Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0001062

Physical Location & Seq

Genomic Coordinates Forward (+)

25432953 .. 25434223

Gene Structure 1271 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG215700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGCCTTCATTGGTCTGTTTATTCCTCTTCTCACTCTTTGTTTGCATTGCTCAAGCTCAAGTTCCTTCAAATCAAACCTTCAAGTTCATTAATGAAGGAGAATTCGGCCCTTACATTGTCGAATACGATGGAGACTATCGTATGCTTGATCTCTTTGCCTCACCTCATCAACTTGCCTTCTACAACACCACCCCAAATGCCTTCACCCTCGCTCTACGCATGGGCTTGCGCCGTTCGGAGTCGCTTTTCCGATGGGTTTGGGAGGCCAACCGAGGAAACCCGGTTGGCGAAAATGCCACACTCACTTTTGGGCAGGACGGAAACCTCGTCTTGGCCGATGCTGATGGCCGAGTGGCTTGGCAAACGAACACCGCGAACAAAGGTGTTGTAGGCCTCAGGTTGCTTTTAACCGGAAACATGGTCCTTCACAACTCGAAGGGTGATTTTGTTTGGGAAAGCTTCGACTACCCAACAGACACTTTGTTGGTGGGTCAATCCCTGAAGGCCGGAAAAGTGAGCAAGCTCGTGAGCCGGGCCTCGGACACAGAAAACAAAGATGGGGCATACAGCTTGGTGATGGAGCCGAAAGGATTGGTTTTGTACTACCAGAGCAAGAACACACCGAAGCCGTTACTCTACTACAGATTCACCGAAAGGAACTTCAATGTAAAGCGTCCGATAGATCAAGTGATATTGCAGTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005829 GO:0006810 GO:0006833 GO:0008150 GO:0009505 GO:0012505 GO:0016020 GO:0030312 GO:0031090 GO:0042044 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0051179 GO:0051234 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin PAN_2 S_locus_glycop

Protein Analysis

234

Amino Acids

26.37

Weight (kDa)

7.66

Isoelectric Point (pI)

35.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B_lectin	PF01453	86 - 174	8.8e-20	D-mannose binding lectin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001062)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78850 AT1G78860
fragaria_vesca	FvH4_3g18371 FvH4_3g18380 FvH4_3g18383 FvH4_3g18410
malus_domestica	MD03G1242400.v1.1 MD11G1262100.v1.1 MD11G1262300.v1.1 MD11G1262400.v1.1 MD11G1262600.v1.1
prunus_persica	Prupe.4G165600_v2.0.a1 Prupe.4G166000_v2.0.a1 Prupe.4G166100_v2.0.a1 Prupe.4G166200_v2.0.a1
pyrus_communis	pycom11g23110 pycom11g23150
rosa_chinensis	RchiOBHm_Chr5g0031021 RchiOBHm_Chr5g0031031 RchiOBHm_Chr5g0031081 RchiOBHm_Chr5g0031091 RchiOBHm_Chr5g0031131 RchiOBHm_Chr5g0031141
rosa_laevigata	RLG00000033282 RLG00000033283 RLG00000033284 RLG00000033285
rosa_multiflora	Rmu_co8472871.1_g000001 Rmu_co8500049.1_g000001 Rmu_sc0001523.1_g000001 Rmu_sc0005489.1_g000008 Rmu_sc0020175.1_g000004 Rmu_sc0023422.1_g000001 Rmu_sc0023423.1_g000001
rosa_roxburghii	Rroxscaffold_1G00049150 Rroxscaffold_1G00049170 Rroxscaffold_1G00049190 Rroxscaffold_1G00049200 Rroxscaffold_1G00049210 Rroxscaffold_1G00049240
rosa_rugosa	Rorug05G0122300 Rorug05G0122400 Rorug05G0122500
rosa_samantha	Rh5AG215600 Rh5AG215700 Rh5AG216000 Rh5BG214800 Rh5BG214900 Rh5BG215000 Rh5BG215500 Rh5CG238900 Rh5DG219300 Rh5DG219400 Rh5DG219600 Rh5DG219900 Rh5DG220100
rosa_wichuraiana	Rw5G019730 Rw5G019740 Rw5G019750 Rw5G019760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	374
AciI	CCGC	1 cut(s)	372
AcoI	YGGCCR	2 cut(s)	333, 346
AcsI	RAATTY	1 cut(s)	101
AcuI	CTGAAG	1 cut(s)	521
AfaI	GTAC	1 cut(s)	602
AfiI	CCNNNNNNNGG	2 cut(s)	331, 538
AgsI	TTSAA	3 cut(s)	69, 82, 664
AluBI	AGCT	4 cut(s)	56, 459, 523, 570
AluI	AGCT	4 cut(s)	56, 459, 523, 570
Alw26I	GTCTC	1 cut(s)	126
AoxI	GGCC	7 cut(s)	106, 264, 333, 346, 391, 504, 534
ApoI	RAATTY	1 cut(s)	101
AseI	ATTAAT	1 cut(s)	90
AspLEI	GCGC	1 cut(s)	231
AspS9I	GGNCC	3 cut(s)	107, 421, 534
AsuC2I	CCSGG	2 cut(s)	281, 533
AsuHPI	GGTGA	5 cut(s)	153, 196, 452, 586, 640
AvaII	GGWCC	1 cut(s)	421
AxyI	CCTNAGG	1 cut(s)	395
BauI	CACGAG	1 cut(s)	524
BccI	CCATC	5 cut(s)	122, 246, 338, 551, 571
BceAI	ACGGC	2 cut(s)	216, 613
BcnI	CCSGG	2 cut(s)	281, 533
BcoDI	GTCTC	1 cut(s)	126
BfaI	CTAG	1 cut(s)	703
BfmI	CTRYAG	1 cut(s)	640
Bme1390I	CCNGG	2 cut(s)	281, 533
Bme18I	GGWCC	1 cut(s)	421
BmgT120I	GGNCC	3 cut(s)	107, 421, 534
BmiI	GGNNCC	1 cut(s)	582
BmrFI	CCNGG	2 cut(s)	281, 533
BmsI	GCATC	1 cut(s)	328
BpuEI	CTTGAG	2 cut(s)	36, 42
BpuMI	CCSGG	2 cut(s)	281, 533
BsaJI	CCNNGG	2 cut(s)	271, 537
BsaWI	WCCGGW	1 cut(s)	410
Bsc4I	CCNNNNNNNGG	2 cut(s)	331, 538
Bse21I	CCTNAGG	1 cut(s)	395
Bse3DI	GCAATG	1 cut(s)	45
BseDI	CCNNGG	2 cut(s)	271, 537
BseLI	CCNNNNNNNGG	2 cut(s)	331, 538
BseMI	GCAATG	1 cut(s)	45
BseMII	CTCAG	1 cut(s)	409
Bsh1236I	CGCG	1 cut(s)	374
BshFI	GGCC	7 cut(s)	108, 266, 335, 348, 393, 506, 536
BsiSI	CCGG	4 cut(s)	281, 411, 507, 532
BslI	CCNNNNNNNGG	2 cut(s)	331, 538
BsmAI	GTCTC	1 cut(s)	126
BsnI	GGCC	7 cut(s)	108, 266, 335, 348, 393, 506, 536
Bsp143I	GATC	2 cut(s)	148, 682
BspACI	CCGC	1 cut(s)	372
BspANI	GGCC	7 cut(s)	108, 266, 335, 348, 393, 506, 536
BspCNI	CTCAG	1 cut(s)	408
BspFNI	CGCG	1 cut(s)	374
BspLI	GGNNCC	1 cut(s)	582
BsrDI	GCAATG	1 cut(s)	45
BssECI	CCNNGG	2 cut(s)	271, 537
BssMI	GATC	2 cut(s)	148, 682
BssSI	CACGAG	1 cut(s)	524
Bst2BI	CACGAG	1 cut(s)	524
Bst6I	CTCTTC	1 cut(s)	32
BstC8I	GCNNGC	2 cut(s)	227, 521
BstDEI	CTNAG	1 cut(s)	395
BstFNI	CGCG	1 cut(s)	374
BstHHI	GCGC	1 cut(s)	231
BstKTI	GATC	2 cut(s)	151, 685
BstMAI	GTCTC	1 cut(s)	126
BstMBI	GATC	2 cut(s)	148, 682
BstSCI	CCNGG	2 cut(s)	279, 531
BstSFI	CTRYAG	1 cut(s)	640
BstUI	CGCG	1 cut(s)	374
Bsu36I	CCTNAGG	1 cut(s)	395
BsuRI	GGCC	7 cut(s)	108, 266, 335, 348, 393, 506, 536
BtsI	GCAGTG	1 cut(s)	704
BtsIMutI	CAGTG	1 cut(s)	704
Cac8I	GCNNGC	2 cut(s)	227, 521
CfoI	GCGC	1 cut(s)	231
Cfr13I	GGNCC	3 cut(s)	107, 421, 534
CseI	GACGC	1 cut(s)	662
Csp6I	GTAC	1 cut(s)	601
CviAII	CATG	2 cut(s)	220, 418
CviQI	GTAC	1 cut(s)	601
DdeI	CTNAG	1 cut(s)	395
DpnI	GATC	2 cut(s)	150, 684
DpnII	GATC	2 cut(s)	148, 682
EaeI	YGGCCR	2 cut(s)	333, 346
Eam1104I	CTCTTC	1 cut(s)	32
EarI	CTCTTC	1 cut(s)	32
Eco147I	AGGCCT	1 cut(s)	393
Eco47I	GGWCC	1 cut(s)	421
Eco57I	CTGAAG	1 cut(s)	521
Eco81I	CCTNAGG	1 cut(s)	395
EcoRI	GAATTC	1 cut(s)	101
FaeI	CATG	2 cut(s)	223, 421
FaiI	YATR	4 cut(s)	143, 221, 419, 565
FatI	CATG	2 cut(s)	219, 417
FspBI	CTAG	1 cut(s)	703
GlaI	GCGC	1 cut(s)	230
HaeIII	GGCC	7 cut(s)	108, 266, 335, 348, 393, 506, 536
HapII	CCGG	4 cut(s)	281, 411, 507, 532
HgaI	GACGC	1 cut(s)	662
HhaI	GCGC	1 cut(s)	231
Hin1II	CATG	2 cut(s)	223, 421
Hin6I	GCGC	1 cut(s)	229
HinP1I	GCGC	1 cut(s)	229
HindIII	AAGCTT	1 cut(s)	457
HinfI	GANTC	2 cut(s)	239, 645
HpaII	CCGG	4 cut(s)	281, 411, 507, 532
HphI	GGTGA	5 cut(s)	153, 196, 452, 586, 640
Hpy188I	TCNGA	4 cut(s)	238, 251, 541, 678
Hpy188III	TCNNGA	1 cut(s)	526
HpyAV	CCTTC	9 cut(s)	15, 75, 88, 89, 187, 211, 430, 434, 496
HpyCH4V	TGCA	2 cut(s)	45, 697
HpyF3I	CTNAG	1 cut(s)	395
Hsp92II	CATG	2 cut(s)	223, 421
HspAI	GCGC	1 cut(s)	229
Kzo9I	GATC	2 cut(s)	148, 682
LmnI	GCTCC	1 cut(s)	580
LpnPI	CCDG	8 cut(s)	294, 299, 382, 424, 512, 520, 545, 620
LweI	GCATC	1 cut(s)	328
MaeI	CTAG	1 cut(s)	703
MaeIII	GTNAC	1 cut(s)	630
MalI	GATC	2 cut(s)	150, 684
MboI	GATC	2 cut(s)	148, 682
MboII	GAAGA	1 cut(s)	19
MluCI	AATT	1 cut(s)	101
MlyI	GAGTC	1 cut(s)	248
MnlI	CCTC	9 cut(s)	35, 169, 174, 218, 256, 266, 335, 404, 547
MseI	TTAA	2 cut(s)	90, 407
MspI	CCGG	4 cut(s)	281, 411, 507, 532
MspR9I	CCNGG	2 cut(s)	281, 533
MvnI	CGCG	1 cut(s)	374
NciI	CCSGG	2 cut(s)	281, 533
NdeII	GATC	2 cut(s)	148, 682
NlaIII	CATG	2 cut(s)	223, 421
NlaIV	GGNNCC	1 cut(s)	582
NmeAIII	GCCGAG	1 cut(s)	374
PceI	AGGCCT	1 cut(s)	393
PcsI	WCGNNNNNNNCGW	3 cut(s)	324, 333, 371
PfeI	GAWTC	1 cut(s)	645
PleI	GAGTC	1 cut(s)	247
PpsI	GAGTC	1 cut(s)	247
PshBI	ATTAAT	1 cut(s)	90
PspN4I	GGNNCC	1 cut(s)	582
PspPI	GGNCC	3 cut(s)	107, 421, 534
RsaI	GTAC	1 cut(s)	602
RsaNI	GTAC	1 cut(s)	601
SaqAI	TTAA	2 cut(s)	90, 407
Sau3AI	GATC	2 cut(s)	148, 682
Sau96I	GGNCC	3 cut(s)	107, 421, 534
SchI	GAGTC	1 cut(s)	248
ScrFI	CCNGG	2 cut(s)	281, 533
SetI	ASST	9 cut(s)	58, 80, 166, 327, 385, 401, 461, 525, 572
SfaNI	GCATC	1 cut(s)	328
SfcI	CTRYAG	1 cut(s)	640
SinI	GGWCC	1 cut(s)	421
SmlI	CTYRAG	2 cut(s)	51, 57
SmoI	CTYRAG	2 cut(s)	51, 57
Sse9I	AATT	1 cut(s)	101
SseBI	AGGCCT	1 cut(s)	393
SsiI	CCGC	1 cut(s)	372
SspMI	CTAG	1 cut(s)	703
StuI	AGGCCT	1 cut(s)	393
StyD4I	CCNGG	2 cut(s)	279, 531
TaqI	TCGA	3 cut(s)	120, 434, 462
TasI	AATT	1 cut(s)	101
TatI	WGTACW	1 cut(s)	600
TfiI	GAWTC	1 cut(s)	645
Tru1I	TTAA	2 cut(s)	90, 407
Tru9I	TTAA	2 cut(s)	90, 407
TscAI	CASTG	1 cut(s)	704
TspDTI	ATGAA	2 cut(s)	76, 108
TspGWI	ACGGA	1 cut(s)	333
TspRI	CASTG	1 cut(s)	704
VpaK11BI	GGWCC	1 cut(s)	421
VspI	ATTAAT	1 cut(s)	90
XapI	RAATTY	1 cut(s)	101
XspI	CTAG	1 cut(s)	703

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.