Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0001062

Physical Location & Seq

Genomic Coordinates Reverse (-)

37689682 .. 37690980

Gene Structure 1299 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1262100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1299 bp

ATGTCACCTTTGCTTTCCCTCTTTCTTTTCTCACTCTTTGCTTTCGTTGCTAAAGCTCAAGTTCCCGCAAATCAAACTTTCAAGTTTGTCAATGAAGGTGAATTTGGGCCTTACATTGTAGAATACGATGGAAACTATCGTATGCTCAGTGTGTTTAGCTCTCCCTTCCAACTTGCCTTCTACAACACCACCCCAAATGCCTTTACTCTTGCTCTTCGCATGGGTTTGACTCGTTCGGAGTCACTCTTCCGTTGGGTTTGGGAGGCCAATCGAGGAAACCCAGTTGGCGAAAATGCCACCCTCGCATTTGGAGAAGATGGCAACCTTGTGCTGGCGGATGCCGATGGCCGAGTGGCTTGGCAAACCAACACTGCCAACAAAGGTGTGGTAGGCTTCAAGTTGCTTCCAACAGGCAACATGGTACTTTATGACTCCAAGGGCAACTTTGTTTGGCAAAGCTTTGACCACCCTACCGACACGTTGTTGGTGGGACAATCTCTAAGGCCAGGAACAATAAACAAGCTGGTGAGTCGGGTCTCCGAGACAGAAAACAAAGATGGGCCGTACAGCTTGGTGATGGAGCCTAAGGGAATATTTTTGTACTATAAGAGCAACAACTCTCCCAAATCAATACTCTATTCTCAGTTGTTTACCATTGAGAAAGGCTCACTTGACCATGTCACATTGAATGTTGCACCGGACACAGATGAGGGTTATGCTTATGACATAAGCTTGGAATATCAAGTGGCCAACTCTTCCTCTGGTGGAAATGCCATTCTAGCTAGACCAAAATACAATAGCACACTGACATTCCTTAGGCTTGGAATTGATGGAAATGTCAAGCTGTACACTTACTATGACAAGGTGGATTGGCGTGCATGGGAGGTGACCTTCACTCTTTTCGACAGAGATAATTCGATATGGGAAACCGAGTGCCAATTGCCAGAGCGGTGTGGAAACTTCGGTCTCTGTGAGGACAGCCAATGTGTTGCTTGCCCATCCTCTAAGGGACTATTCGGCTGGAGCAAGGCTTGTGAGCCTGAGAAGCTAGCTTCTTGTGCAGCAAATAGCTTCCACTACTACAAAGTTGAAGGGGTTGATCACTTCATGAGCAAGTACACCCGGGGAACTGCTATAAAGGAGACCGATTGTGGTAAGAAGTGTACTTCGGATTGCAAGTGTTTGGGCTACTTTTACAACCAAGATACGTCAAGGTGTTGGATTGCTTATGATTTAAAAACCTTGACCAAGGTTGCCAATTCTACTCACGTGGCATACATTAAGACACCTAATCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005829 GO:0006810 GO:0006833 GO:0008150 GO:0009505 GO:0012505 GO:0016020 GO:0030312 GO:0031090 GO:0042044 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0051179 GO:0051234 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin PAN_2 S_locus_glycop

Protein Analysis

433

Amino Acids

48.41

Weight (kDa)

5.85

Isoelectric Point (pI)

37.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B_lectin	PF01453	86 - 168	1.6e-19	D-mannose binding lectin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001062)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78850 AT1G78860
fragaria_vesca	FvH4_3g18371 FvH4_3g18380 FvH4_3g18383 FvH4_3g18410
malus_domestica	MD03G1242400.v1.1 MD11G1262100.v1.1 MD11G1262300.v1.1 MD11G1262400.v1.1 MD11G1262600.v1.1
prunus_persica	Prupe.4G165600_v2.0.a1 Prupe.4G166000_v2.0.a1 Prupe.4G166100_v2.0.a1 Prupe.4G166200_v2.0.a1
pyrus_communis	pycom11g23110 pycom11g23150
rosa_chinensis	RchiOBHm_Chr5g0031021 RchiOBHm_Chr5g0031031 RchiOBHm_Chr5g0031081 RchiOBHm_Chr5g0031091 RchiOBHm_Chr5g0031131 RchiOBHm_Chr5g0031141
rosa_laevigata	RLG00000033282 RLG00000033283 RLG00000033284 RLG00000033285
rosa_multiflora	Rmu_co8472871.1_g000001 Rmu_co8500049.1_g000001 Rmu_sc0001523.1_g000001 Rmu_sc0005489.1_g000008 Rmu_sc0020175.1_g000004 Rmu_sc0023422.1_g000001 Rmu_sc0023423.1_g000001
rosa_roxburghii	Rroxscaffold_1G00049150 Rroxscaffold_1G00049170 Rroxscaffold_1G00049190 Rroxscaffold_1G00049200 Rroxscaffold_1G00049210 Rroxscaffold_1G00049240
rosa_rugosa	Rorug05G0122300 Rorug05G0122400 Rorug05G0122500
rosa_samantha	Rh5AG215600 Rh5AG215700 Rh5AG216000 Rh5BG214800 Rh5BG214900 Rh5BG215000 Rh5BG215500 Rh5CG238900 Rh5DG219300 Rh5DG219400 Rh5DG219600 Rh5DG219900 Rh5DG220100
rosa_wichuraiana	Rw5G019730 Rw5G019740 Rw5G019750 Rw5G019760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	949
AciI	CCGC	3 cut(s)	66, 335, 949
AcoI	YGGCCR	2 cut(s)	346, 747
AcsI	RAATTY	1 cut(s)	101
AcvI	CACGTG	1 cut(s)	1270
AfaI	GTAC	6 cut(s)	423, 566, 602, 848, 1118, 1165
AfiI	CCNNNNNNNGG	1 cut(s)	331
AflIII	ACRYGT	1 cut(s)	477
AgsI	TTSAA	4 cut(s)	82, 397, 688, 1091
AjnI	CCWGG	1 cut(s)	505
AjuI	GAANNNNNNNTTGG	2 cut(s)	87, 119
Alw26I	GTCTC	4 cut(s)	536, 541, 971, 1136
Ama87I	CYCGRG	1 cut(s)	1122
AoxI	GGCC	6 cut(s)	107, 264, 346, 503, 560, 747
ApeKI	GCWGC	1 cut(s)	1061
ApoI	RAATTY	1 cut(s)	101
AspS9I	GGNCC	2 cut(s)	107, 560
AsuC2I	CCSGG	2 cut(s)	1123, 1124
AsuHPI	GGTGA	4 cut(s)	110, 538, 586, 898
AsuNHI	GCTAGC	1 cut(s)	1048
AvaI	CYCGRG	1 cut(s)	1122
AxyI	CCTNAGG	2 cut(s)	585, 815
BalI	TGGCCA	1 cut(s)	749
BbrPI	CACGTG	1 cut(s)	1270
BbvI	GCAGC	1 cut(s)	1073
BccI	CCATC	7 cut(s)	122, 311, 338, 551, 571, 824, 1006
BceAI	ACGGC	1 cut(s)	547
BciT130I	CCWGG	1 cut(s)	507
BclI	TGATCA	1 cut(s)	1099
BcnI	CCSGG	2 cut(s)	1123, 1124
BcoDI	GTCTC	4 cut(s)	536, 541, 971, 1136
BfaI	CTAG	3 cut(s)	779, 783, 1049
BisI	GCNGC	1 cut(s)	1062
BlsI	GCNGC	1 cut(s)	1063
Bme1390I	CCNGG	3 cut(s)	507, 1123, 1124
BmeT110I	CYCGRG	1 cut(s)	1122
BmgT120I	GGNCC	2 cut(s)	107, 560
BmiI	GGNNCC	1 cut(s)	582
BmrFI	CCNGG	3 cut(s)	507, 1123, 1124
BmrI	ACTGGG	1 cut(s)	275
BmsI	GCATC	1 cut(s)	328
BmtI	GCTAGC	1 cut(s)	1052
BmuI	ACTGGG	1 cut(s)	275
BplI	GAGNNNNNCTC	2 cut(s)	650, 682
BpmI	CTGGAG	1 cut(s)	1042
BpuEI	CTTGAG	1 cut(s)	42
BpuMI	CCSGG	2 cut(s)	1123, 1124
BsaAI	YACGTR	1 cut(s)	1270
BsaI	GGTCTC	3 cut(s)	541, 971, 1136
BsaJI	CCNNGG	4 cut(s)	435, 1122, 1123, 1248
BsaWI	WCCGGW	1 cut(s)	697
Bsc4I	CCNNNNNNNGG	1 cut(s)	331
Bse1I	ACTGG	1 cut(s)	281
Bse21I	CCTNAGG	2 cut(s)	585, 815
BseBI	CCWGG	1 cut(s)	507
BseDI	CCNNGG	4 cut(s)	435, 1122, 1123, 1248
BseGI	GGATG	2 cut(s)	343, 998
BseLI	CCNNNNNNNGG	1 cut(s)	331
BseMII	CTCAG	3 cut(s)	160, 656, 1032
BseNI	ACTGG	1 cut(s)	281
BseXI	GCAGC	1 cut(s)	1073
BsgI	GTGCAG	1 cut(s)	1080
BshFI	GGCC	6 cut(s)	109, 266, 348, 505, 562, 749
BsiHKCI	CYCGRG	1 cut(s)	1122
BsiSI	CCGG	2 cut(s)	698, 1123
BslFI	GGGAC	2 cut(s)	504, 1023
BslI	CCNNNNNNNGG	1 cut(s)	331
BsmAI	GTCTC	4 cut(s)	536, 541, 971, 1136
BsmFI	GGGAC	2 cut(s)	504, 1023
BsnI	GGCC	6 cut(s)	109, 266, 348, 505, 562, 749
Bso31I	GGTCTC	3 cut(s)	541, 971, 1136
BsoBI	CYCGRG	1 cut(s)	1122
Bsp1407I	TGTACA	1 cut(s)	846
Bsp143I	GATC	1 cut(s)	1099
BspACI	CCGC	3 cut(s)	66, 335, 949
BspANI	GGCC	6 cut(s)	109, 266, 348, 505, 562, 749
BspCNI	CTCAG	3 cut(s)	159, 655, 1033
BspHI	TCATGA	1 cut(s)	1107
BspLI	GGNNCC	1 cut(s)	582
BspOI	GCTAGC	1 cut(s)	1052
BspQI	GCTCTTC	1 cut(s)	219
BspTNI	GGTCTC	3 cut(s)	541, 971, 1136
BsrBI	CCGCTC	1 cut(s)	949
BsrGI	TGTACA	1 cut(s)	846
BsrI	ACTGG	1 cut(s)	281
BssECI	CCNNGG	4 cut(s)	435, 1122, 1123, 1248
BssMI	GATC	1 cut(s)	1099
BssT1I	CCWWGG	2 cut(s)	435, 1248
Bst2UI	CCWGG	1 cut(s)	507
Bst6I	CTCTTC	3 cut(s)	219, 251, 760
BstAUI	TGTACA	1 cut(s)	846
BstBAI	YACGTR	1 cut(s)	1270
BstC8I	GCNNGC	4 cut(s)	333, 876, 994, 1050
BstDEI	CTNAG	7 cut(s)	146, 500, 585, 642, 815, 1005, 1041
BstEII	GGTNACC	1 cut(s)	886
BstF5I	GGATG	2 cut(s)	343, 998
BstKTI	GATC	1 cut(s)	1102
BstMAI	GTCTC	4 cut(s)	536, 541, 971, 1136
BstMBI	GATC	1 cut(s)	1099
BstMWI	GCNNNNNNNGC	5 cut(s)	47, 302, 779, 1045, 1058
BstNI	CCWGG	1 cut(s)	507
BstPI	GGTNACC	1 cut(s)	886
BstSCI	CCNGG	3 cut(s)	505, 1121, 1122
BstV1I	GCAGC	1 cut(s)	1073
Bsu36I	CCTNAGG	2 cut(s)	585, 815
BsuRI	GGCC	6 cut(s)	109, 266, 348, 505, 562, 749
BtsCI	GGATG	2 cut(s)	343, 998
BtsI	GCAGTG	1 cut(s)	369
BtsIMutI	CAGTG	3 cut(s)	154, 369, 803
Cac8I	GCNNGC	4 cut(s)	333, 876, 994, 1050
CciI	TCATGA	1 cut(s)	1107
Cfr13I	GGNCC	2 cut(s)	107, 560
Cfr9I	CCCGGG	1 cut(s)	1122
Csp6I	GTAC	6 cut(s)	422, 565, 601, 847, 1117, 1164
CviAII	CATG	5 cut(s)	220, 418, 677, 879, 1108
CviQI	GTAC	6 cut(s)	422, 565, 601, 847, 1117, 1164
DdeI	CTNAG	7 cut(s)	146, 500, 585, 642, 815, 1005, 1041
DpnI	GATC	1 cut(s)	1101
DpnII	GATC	1 cut(s)	1099
DraI	TTTAAA	1 cut(s)	1236
EaeI	YGGCCR	2 cut(s)	346, 747
Eam1104I	CTCTTC	3 cut(s)	219, 251, 760
EarI	CTCTTC	3 cut(s)	219, 251, 760
EciI	GGCGGA	1 cut(s)	350
Eco130I	CCWWGG	2 cut(s)	435, 1248
Eco31I	GGTCTC	3 cut(s)	541, 971, 1136
Eco72I	CACGTG	1 cut(s)	1270
Eco81I	CCTNAGG	2 cut(s)	585, 815
Eco88I	CYCGRG	1 cut(s)	1122
Eco91I	GGTNACC	1 cut(s)	886
EcoO65I	GGTNACC	1 cut(s)	886
EcoRII	CCWGG	1 cut(s)	505
EcoT14I	CCWWGG	2 cut(s)	435, 1248
ErhI	CCWWGG	2 cut(s)	435, 1248
FaeI	CATG	5 cut(s)	223, 421, 680, 882, 1111
FalI	AAGNNNNNCTT	4 cut(s)	428, 460, 654, 686
FaqI	GGGAC	2 cut(s)	504, 1023
FatI	CATG	5 cut(s)	219, 417, 676, 878, 1107
FauI	CCCGC	1 cut(s)	73
FbaI	TGATCA	1 cut(s)	1099
Fnu4HI	GCNGC	1 cut(s)	1062
FokI	GGATG	2 cut(s)	350, 985
Fsp4HI	GCNGC	1 cut(s)	1062
FspBI	CTAG	3 cut(s)	779, 783, 1049
GluI	GCNGC	1 cut(s)	1062
GsuI	CTGGAG	1 cut(s)	1042
HaeIII	GGCC	6 cut(s)	109, 266, 348, 505, 562, 749
HapII	CCGG	2 cut(s)	698, 1123
Hin1II	CATG	5 cut(s)	223, 421, 680, 882, 1111
HindIII	AAGCTT	2 cut(s)	457, 730
HinfI	GANTC	4 cut(s)	229, 239, 431, 529
HpaII	CCGG	2 cut(s)	698, 1123
HphI	GGTGA	4 cut(s)	110, 538, 586, 898
Hpy166II	GTNNAC	4 cut(s)	651, 849, 1119, 1164
Hpy188I	TCNGA	3 cut(s)	238, 541, 1171
Hpy188III	TCNNGA	1 cut(s)	1108
Hpy8I	GTNNAC	4 cut(s)	651, 849, 1119, 1164
HpyAV	CCTTC	5 cut(s)	89, 175, 187, 901, 1085
HpyCH4IV	ACGT	3 cut(s)	479, 1208, 1269
HpyCH4V	TGCA	4 cut(s)	695, 878, 1061, 1176
HpyF10VI	GCNNNNNNNGC	5 cut(s)	47, 302, 779, 1045, 1058
HpyF3I	CTNAG	7 cut(s)	146, 500, 585, 642, 815, 1005, 1041
HpySE526I	ACGT	3 cut(s)	479, 1208, 1269
Hsp92II	CATG	5 cut(s)	223, 421, 680, 882, 1111
Ksp22I	TGATCA	1 cut(s)	1099
Kzo9I	GATC	1 cut(s)	1099
LguI	GCTCTTC	1 cut(s)	219
LmnI	GCTCC	2 cut(s)	580, 1023
Lsp1109I	GCAGC	1 cut(s)	1073
LweI	GCATC	1 cut(s)	328
MaeI	CTAG	3 cut(s)	779, 783, 1049
MaeII	ACGT	3 cut(s)	479, 1208, 1269
MaeIII	GTNAC	4 cut(s)	3, 240, 679, 886
MalI	GATC	1 cut(s)	1101
MbiI	CCGCTC	1 cut(s)	949
MboI	GATC	1 cut(s)	1099
MboII	GAAGA	4 cut(s)	206, 238, 326, 747
MfeI	CAATTG	1 cut(s)	938
MlsI	TGGCCA	1 cut(s)	749
MluCI	AATT	5 cut(s)	101, 825, 913, 938, 1258
MluNI	TGGCCA	1 cut(s)	749
MlyI	GAGTC	4 cut(s)	223, 248, 425, 538
MmeI	TCCRAC	3 cut(s)	193, 431, 1199
MnlI	CCTC	9 cut(s)	29, 256, 266, 311, 703, 769, 877, 967, 1012
Mox20I	TGGCCA	1 cut(s)	749
MscI	TGGCCA	1 cut(s)	749
MseI	TTAA	2 cut(s)	1235, 1281
Msp20I	TGGCCA	1 cut(s)	749
MspI	CCGG	2 cut(s)	698, 1123
MspR9I	CCNGG	3 cut(s)	507, 1123, 1124
MunI	CAATTG	1 cut(s)	938
MvaI	CCWGG	1 cut(s)	507
MwoI	GCNNNNNNNGC	5 cut(s)	47, 302, 779, 1045, 1058
NciI	CCSGG	2 cut(s)	1123, 1124
NdeII	GATC	1 cut(s)	1099
NheI	GCTAGC	1 cut(s)	1048
NlaIII	CATG	5 cut(s)	223, 421, 680, 882, 1111
NlaIV	GGNNCC	1 cut(s)	582
NmeAIII	GCCGAG	1 cut(s)	374
NmuCI	GTSAC	4 cut(s)	3, 240, 679, 886
PagI	TCATGA	1 cut(s)	1107
PciSI	GCTCTTC	1 cut(s)	219
PflFI	GACNNNGTC	1 cut(s)	677
PkrI	GCNGC	1 cut(s)	1063
PleI	GAGTC	4 cut(s)	223, 247, 425, 537
PmaCI	CACGTG	1 cut(s)	1270
PmlI	CACGTG	1 cut(s)	1270
PpsI	GAGTC	4 cut(s)	223, 247, 425, 537
Ppu21I	YACGTR	1 cut(s)	1270
Psp6I	CCWGG	1 cut(s)	505
PspCI	CACGTG	1 cut(s)	1270
PspEI	GGTNACC	1 cut(s)	886
PspGI	CCWGG	1 cut(s)	505
PspN4I	GGNNCC	1 cut(s)	582
PspPI	GGNCC	2 cut(s)	107, 560
PsyI	GACNNNGTC	1 cut(s)	677
RsaI	GTAC	6 cut(s)	423, 566, 602, 848, 1118, 1165
RsaNI	GTAC	6 cut(s)	422, 565, 601, 847, 1117, 1164
SapI	GCTCTTC	1 cut(s)	219
SaqAI	TTAA	2 cut(s)	1235, 1281
SatI	GCNGC	1 cut(s)	1062
Sau3AI	GATC	1 cut(s)	1099
Sau96I	GGNCC	2 cut(s)	107, 560
SchI	GAGTC	4 cut(s)	223, 248, 425, 538
ScrFI	CCNGG	3 cut(s)	507, 1123, 1124
SfaNI	GCATC	1 cut(s)	328
SmaI	CCCGGG	1 cut(s)	1124
SmlI	CTYRAG	1 cut(s)	57
SmoI	CTYRAG	1 cut(s)	57
Sse9I	AATT	5 cut(s)	101, 825, 913, 938, 1258
SsiI	CCGC	3 cut(s)	66, 335, 949
SspI	AATATT	1 cut(s)	594
SspMI	CTAG	3 cut(s)	779, 783, 1049
StyD4I	CCNGG	3 cut(s)	505, 1121, 1122
StyI	CCWWGG	2 cut(s)	435, 1248
TaiI	ACGT	3 cut(s)	482, 1211, 1272
TaqI	TCGA	3 cut(s)	271, 903, 917
TaqII	GACCGA	2 cut(s)	953, 1160
TasI	AATT	5 cut(s)	101, 825, 913, 938, 1258
TatI	WGTACW	4 cut(s)	600, 846, 1116, 1163
Tru1I	TTAA	2 cut(s)	1235, 1281
Tru9I	TTAA	2 cut(s)	1235, 1281
TscAI	CASTG	3 cut(s)	154, 376, 810
TseFI	GTSAC	4 cut(s)	3, 240, 679, 886
TseI	GCWGC	1 cut(s)	1061
Tsp45I	GTSAC	4 cut(s)	3, 240, 679, 886
TspDTI	ATGAA	2 cut(s)	108, 1096
TspGWI	ACGGA	1 cut(s)	239
TspMI	CCCGGG	1 cut(s)	1122
TspRI	CASTG	3 cut(s)	154, 376, 810
Tth111I	GACNNNGTC	1 cut(s)	677
XapI	RAATTY	1 cut(s)	101
XcmI	CCANNNNNNNNNTGG	1 cut(s)	382
XmaI	CCCGGG	1 cut(s)	1122
XspI	CTAG	3 cut(s)	779, 783, 1049

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.