Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0001062

Physical Location & Seq

Genomic Coordinates Reverse (-)

37717831 .. 37719165

Gene Structure 1335 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1262300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1335 bp

ATGCTTTCACCCACATTTACCATGTCATCATTGCTTTCGCTATTCCTTTTCTCTCTATTTGCTTTCAATGCCCAAGCTCAAGTTCCCGCTAATCAAACATTCAAGTTTGTCAACGAAGGAGAATTTGGGCCTTACATTGTAGAATATGATGGAAACTACCGTATGCTTAATGTGTATAGCTCCCCCTTCCAACTTGCCTTCTACAACACTAGCCCAAATGCCTTTACACTAGCTCTTCGCATGGGTACGACTCGCTCAGAGTCACTCAGACGTTGGGTTTGGGAGGCCAATCGAGGAAACCCAGTTGGAGAAAATGCCACCCTCGCGTTTGGAACAGATGGCAATCTTGTACTAGCGGATGCCGATGGCCGAGTGGCTTGGCAAACCAACACTGCCAATAAAGGTGTGGTAGGCTTCAAGTTGCTTCCAACAGGCAACATGGTGCTCCATGACTCGAAGAGCAACTTTGTCTGGCAAAGCTTTGACCACCCTACTGACACCTTGTTGGTGGGTCAATCTCTAAGGGCCAGAGCAGTGAACAAACTGGTGAGTCGAGCCTCCGAGACAGAAAACAAAGATGGACCTTACAGCATAGTGATGGAATCCAAGTCAATATCTTTGTATTACAAGAGCAACAACTCCCCAAAGCCGTTACTCTACACTCAGTTTTCAATTACAGATGTTACACCGGCCAAAAGCGTATTTGACCGTGTCACATTTAATTGTGCTCCAGAGACAGATGAGGGCCATGCTTATGACCTAACCCTACAATTTGAAGTGGTCAACCCTACCTTAGCGGGAGGCCACATTCTAGCGAGGCCCAAATACAATAGCATGTTGACATTCCTTAGGCTTGAAATAGATGGAAATGTCAAGCTTTACACTTACGATGACAATGTGGATTGGGGTGCGTGGGAGGTGACCTTCACTCTTTTCGATAGAGATAATTGGTTATGGGAAACTAATGAGTGCCAATTGCCCGAGCGATGTGGTACTTTTGGCCTTTGTGAGGACAGCCAATGTGTTGCTTGCCCATCCTCTAAGGGATTATTGGGTTGGAGCAAGACTTGTAAGCCTGAGAAGCTAACTTCTTGTGATGCCAAGAGCTTCCACTACTACAAAGTTGGAGGGGTTGATCACTTCTTGAGCAAGTACACCAAGGGAGAAGCTACAAAGGAGGCTAATTGTGCTAAGAAGTGTACTTCGAATTGCAAGTGTTTGGGTTACTTTTACAACAAAAATACATCAAGGTGTTGGATAGCTTACGATTTGAAAACATTGACCAAGGTTGCCAATTCCACCCACGTGGCTTACATCAAGGCACCTAATCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005829 GO:0006810 GO:0006833 GO:0008150 GO:0009505 GO:0012505 GO:0016020 GO:0030312 GO:0031090 GO:0042044 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0051179 GO:0051234 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin PAN_2 S_locus_glycop

Protein Analysis

445

Amino Acids

49.81

Weight (kDa)

7.48

Isoelectric Point (pI)

38.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B_lectin	PF01453	93 - 181	3.5e-20	D-mannose binding lectin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001062)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78850 AT1G78860
fragaria_vesca	FvH4_3g18371 FvH4_3g18380 FvH4_3g18383 FvH4_3g18410
malus_domestica	MD03G1242400.v1.1 MD11G1262100.v1.1 MD11G1262300.v1.1 MD11G1262400.v1.1 MD11G1262600.v1.1
prunus_persica	Prupe.4G165600_v2.0.a1 Prupe.4G166000_v2.0.a1 Prupe.4G166100_v2.0.a1 Prupe.4G166200_v2.0.a1
pyrus_communis	pycom11g23110 pycom11g23150
rosa_chinensis	RchiOBHm_Chr5g0031021 RchiOBHm_Chr5g0031031 RchiOBHm_Chr5g0031081 RchiOBHm_Chr5g0031091 RchiOBHm_Chr5g0031131 RchiOBHm_Chr5g0031141
rosa_laevigata	RLG00000033282 RLG00000033283 RLG00000033284 RLG00000033285
rosa_multiflora	Rmu_co8472871.1_g000001 Rmu_co8500049.1_g000001 Rmu_sc0001523.1_g000001 Rmu_sc0005489.1_g000008 Rmu_sc0020175.1_g000004 Rmu_sc0023422.1_g000001 Rmu_sc0023423.1_g000001
rosa_roxburghii	Rroxscaffold_1G00049150 Rroxscaffold_1G00049170 Rroxscaffold_1G00049190 Rroxscaffold_1G00049200 Rroxscaffold_1G00049210 Rroxscaffold_1G00049240
rosa_rugosa	Rorug05G0122300 Rorug05G0122400 Rorug05G0122500
rosa_samantha	Rh5AG215600 Rh5AG215700 Rh5AG216000 Rh5BG214800 Rh5BG214900 Rh5BG215000 Rh5BG215500 Rh5CG238900 Rh5DG219300 Rh5DG219400 Rh5DG219600 Rh5DG219900 Rh5DG220100
rosa_wichuraiana	Rw5G019730 Rw5G019740 Rw5G019750 Rw5G019760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1321
AccII	CGCG	1 cut(s)	326
AciI	CCGC	3 cut(s)	87, 356, 797
AcoI	YGGCCR	2 cut(s)	367, 690
AcsI	RAATTY	1 cut(s)	122
AcvI	CACGTG	1 cut(s)	1306
AfaI	GTAC	5 cut(s)	247, 351, 994, 1154, 1201
AfiI	CCNNNNNNNGG	1 cut(s)	1009
AgsI	TTSAA	7 cut(s)	67, 103, 418, 672, 776, 857, 1273
AjuI	GAANNNNNNNTTGG	4 cut(s)	66, 98, 108, 140
AleI	CACNNNNGTG	1 cut(s)	1304
AluBI	AGCT	9 cut(s)	77, 180, 233, 480, 877, 1084, 1107, 1169, 1262
AluI	AGCT	9 cut(s)	77, 180, 233, 480, 877, 1084, 1107, 1169, 1262
Alw21I	GWGCWC	2 cut(s)	447, 730
Alw26I	GTCTC	2 cut(s)	557, 728
Ama87I	CYCGRG	1 cut(s)	980
AoxI	GGCC	9 cut(s)	128, 285, 367, 525, 690, 745, 802, 818, 1000
ApoI	RAATTY	1 cut(s)	122
ArsI	GACNNNNNNTTYG	2 cut(s)	261, 293
AspS9I	GGNCC	5 cut(s)	128, 525, 581, 745, 819
AsuHPI	GGTGA	2 cut(s)	559, 931
AsuII	TTCGAA	1 cut(s)	1205
AvaI	CYCGRG	1 cut(s)	980
AvaII	GGWCC	1 cut(s)	581
AxyI	CCTNAGG	1 cut(s)	848
BanI	GGYRCC	1 cut(s)	1321
BbrPI	CACGTG	1 cut(s)	1306
Bbv12I	GWGCWC	2 cut(s)	447, 730
BccI	CCATC	7 cut(s)	143, 332, 359, 572, 592, 857, 1042
BceAI	ACGGC	1 cut(s)	634
BclI	TGATCA	1 cut(s)	1135
BcoDI	GTCTC	2 cut(s)	557, 728
BfaI	CTAG	4 cut(s)	210, 230, 353, 812
Bme18I	GGWCC	1 cut(s)	581
BmeT110I	CYCGRG	1 cut(s)	980
BmgT120I	GGNCC	5 cut(s)	128, 525, 581, 745, 819
BmiI	GGNNCC	1 cut(s)	1323
BmrI	ACTGGG	1 cut(s)	296
BmsI	GCATC	2 cut(s)	349, 1087
BmuI	ACTGGG	1 cut(s)	296
BpmI	CTGGAG	1 cut(s)	714
Bpu10I	CCTNAGC	1 cut(s)	793
Bpu14I	TTCGAA	1 cut(s)	1205
BpuEI	CTTGAG	2 cut(s)	63, 1165
BsaAI	YACGTR	1 cut(s)	1306
BsaBI	GATNNNNATC	1 cut(s)	342
BsaJI	CCNNGG	2 cut(s)	1158, 1284
Bsc4I	CCNNNNNNNGG	1 cut(s)	1009
Bse118I	RCCGGY	1 cut(s)	688
Bse1I	ACTGG	2 cut(s)	302, 549
Bse21I	CCTNAGG	1 cut(s)	848
Bse3DI	GCAATG	1 cut(s)	29
Bse8I	GATNNNNATC	1 cut(s)	342
BseDI	CCNNGG	2 cut(s)	1158, 1284
BseGI	GGATG	2 cut(s)	364, 1034
BseJI	GATNNNNATC	1 cut(s)	342
BseLI	CCNNNNNNNGG	1 cut(s)	1009
BseMI	GCAATG	1 cut(s)	29
BseMII	CTCAG	4 cut(s)	270, 280, 677, 1068
BseNI	ACTGG	2 cut(s)	302, 549
Bsh1236I	CGCG	1 cut(s)	326
BshFI	GGCC	9 cut(s)	130, 287, 369, 527, 692, 747, 804, 820, 1002
BshNI	GGYRCC	1 cut(s)	1321
BsiHKAI	GWGCWC	2 cut(s)	447, 730
BsiHKCI	CYCGRG	1 cut(s)	980
BsiSI	CCGG	1 cut(s)	689
BslI	CCNNNNNNNGG	1 cut(s)	1009
BsmAI	GTCTC	2 cut(s)	557, 728
BsnI	GGCC	9 cut(s)	130, 287, 369, 527, 692, 747, 804, 820, 1002
BsoBI	CYCGRG	1 cut(s)	980
Bsp119I	TTCGAA	1 cut(s)	1205
Bsp1286I	GDGCHC	2 cut(s)	447, 730
Bsp143I	GATC	1 cut(s)	1135
BspACI	CCGC	3 cut(s)	87, 356, 797
BspANI	GGCC	9 cut(s)	130, 287, 369, 527, 692, 747, 804, 820, 1002
BspCNI	CTCAG	4 cut(s)	269, 279, 676, 1069
BspFNI	CGCG	1 cut(s)	326
BspLI	GGNNCC	1 cut(s)	1323
BspQI	GCTCTTC	2 cut(s)	240, 452
BspT104I	TTCGAA	1 cut(s)	1205
BspT107I	GGYRCC	1 cut(s)	1321
BsrDI	GCAATG	1 cut(s)	29
BsrFI	RCCGGY	1 cut(s)	688
BsrI	ACTGG	2 cut(s)	302, 549
BssAI	RCCGGY	1 cut(s)	688
BssECI	CCNNGG	2 cut(s)	1158, 1284
BssMI	GATC	1 cut(s)	1135
BssT1I	CCWWGG	2 cut(s)	1158, 1284
Bst4CI	ACNGT	2 cut(s)	161, 710
Bst6I	CTCTTC	2 cut(s)	240, 452
BstBAI	YACGTR	1 cut(s)	1306
BstBI	TTCGAA	1 cut(s)	1205
BstC8I	GCNNGC	1 cut(s)	1030
BstDEI	CTNAG	9 cut(s)	256, 266, 521, 663, 793, 848, 1041, 1077, 1191
BstEII	GGTNACC	1 cut(s)	919
BstENI	CCTNNNNNAGG	1 cut(s)	1007
BstF5I	GGATG	2 cut(s)	364, 1034
BstFNI	CGCG	1 cut(s)	326
BstKTI	GATC	1 cut(s)	1138
BstMAI	GTCTC	2 cut(s)	557, 728
BstMBI	GATC	1 cut(s)	1135
BstMWI	GCNNNNNNNGC	4 cut(s)	68, 323, 1081, 1187
BstNSI	RCATGY	1 cut(s)	838
BstPI	GGTNACC	1 cut(s)	919
BstUI	CGCG	1 cut(s)	326
BstXI	CCANNNNNNTGG	1 cut(s)	1306
Bsu36I	CCTNAGG	1 cut(s)	848
BsuRI	GGCC	9 cut(s)	130, 287, 369, 527, 692, 747, 804, 820, 1002
BtgZI	GCGATG	1 cut(s)	1000
BtsCI	GGATG	2 cut(s)	364, 1034
BtsI	GCAGTG	2 cut(s)	390, 540
BtsIMutI	CAGTG	2 cut(s)	390, 540
Cac8I	GCNNGC	1 cut(s)	1030
Cfr10I	RCCGGY	1 cut(s)	688
Cfr13I	GGNCC	5 cut(s)	128, 525, 581, 745, 819
Csp6I	GTAC	5 cut(s)	246, 350, 993, 1153, 1200
CviAII	CATG	6 cut(s)	22, 241, 439, 449, 749, 835
CviQI	GTAC	5 cut(s)	246, 350, 993, 1153, 1200
DdeI	CTNAG	9 cut(s)	256, 266, 521, 663, 793, 848, 1041, 1077, 1191
DpnI	GATC	1 cut(s)	1137
DpnII	GATC	1 cut(s)	1135
EaeI	YGGCCR	2 cut(s)	367, 690
Eam1104I	CTCTTC	2 cut(s)	240, 452
EarI	CTCTTC	2 cut(s)	240, 452
Eco130I	CCWWGG	2 cut(s)	1158, 1284
Eco47I	GGWCC	1 cut(s)	581
Eco72I	CACGTG	1 cut(s)	1306
Eco81I	CCTNAGG	1 cut(s)	848
Eco88I	CYCGRG	1 cut(s)	980
Eco91I	GGTNACC	1 cut(s)	919
EcoNI	CCTNNNNNAGG	1 cut(s)	1007
EcoO65I	GGTNACC	1 cut(s)	919
EcoT14I	CCWWGG	2 cut(s)	1158, 1284
ErhI	CCWWGG	2 cut(s)	1158, 1284
FaeI	CATG	6 cut(s)	25, 244, 442, 452, 752, 838
FalI	AAGNNNNNCTT	2 cut(s)	449, 481
FatI	CATG	6 cut(s)	21, 240, 438, 448, 748, 834
FauI	CCCGC	2 cut(s)	94, 790
FbaI	TGATCA	1 cut(s)	1135
FokI	GGATG	2 cut(s)	371, 1021
FspBI	CTAG	4 cut(s)	210, 230, 353, 812
GsuI	CTGGAG	1 cut(s)	714
HaeIII	GGCC	9 cut(s)	130, 287, 369, 527, 692, 747, 804, 820, 1002
HapII	CCGG	1 cut(s)	689
Hin1II	CATG	6 cut(s)	25, 244, 442, 452, 752, 838
HincII	GTYRAC	3 cut(s)	112, 784, 840
HindII	GTYRAC	3 cut(s)	112, 784, 840
HindIII	AAGCTT	2 cut(s)	478, 875
HinfI	GANTC	5 cut(s)	250, 260, 452, 550, 602
HpaII	CCGG	1 cut(s)	689
HphI	GGTGA	2 cut(s)	559, 931
Hpy166II	GTNNAC	6 cut(s)	112, 538, 784, 840, 1155, 1200
Hpy188I	TCNGA	3 cut(s)	259, 269, 562
Hpy188III	TCNNGA	2 cut(s)	731, 1144
Hpy8I	GTNNAC	6 cut(s)	112, 538, 784, 840, 1155, 1200
HpyAV	CCTTC	4 cut(s)	110, 196, 208, 934
HpyCH4III	ACNGT	2 cut(s)	161, 710
HpyCH4IV	ACGT	2 cut(s)	271, 1305
HpyCH4V	TGCA	1 cut(s)	1212
HpyF10VI	GCNNNNNNNGC	4 cut(s)	68, 323, 1081, 1187
HpyF3I	CTNAG	9 cut(s)	256, 266, 521, 663, 793, 848, 1041, 1077, 1191
HpySE526I	ACGT	2 cut(s)	271, 1305
Hsp92II	CATG	6 cut(s)	25, 244, 442, 452, 752, 838
Ksp22I	TGATCA	1 cut(s)	1135
Kzo9I	GATC	1 cut(s)	1135
LguI	GCTCTTC	2 cut(s)	240, 452
LmnI	GCTCC	4 cut(s)	185, 450, 733, 1059
LpnPI	CCDG	8 cut(s)	315, 417, 457, 530, 541, 702, 744, 1089
LweI	GCATC	2 cut(s)	349, 1087
MaeI	CTAG	4 cut(s)	210, 230, 353, 812
MaeII	ACGT	2 cut(s)	271, 1305
MaeIII	GTNAC	6 cut(s)	261, 651, 682, 712, 919, 1223
MalI	GATC	1 cut(s)	1137
MboI	GATC	1 cut(s)	1135
MboII	GAAGA	2 cut(s)	227, 469
MfeI	CAATTG	1 cut(s)	974
MhlI	GDGCHC	2 cut(s)	447, 730
MluCI	AATT	9 cut(s)	122, 672, 721, 770, 946, 974, 1183, 1207, 1294
MlyI	GAGTC	4 cut(s)	244, 269, 446, 559
MmeI	TCCRAC	6 cut(s)	214, 286, 452, 1037, 1105, 1235
MseI	TTAA	2 cut(s)	168, 720
MslI	CAYNNNNRTG	4 cut(s)	596, 753, 1249, 1304
MspI	CCGG	1 cut(s)	689
MunI	CAATTG	1 cut(s)	974
MvnI	CGCG	1 cut(s)	326
MwoI	GCNNNNNNNGC	4 cut(s)	68, 323, 1081, 1187
NdeII	GATC	1 cut(s)	1135
NlaIII	CATG	6 cut(s)	25, 244, 442, 452, 752, 838
NlaIV	GGNNCC	1 cut(s)	1323
NmeAIII	GCCGAG	1 cut(s)	395
NmuCI	GTSAC	3 cut(s)	261, 712, 919
NspI	RCATGY	1 cut(s)	838
NspV	TTCGAA	1 cut(s)	1205
OliI	CACNNNNGTG	1 cut(s)	1304
PciSI	GCTCTTC	2 cut(s)	240, 452
PfeI	GAWTC	1 cut(s)	602
PflFI	GACNNNGTC	1 cut(s)	710
PleI	GAGTC	4 cut(s)	244, 268, 446, 558
PmaCI	CACGTG	1 cut(s)	1306
PmlI	CACGTG	1 cut(s)	1306
PpsI	GAGTC	4 cut(s)	244, 268, 446, 558
Ppu21I	YACGTR	1 cut(s)	1306
PspCI	CACGTG	1 cut(s)	1306
PspEI	GGTNACC	1 cut(s)	919
PspN4I	GGNNCC	1 cut(s)	1323
PspPI	GGNCC	5 cut(s)	128, 525, 581, 745, 819
PsyI	GACNNNGTC	1 cut(s)	710
RsaI	GTAC	5 cut(s)	247, 351, 994, 1154, 1201
RsaNI	GTAC	5 cut(s)	246, 350, 993, 1153, 1200
RseI	CAYNNNNRTG	4 cut(s)	596, 753, 1249, 1304
SapI	GCTCTTC	2 cut(s)	240, 452
SaqAI	TTAA	2 cut(s)	168, 720
Sau3AI	GATC	1 cut(s)	1135
Sau96I	GGNCC	5 cut(s)	128, 525, 581, 745, 819
SchI	GAGTC	4 cut(s)	244, 269, 446, 559
SduI	GDGCHC	2 cut(s)	447, 730
SfaNI	GCATC	2 cut(s)	349, 1087
SfuI	TTCGAA	1 cut(s)	1205
SinI	GGWCC	1 cut(s)	581
SmiMI	CAYNNNNRTG	4 cut(s)	596, 753, 1249, 1304
SmlI	CTYRAG	2 cut(s)	78, 1144
SmoI	CTYRAG	2 cut(s)	78, 1144
Sse9I	AATT	9 cut(s)	122, 672, 721, 770, 946, 974, 1183, 1207, 1294
SsiI	CCGC	3 cut(s)	87, 356, 797
SspMI	CTAG	4 cut(s)	210, 230, 353, 812
StyI	CCWWGG	2 cut(s)	1158, 1284
TaaI	ACNGT	2 cut(s)	161, 710
TaiI	ACGT	2 cut(s)	274, 1308
TaqI	TCGA	5 cut(s)	292, 455, 553, 936, 1205
TasI	AATT	9 cut(s)	122, 672, 721, 770, 946, 974, 1183, 1207, 1294
TatI	WGTACW	3 cut(s)	349, 1152, 1199
TfiI	GAWTC	1 cut(s)	602
Tru1I	TTAA	2 cut(s)	168, 720
Tru9I	TTAA	2 cut(s)	168, 720
TscAI	CASTG	2 cut(s)	397, 540
TseFI	GTSAC	3 cut(s)	261, 712, 919
Tsp45I	GTSAC	3 cut(s)	261, 712, 919
TspRI	CASTG	2 cut(s)	397, 540
Tth111I	GACNNNGTC	1 cut(s)	710
VpaK11BI	GGWCC	1 cut(s)	581
XagI	CCTNNNNNAGG	1 cut(s)	1007
XapI	RAATTY	1 cut(s)	122
XceI	RCATGY	1 cut(s)	838
XcmI	CCANNNNNNNNNTGG	1 cut(s)	403
XspI	CTAG	4 cut(s)	210, 230, 353, 812

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.