s)	550
EarI	CTCTTC	1 cut(s)	550
Eco130I	CCWWGG	1 cut(s)	604
Eco24I	GRGCYC	1 cut(s)	366
Eco47I	GGWCC	2 cut(s)	202, 341
Eco88I	CYCGRG	1 cut(s)	569
Eco91I	GGTNACC	1 cut(s)	676
EcoNI	CCTNNNNNAGG	1 cut(s)	761
EcoO65I	GGTNACC	1 cut(s)	676
EcoT14I	CCWWGG	1 cut(s)	604
EcoT38I	GRGCYC	1 cut(s)	366
ErhI	CCWWGG	1 cut(s)	604
FaeI	CATG	6 cut(s)	122, 202, 509, 672, 849, 1052
FaqI	GGGAC	2 cut(s)	760, 813
FatI	CATG	6 cut(s)	118, 198, 505, 668, 845, 1048
FbaI	TGATCA	1 cut(s)	889
Fnu4HI	GCNGC	2 cut(s)	394, 921
FokI	GGATG	1 cut(s)	580
FriOI	GRGCYC	1 cut(s)	366
Fsp4HI	GCNGC	2 cut(s)	394, 921
FspBI	CTAG	2 cut(s)	524, 912
GlaI	GCGC	2 cut(s)	667, 828
GluI	GCNGC	2 cut(s)	394, 921
GsaI	CCCAGC	1 cut(s)	291
HaeIII	GGCC	3 cut(s)	116, 577, 756
HapII	CCGG	4 cut(s)	52, 62, 488, 663
HhaI	GCGC	2 cut(s)	668, 829
Hin1II	CATG	6 cut(s)	122, 202, 509, 672, 849, 1052
Hin6I	GCGC	2 cut(s)	666, 827
HinP1I	GCGC	2 cut(s)	666, 827
HindIII	AAGCTT	2 cut(s)	238, 632
HinfI	GANTC	4 cut(s)	20, 310, 439, 615
HpaII	CCGG	4 cut(s)	52, 62, 488, 663
HphI	GGTGA	2 cut(s)	367, 688
Hpy166II	GTNNAC	2 cut(s)	909, 954
Hpy188I	TCNGA	3 cut(s)	19, 450, 961
Hpy188III	TCNNGA	6 cut(s)	307, 469, 533, 571, 1002, 1063
Hpy8I	GTNNAC	2 cut(s)	909, 954
HpyAV	CCTTC	5 cut(s)	211, 215, 691, 798, 875
HpyCH4III	ACNGT	4 cut(s)	482, 770, 941, 965
HpyCH4V	TGCA	3 cut(s)	317, 854, 954
HpyF10VI	GCNNNNNNNGC	2 cut(s)	607, 835
HpyF3I	CTNAG	5 cut(s)	321, 720, 735, 795, 945
Hsp92II	CATG	6 cut(s)	122, 202, 509, 672, 849, 1052
HspAI	GCGC	2 cut(s)	666, 827
Ksp22I	TGATCA	1 cut(s)	889
Kzo9I	GATC	2 cut(s)	462, 889
LmnI	GCTCC	3 cut(s)	361, 606, 917
LpnPI	CCDG	9 cut(s)	65, 75, 273, 501, 676, 747, 796, 977, 987
Lsp1109I	GCAGC	2 cut(s)	405, 907
LweI	GCATC	3 cut(s)	23, 326, 841
MaeI	CTAG	2 cut(s)	524, 912
MaeIII	GTNAC	4 cut(s)	21, 469, 676, 1055
MalI	GATC	2 cut(s)	464, 891
MboI	GATC	2 cut(s)	462, 889
MboII	GAAGA	2 cut(s)	537, 783
MfeI	CAATTG	1 cut(s)	728
MhlI	GDGCHC	3 cut(s)	366, 487, 956
MluCI	AATT	3 cut(s)	728, 885, 1039
MlyI	GAGTC	2 cut(s)	29, 319
MnlI	CCTC	8 cut(s)	3, 116, 476, 493, 559, 567, 667, 757
MslI	CAYNNNNRTG	2 cut(s)	123, 510
MspI	CCGG	4 cut(s)	52, 62, 488, 663
MspR9I	CCNGG	3 cut(s)	53, 62, 488
MunI	CAATTG	1 cut(s)	728
MwoI	GCNNNNNNNGC	2 cut(s)	607, 835
NciI	CCSGG	3 cut(s)	53, 62, 488
NdeII	GATC	2 cut(s)	462, 889
NlaIII	CATG	6 cut(s)	122, 202, 509, 672, 849, 1052
NlaIV	GGNNCC	1 cut(s)	363
NmuCI	GTSAC	3 cut(s)	21, 469, 676
PcsI	WCGNNNNNNNCGW	1 cut(s)	105
PfeI	GAWTC	2 cut(s)	439, 615
PkrI	GCNGC	2 cut(s)	395, 922
PleI	GAGTC	2 cut(s)	28, 318
PpsI	GAGTC	2 cut(s)	28, 318
PsiI	TTATAA	1 cut(s)	645
PspEI	GGTNACC	1 cut(s)	676
PspFI	CCCAGC	1 cut(s)	287
PspN4I	GGNNCC	1 cut(s)	363
PspPI	GGNCC	3 cut(s)	115, 202, 341
RsaI	GTAC	3 cut(s)	94, 383, 908
RsaNI	GTAC	3 cut(s)	93, 382, 907
RseI	CAYNNNNRTG	2 cut(s)	123, 510
SatI	GCNGC	2 cut(s)	394, 921
Sau3AI	GATC	2 cut(s)	462, 889
Sau96I	GGNCC	3 cut(s)	115, 202, 341
SchI	GAGTC	2 cut(s)	29, 319
ScrFI	CCNGG	3 cut(s)	53, 62, 488
SduI	GDGCHC	3 cut(s)	366, 487, 956
SfaNI	GCATC	3 cut(s)	23, 326, 841
SinI	GGWCC	2 cut(s)	202, 341
SmiMI	CAYNNNNRTG	2 cut(s)	123, 510
SmlI	CTYRAG	2 cut(s)	550, 830
SmoI	CTYRAG	2 cut(s)	550, 830
SpeI	ACTAGT	1 cut(s)	911
Sse9I	AATT	3 cut(s)	728, 885, 1039
SsiI	CCGC	3 cut(s)	153, 410, 865
SspMI	CTAG	2 cut(s)	524, 912
StyD4I	CCNGG	3 cut(s)	51, 60, 486
StyI	CCWWGG	1 cut(s)	604
TaaI	ACNGT	4 cut(s)	482, 770, 941, 965
TaqI	TCGA	5 cut(s)	31, 215, 618, 707, 899
TasI	AATT	3 cut(s)	728, 885, 1039
TatI	WGTACW	2 cut(s)	381, 906
TfiI	GAWTC	2 cut(s)	439, 615
TscAI	CASTG	1 cut(s)	487
TseFI	GTSAC	3 cut(s)	21, 469, 676
TseI	GCWGC	2 cut(s)	393, 920
Tsp45I	GTSAC	3 cut(s)	21, 469, 676
TspDTI	ATGAA	2 cut(s)	467, 834
TspGWI	ACGGA	2 cut(s)	114, 451
TspRI	CASTG	1 cut(s)	487
VneI	GTGCAC	1 cut(s)	952
VpaK11BI	GGWCC	2 cut(s)	202, 341
XagI	CCTNNNNNAGG	1 cut(s)	761
XcmI	CCANNNNNNNNNTGG	1 cut(s)	130
XspI	CTAG	2 cut(s)	524, 912

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.