Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0001062

Physical Location & Seq

Genomic Coordinates Forward (+)

11759035 .. 11759916

Gene Structure 882 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g18410.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGGTACGCTTCAGATTGCTTCCCAATGGAAACATGGTGCTCTATGATTCAAAGGGTAGCTTTGTTTGGCAAAGTTTTGACTACCCTACTGACACTTTGCTGGTGGGACAATCTCTACGAGTAGGAGAAGCGAACAAGCTCGTGAGCAGGGCTTCACGTCAAGAGAACAAAGATGGACCGTATAGCTTGGTTTTGAATACCAAGGGATTGTATTTGTACTACAAGAGCAGCAATACCCTAAAGCAGCTGCCCTACTCTGAGCTCTTTACTATTTGGAAGGGATCAATGGGATATGCAACATTAGAGAGCACTACGGATGATGGTTATCTGTGGGAGATTACCTTAACCACTTCGGGTGGAATCATCCAGCTTGATCGACCCAAGTTCAATGCCACATTGTCATACCTTCGGCTCGCAATAGATGGCAATCTTCAACTTTACACATACGATGCTAAGATTGATTCGTGGGAGCATCCATTTACTCTTTTCGATAGACAATCAGTTCGGGAAACCGAATGCCAGTTGCCAGAGCGATGCGGCAGCTTTGGCGTTTGCGAGGACAACCAATGCGTATCTTGCCCGTCGTCTAAGGGAATTCTGGGCTGGAGCAAGACCTGTGCGCCTGAGAAGCTGACTTCTTGCAAGGCAAACAGCTTCCGCTACTACAAGGTTGAAGGGGTTGATCATTTCATGAGCAAGTACACTACTGGATCGGCTACCAAGGAGGTCGACTGCGGTAAGAAATGTACTTTCGACTGCAAGTGTTTGGGATACTTCTACAACCAGGACACCTCAAGGTGTTGGATTGCTTACGAGTTGATGACCTTGACGAAAGTTGCCAACTCAACTCATGTGGGATACATCAAGGCACCTAATAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005829 GO:0006810 GO:0006833 GO:0008150 GO:0009505 GO:0012505 GO:0016020 GO:0030312 GO:0031090 GO:0042044 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0051179 GO:0051234 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin PAN_2 S_locus_glycop

Protein Analysis

294

Amino Acids

33.22

Weight (kDa)

8.34

Isoelectric Point (pI)

40.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B_lectin	PF01453	5 - 45	1.6e-08	D-mannose binding lectin
S_locus_glycop	PF00954	130 - 198	5.4e-06	S-locus glycoprotein domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001062)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78850 AT1G78860
fragaria_vesca	FvH4_3g18371 FvH4_3g18380 FvH4_3g18383 FvH4_3g18410
malus_domestica	MD03G1242400.v1.1 MD11G1262100.v1.1 MD11G1262300.v1.1 MD11G1262400.v1.1 MD11G1262600.v1.1
prunus_persica	Prupe.4G165600_v2.0.a1 Prupe.4G166000_v2.0.a1 Prupe.4G166100_v2.0.a1 Prupe.4G166200_v2.0.a1
pyrus_communis	pycom11g23110 pycom11g23150
rosa_chinensis	RchiOBHm_Chr5g0031021 RchiOBHm_Chr5g0031031 RchiOBHm_Chr5g0031081 RchiOBHm_Chr5g0031091 RchiOBHm_Chr5g0031131 RchiOBHm_Chr5g0031141
rosa_laevigata	RLG00000033282 RLG00000033283 RLG00000033284 RLG00000033285
rosa_multiflora	Rmu_co8472871.1_g000001 Rmu_co8500049.1_g000001 Rmu_sc0001523.1_g000001 Rmu_sc0005489.1_g000008 Rmu_sc0020175.1_g000004 Rmu_sc0023422.1_g000001 Rmu_sc0023423.1_g000001
rosa_roxburghii	Rroxscaffold_1G00049150 Rroxscaffold_1G00049170 Rroxscaffold_1G00049190 Rroxscaffold_1G00049200 Rroxscaffold_1G00049210 Rroxscaffold_1G00049240
rosa_rugosa	Rorug05G0122300 Rorug05G0122400 Rorug05G0122500
rosa_samantha	Rh5AG215600 Rh5AG215700 Rh5AG216000 Rh5BG214800 Rh5BG214900 Rh5BG215000 Rh5BG215500 Rh5CG238900 Rh5DG219300 Rh5DG219400 Rh5DG219600 Rh5DG219900 Rh5DG220100
rosa_wichuraiana	Rw5G019730 Rw5G019740 Rw5G019750 Rw5G019760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	868
AccI	GTMKAC	1 cut(s)	729
AciI	CCGC	3 cut(s)	537, 658, 735
AclWI	GGATC	2 cut(s)	289, 718
AcsI	RAATTY	1 cut(s)	594
AfaI	GTAC	4 cut(s)	6, 218, 701, 748
AgsI	TTSAA	5 cut(s)	51, 196, 388, 434, 674
AjiI	CACGTC	1 cut(s)	158
AjnI	CCWGG	1 cut(s)	783
AluBI	AGCT	9 cut(s)	60, 139, 186, 247, 262, 370, 543, 631, 654
AluI	AGCT	9 cut(s)	60, 139, 186, 247, 262, 370, 543, 631, 654
Alw21I	GWGCWC	3 cut(s)	42, 264, 311
AlwI	GGATC	2 cut(s)	289, 718
ApeKI	GCWGC	4 cut(s)	228, 244, 247, 540
ApoI	RAATTY	1 cut(s)	594
ArsI	GACNNNNNNTTYG	2 cut(s)	486, 518
AspLEI	GCGC	1 cut(s)	622
AspS9I	GGNCC	1 cut(s)	176
AvaII	GGWCC	1 cut(s)	176
BanI	GGYRCC	1 cut(s)	868
BanII	GRGCYC	1 cut(s)	264
BauI	CACGAG	1 cut(s)	140
Bbv12I	GWGCWC	3 cut(s)	42, 264, 311
BbvI	GCAGC	4 cut(s)	234, 240, 256, 552
BccI	CCATC	3 cut(s)	167, 314, 416
BciT130I	CCWGG	1 cut(s)	785
BciVI	GTATCC	2 cut(s)	764, 851
BclI	TGATCA	1 cut(s)	682
BfuI	GTATCC	2 cut(s)	764, 851
BisI	GCNGC	5 cut(s)	229, 245, 248, 538, 541
BlsI	GCNGC	5 cut(s)	230, 246, 249, 539, 542
Bme1390I	CCNGG	1 cut(s)	785
Bme18I	GGWCC	1 cut(s)	176
BmgBI	CACGTC	1 cut(s)	158
BmgT120I	GGNCC	1 cut(s)	176
BmiI	GGNNCC	1 cut(s)	870
BmrFI	CCNGG	1 cut(s)	785
BmsI	GCATC	3 cut(s)	439, 481, 524
BpmI	CTGGAG	1 cut(s)	625
BpuEI	CTTGAG	1 cut(s)	778
BsaBI	GATNNNNATC	2 cut(s)	324, 426
BsaJI	CCNNGG	2 cut(s)	201, 720
Bse1I	ACTGG	2 cut(s)	520, 712
Bse8I	GATNNNNATC	2 cut(s)	324, 426
BseBI	CCWGG	1 cut(s)	785
BseDI	CCNNGG	2 cut(s)	201, 720
BseGI	GGATG	3 cut(s)	322, 363, 472
BseJI	GATNNNNATC	2 cut(s)	324, 426
BseMII	CTCAG	2 cut(s)	249, 615
BseNI	ACTGG	2 cut(s)	520, 712
BseXI	GCAGC	4 cut(s)	234, 240, 256, 552
BshNI	GGYRCC	1 cut(s)	868
BsiHKAI	GWGCWC	3 cut(s)	42, 264, 311
BslFI	GGGAC	1 cut(s)	120
BsmFI	GGGAC	1 cut(s)	120
BsmI	GAATGC	1 cut(s)	521
Bsp1286I	GDGCHC	3 cut(s)	42, 264, 311
Bsp143I	GATC	4 cut(s)	281, 373, 682, 710
BspACI	CCGC	3 cut(s)	537, 658, 735
BspCNI	CTCAG	2 cut(s)	250, 616
BspHI	TCATGA	1 cut(s)	690
BspLI	GGNNCC	1 cut(s)	870
BspPI	GGATC	2 cut(s)	289, 718
BspT107I	GGYRCC	1 cut(s)	868
BsrI	ACTGG	2 cut(s)	520, 712
BssECI	CCNNGG	2 cut(s)	201, 720
BssMI	GATC	4 cut(s)	281, 373, 682, 710
BssSI	CACGAG	1 cut(s)	140
BssT1I	CCWWGG	2 cut(s)	201, 720
Bst2BI	CACGAG	1 cut(s)	140
Bst2UI	CCWGG	1 cut(s)	785
Bst4CI	ACNGT	1 cut(s)	180
BstC8I	GCNNGC	1 cut(s)	414
BstDEI	CTNAG	4 cut(s)	258, 453, 588, 624
BstF5I	GGATG	3 cut(s)	322, 363, 472
BstHHI	GCGC	1 cut(s)	622
BstKTI	GATC	4 cut(s)	284, 376, 685, 713
BstMBI	GATC	4 cut(s)	281, 373, 682, 710
BstMWI	GCNNNNNNNGC	3 cut(s)	546, 576, 628
BstNI	CCWGG	1 cut(s)	785
BstSCI	CCNGG	1 cut(s)	783
BstV1I	GCAGC	4 cut(s)	234, 240, 256, 552
BsuI	GTATCC	2 cut(s)	764, 851
BtgZI	GCGATG	1 cut(s)	547
BtrI	CACGTC	1 cut(s)	158
BtsCI	GGATG	3 cut(s)	322, 363, 472
Cac8I	GCNNGC	1 cut(s)	414
CciI	TCATGA	1 cut(s)	690
CfoI	GCGC	1 cut(s)	622
Cfr13I	GGNCC	1 cut(s)	176
Csp6I	GTAC	4 cut(s)	5, 217, 700, 747
CspCI	CAANNNNNGTGG	2 cut(s)	834, 869
CviAII	CATG	3 cut(s)	34, 691, 851
CviQI	GTAC	4 cut(s)	5, 217, 700, 747
DdeI	CTNAG	4 cut(s)	258, 453, 588, 624
DpnI	GATC	4 cut(s)	283, 375, 684, 712
DpnII	GATC	4 cut(s)	281, 373, 682, 710
Ecl136II	GAGCTC	1 cut(s)	262
Eco130I	CCWWGG	2 cut(s)	201, 720
Eco24I	GRGCYC	1 cut(s)	264
Eco47I	GGWCC	1 cut(s)	176
Eco53kI	GAGCTC	1 cut(s)	262
EcoICRI	GAGCTC	1 cut(s)	262
EcoRI	GAATTC	1 cut(s)	594
EcoRII	CCWGG	1 cut(s)	783
EcoT14I	CCWWGG	2 cut(s)	201, 720
EcoT38I	GRGCYC	1 cut(s)	264
ErhI	CCWWGG	2 cut(s)	201, 720
FaeI	CATG	3 cut(s)	37, 694, 854
FaiI	YATR	8 cut(s)	35, 45, 183, 294, 403, 445, 692, 852
FalI	AAGNNNNNCTT	2 cut(s)	44, 76
FaqI	GGGAC	1 cut(s)	120
FatI	CATG	3 cut(s)	33, 690, 850
FbaI	TGATCA	1 cut(s)	682
FblI	GTMKAC	1 cut(s)	729
Fnu4HI	GCNGC	5 cut(s)	229, 245, 248, 538, 541
FokI	GGATG	3 cut(s)	329, 350, 459
FriOI	GRGCYC	1 cut(s)	264
Fsp4HI	GCNGC	5 cut(s)	229, 245, 248, 538, 541
GlaI	GCGC	1 cut(s)	621
GluI	GCNGC	5 cut(s)	229, 245, 248, 538, 541
GsuI	CTGGAG	1 cut(s)	625
HhaI	GCGC	1 cut(s)	622
Hin1II	CATG	3 cut(s)	37, 694, 854
Hin6I	GCGC	1 cut(s)	620
HinP1I	GCGC	1 cut(s)	620
HincII	GTYRAC	1 cut(s)	730
HindII	GTYRAC	1 cut(s)	730
HinfI	GANTC	3 cut(s)	47, 360, 461
Hpy166II	GTNNAC	2 cut(s)	702, 730
Hpy188I	TCNGA	2 cut(s)	14, 259
Hpy188III	TCNNGA	4 cut(s)	142, 161, 506, 691
Hpy8I	GTNNAC	2 cut(s)	702, 730
Hpy99I	CGWCG	1 cut(s)	586
HpyAV	CCTTC	3 cut(s)	271, 416, 668
HpyCH4III	ACNGT	1 cut(s)	180
HpyCH4IV	ACGT	1 cut(s)	157
HpyCH4V	TGCA	3 cut(s)	296, 642, 759
HpyF10VI	GCNNNNNNNGC	3 cut(s)	546, 576, 628
HpyF3I	CTNAG	4 cut(s)	258, 453, 588, 624
HpySE526I	ACGT	1 cut(s)	157
Hsp92II	CATG	3 cut(s)	37, 694, 854
HspAI	GCGC	1 cut(s)	620
Ksp22I	TGATCA	1 cut(s)	682
Kzo9I	GATC	4 cut(s)	281, 373, 682, 710
LmnI	GCTCC	2 cut(s)	469, 606
Lsp1109I	GCAGC	4 cut(s)	234, 240, 256, 552
LweI	GCATC	3 cut(s)	439, 481, 524
MaeII	ACGT	1 cut(s)	157
MalI	GATC	4 cut(s)	283, 375, 684, 712
MboI	GATC	4 cut(s)	281, 373, 682, 710
MboII	GAAGA	1 cut(s)	422
MhlI	GDGCHC	3 cut(s)	42, 264, 311
MluCI	AATT	1 cut(s)	594
MmeI	TCCRAC	1 cut(s)	782
MnlI	CCTC	3 cut(s)	550, 718, 802
MseI	TTAA	1 cut(s)	344
MspA1I	CMGCKG	1 cut(s)	247
MspR9I	CCNGG	1 cut(s)	785
Mva1269I	GAATGC	1 cut(s)	521
MvaI	CCWGG	1 cut(s)	785
MwoI	GCNNNNNNNGC	3 cut(s)	546, 576, 628
NdeII	GATC	4 cut(s)	281, 373, 682, 710
NlaIII	CATG	3 cut(s)	37, 694, 854
NlaIV	GGNNCC	1 cut(s)	870
PagI	TCATGA	1 cut(s)	690
PctI	GAATGC	1 cut(s)	521
PfeI	GAWTC	3 cut(s)	47, 360, 461
PkrI	GCNGC	5 cut(s)	230, 246, 249, 539, 542
Psp124BI	GAGCTC	1 cut(s)	264
Psp6I	CCWGG	1 cut(s)	783
PspGI	CCWGG	1 cut(s)	783
PspN4I	GGNNCC	1 cut(s)	870
PspPI	GGNCC	1 cut(s)	176
PvuII	CAGCTG	1 cut(s)	247
RsaI	GTAC	4 cut(s)	6, 218, 701, 748
RsaNI	GTAC	4 cut(s)	5, 217, 700, 747
SacI	GAGCTC	1 cut(s)	264
SalI	GTCGAC	1 cut(s)	728
SaqAI	TTAA	1 cut(s)	344
SatI	GCNGC	5 cut(s)	229, 245, 248, 538, 541
Sau3AI	GATC	4 cut(s)	281, 373, 682, 710
Sau96I	GGNCC	1 cut(s)	176
ScrFI	CCNGG	1 cut(s)	785
SduI	GDGCHC	3 cut(s)	42, 264, 311
SfaNI	GCATC	3 cut(s)	439, 481, 524
SinI	GGWCC	1 cut(s)	176
SmlI	CTYRAG	1 cut(s)	793
SmoI	CTYRAG	1 cut(s)	793
Sse9I	AATT	1 cut(s)	594
SsiI	CCGC	3 cut(s)	537, 658, 735
SstI	GAGCTC	1 cut(s)	264
StyD4I	CCNGG	1 cut(s)	783
StyI	CCWWGG	2 cut(s)	201, 720
TaaI	ACNGT	1 cut(s)	180
TaiI	ACGT	1 cut(s)	160
TaqI	TCGA	4 cut(s)	376, 489, 729, 753
TasI	AATT	1 cut(s)	594
TatI	WGTACW	3 cut(s)	216, 699, 746
TauI	GCSGC	1 cut(s)	540
TfiI	GAWTC	3 cut(s)	47, 360, 461
Tru1I	TTAA	1 cut(s)	344
Tru9I	TTAA	1 cut(s)	344
TseI	GCWGC	4 cut(s)	228, 244, 247, 540
TspDTI	ATGAA	1 cut(s)	679
TspGWI	ACGGA	1 cut(s)	329
VpaK11BI	GGWCC	1 cut(s)	176
XapI	RAATTY	1 cut(s)	594
XcmI	CCANNNNNNNNNTGG	1 cut(s)	31
XmiI	GTMKAC	1 cut(s)	729

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.