Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0001062

Physical Location & Seq

Genomic Coordinates Forward (+)

25460477 .. 25462217

Gene Structure 1741 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG216000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1290 bp

ATGTCTTACCCTACATTTACAAAGACATTGCTCTCCCTGTTTCTTTTCTCCATCTTTGCTTTCATTGCTCAAGCTCAAGTTCCTGCAAATGAAACTTTCACCCTTATCAATGAGGGAGAATTCGGGCCTTATGTTGTCGAGTATTTCGGAGACTACCGTATGCTGCCTCAGGTCTTCAGCTCCCCTTTCCAGCTTGGTTTCTATAACACCACCCCTAATGCCTTCACTCTTGCTCTTCGTATGGGTTTGACGCGTTCGGAGTCACTCATGCGTTGGGTTTGGGAGGCCAACCGTGGAAACCCTGTTGGCGAAAATGCCACTTTCTCTTTGGGGACCGACGGGAACCTCGTCTTGGCCAATGCCGATGGCCGTGTGGCGTGGCAAACCAACACTAGCAACAAAGGTGTAATAGGTTTCACATTGCTTCCCACTGGCAACATGGTCCTATATGACTCAAGGGGTAACTTTGTTTGGCAGAGTTTTGACTCCCCTACCGACACTTTGTTGGTGGGTCAATCTCTACGAGCTAGCGGAGTAAGCAAGCTTGTGAGCCGGGCGTCGGAGAAAGAAAACAAAGATGGTCCTTACAGCCTGGTCTTGGAGCCAAAGGGATTGTTTTTGTACTACAAGAGCAGCATCTCCAAAAAGTCACTGCTCTACTCTCAATTCACTAACATTCAGCAGGGAACTTTGGATAATGTGACGTTGAACAGCGCCACTGATGATGGTTTTGTTTGGGACTTATCTTTATTGACCTCGGGTGGAAACAATCTCTATCTAGCTAGACCCAAATTCAATGGCACCTTGACATACCTCAGGCTCGGAATTGATGGAAACATCAAGCTTTACACTTACTACGGCCAGGTAGATTCATGGGAGCAGACCTTCACACTTTTCGACAGGGACTCAAACTTTGAAACCGAGTGCCAGTTGCCGGAGCGATGCGGGAGCTTGGGTGTTTGCGAGGACAACCAGTGCGTTGCTTGCCCAACGTCTAACGGACTATCGGGTTGGAGCAAAACTTGTGCGCCGGAGAAGCTAACTTCATGCAAGGCAAACAGCTTTCGCTACTACAAGGTTGAAGGTGTAGATCATTTCTTGAGCAAGTATAATACAGGATCAGCTACAAAGGAGGTCGACTGTGGTAAGAAGTGTAGTTCCGACTGCAAGTGTCTGGGCTACTTTTACAACAGGGATACGTCAAGGTGTTTGATAGCTTATGAGTTGAAGACCTTGACCAAAGTTGCAAATTCAACACATGTGGGTTTCATCAAGGCACCAAACCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005829 GO:0006810 GO:0006833 GO:0008150 GO:0009505 GO:0012505 GO:0016020 GO:0030312 GO:0031090 GO:0042044 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0051179 GO:0051234 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin PAN_2 S_locus_glycop

Protein Analysis

429

Amino Acids

47.71

Weight (kDa)

6.81

Isoelectric Point (pI)

31.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B_lectin	PF01453	93 - 179	1.2e-18	D-mannose binding lectin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001062)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78850 AT1G78860
fragaria_vesca	FvH4_3g18371 FvH4_3g18380 FvH4_3g18383 FvH4_3g18410
malus_domestica	MD03G1242400.v1.1 MD11G1262100.v1.1 MD11G1262300.v1.1 MD11G1262400.v1.1 MD11G1262600.v1.1
prunus_persica	Prupe.4G165600_v2.0.a1 Prupe.4G166000_v2.0.a1 Prupe.4G166100_v2.0.a1 Prupe.4G166200_v2.0.a1
pyrus_communis	pycom11g23110 pycom11g23150
rosa_chinensis	RchiOBHm_Chr5g0031021 RchiOBHm_Chr5g0031031 RchiOBHm_Chr5g0031081 RchiOBHm_Chr5g0031091 RchiOBHm_Chr5g0031131 RchiOBHm_Chr5g0031141
rosa_laevigata	RLG00000033282 RLG00000033283 RLG00000033284 RLG00000033285
rosa_multiflora	Rmu_co8472871.1_g000001 Rmu_co8500049.1_g000001 Rmu_sc0001523.1_g000001 Rmu_sc0005489.1_g000008 Rmu_sc0020175.1_g000004 Rmu_sc0023422.1_g000001 Rmu_sc0023423.1_g000001
rosa_roxburghii	Rroxscaffold_1G00049150 Rroxscaffold_1G00049170 Rroxscaffold_1G00049190 Rroxscaffold_1G00049200 Rroxscaffold_1G00049210 Rroxscaffold_1G00049240
rosa_rugosa	Rorug05G0122300 Rorug05G0122400 Rorug05G0122500
rosa_samantha	Rh5AG215600 Rh5AG215700 Rh5AG216000 Rh5BG214800 Rh5BG214900 Rh5BG215000 Rh5BG215500 Rh5CG238900 Rh5DG219300 Rh5DG219400 Rh5DG219600 Rh5DG219900 Rh5DG220100
rosa_wichuraiana	Rw5G019730 Rw5G019740 Rw5G019750 Rw5G019760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	800, 1276
AccI	GTMKAC	1 cut(s)	1137
AccII	CGCG	1 cut(s)	253
AciI	CCGC	2 cut(s)	531, 945
AclWI	GGATC	1 cut(s)	1126
AcoI	YGGCCR	3 cut(s)	354, 367, 859
AcsI	RAATTY	3 cut(s)	119, 791, 1249
AcuI	CTGAAG	1 cut(s)	160
AcyI	GRCGYC	1 cut(s)	557
AfaI	GTAC	1 cut(s)	623
AfiI	CCNNNNNNNGG	4 cut(s)	352, 559, 598, 934
AflIII	ACRYGT	2 cut(s)	251, 1258
AgsI	TTSAA	6 cut(s)	709, 796, 917, 1082, 1228, 1254
AjnI	CCWGG	2 cut(s)	591, 861
AjuI	GAANNNNNNNTTGG	2 cut(s)	335, 367
Alw26I	GTCTC	1 cut(s)	144
AlwI	GGATC	1 cut(s)	1126
Ama87I	CYCGRG	1 cut(s)	757
AoxI	GGCC	5 cut(s)	125, 285, 354, 367, 859
ApeKI	GCWGC	2 cut(s)	163, 633
ApoI	RAATTY	3 cut(s)	119, 791, 1249
ArsI	GACNNNNNNTTYG	2 cut(s)	896, 928
AspLEI	GCGC	2 cut(s)	716, 1030
AspS9I	GGNCC	4 cut(s)	125, 333, 442, 581
AsuC2I	CCSGG	1 cut(s)	554
AsuHPI	GGTGA	1 cut(s)	91
AsuNHI	GCTAGC	1 cut(s)	527
AvaI	CYCGRG	1 cut(s)	757
AvaII	GGWCC	3 cut(s)	333, 442, 581
AxyI	CCTNAGG	2 cut(s)	168, 815
BalI	TGGCCA	1 cut(s)	356
BanI	GGYRCC	2 cut(s)	800, 1276
BbsI	GAAGAC	2 cut(s)	166, 1235
BbvI	GCAGC	2 cut(s)	150, 645
BccI	CCATC	5 cut(s)	59, 359, 572, 719, 824
BceAI	ACGGC	2 cut(s)	354, 874
BciT130I	CCWGG	2 cut(s)	593, 863
BciVI	GTATCC	1 cut(s)	1189
BcnI	CCSGG	1 cut(s)	554
BcoDI	GTCTC	1 cut(s)	144
BfaI	CTAG	5 cut(s)	393, 528, 779, 783, 1288
BfoI	RGCGCY	1 cut(s)	717
BfuI	GTATCC	1 cut(s)	1189
BisI	GCNGC	2 cut(s)	164, 634
BlsI	GCNGC	2 cut(s)	165, 635
Bme1390I	CCNGG	3 cut(s)	554, 593, 863
Bme18I	GGWCC	3 cut(s)	333, 442, 581
BmeT110I	CYCGRG	1 cut(s)	757
BmgT120I	GGNCC	4 cut(s)	125, 333, 442, 581
BmiI	GGNNCC	5 cut(s)	334, 344, 603, 802, 1278
BmrFI	CCNGG	3 cut(s)	554, 593, 863
BmsI	GCATC	2 cut(s)	645, 932
BmtI	GCTAGC	1 cut(s)	531
BpiI	GAAGAC	2 cut(s)	166, 1235
BpuEI	CTTGAG	4 cut(s)	54, 60, 439, 1120
BpuMI	CCSGG	1 cut(s)	554
BsaHI	GRCGYC	1 cut(s)	557
BsaJI	CCNNGG	2 cut(s)	292, 756
BsaXI	ACNNNNNCTCC	2 cut(s)	940, 970
Bsc4I	CCNNNNNNNGG	4 cut(s)	352, 559, 598, 934
Bse1I	ACTGG	3 cut(s)	436, 928, 973
Bse21I	CCTNAGG	2 cut(s)	168, 815
Bse3DI	GCAATG	3 cut(s)	26, 63, 419
BseBI	CCWGG	2 cut(s)	593, 863
BseDI	CCNNGG	2 cut(s)	292, 756
BseLI	CCNNNNNNNGG	4 cut(s)	352, 559, 598, 934
BseMI	GCAATG	3 cut(s)	26, 63, 419
BseMII	CTCAG	2 cut(s)	182, 829
BseNI	ACTGG	3 cut(s)	436, 928, 973
BseXI	GCAGC	2 cut(s)	150, 645
Bsh1236I	CGCG	1 cut(s)	253
BshFI	GGCC	5 cut(s)	127, 287, 356, 369, 861
BshNI	GGYRCC	2 cut(s)	800, 1276
BsiHKCI	CYCGRG	1 cut(s)	757
BsiSI	CCGG	3 cut(s)	553, 935, 1031
BslFI	GGGAC	3 cut(s)	346, 752, 917
BslI	CCNNNNNNNGG	4 cut(s)	352, 559, 598, 934
BsmAI	GTCTC	1 cut(s)	144
BsmFI	GGGAC	3 cut(s)	346, 752, 917
BsnI	GGCC	5 cut(s)	127, 287, 356, 369, 861
BsoBI	CYCGRG	1 cut(s)	757
Bsp143I	GATC	2 cut(s)	1090, 1118
BspACI	CCGC	2 cut(s)	531, 945
BspANI	GGCC	5 cut(s)	127, 287, 356, 369, 861
BspCNI	CTCAG	2 cut(s)	181, 828
BspFNI	CGCG	1 cut(s)	253
BspLI	GGNNCC	5 cut(s)	334, 344, 603, 802, 1278
BspOI	GCTAGC	1 cut(s)	531
BspPI	GGATC	1 cut(s)	1126
BspQI	GCTCTTC	1 cut(s)	240
BspT107I	GGYRCC	2 cut(s)	800, 1276
BsrDI	GCAATG	3 cut(s)	26, 63, 419
BsrI	ACTGG	3 cut(s)	436, 928, 973
BssECI	CCNNGG	2 cut(s)	292, 756
BssMI	GATC	2 cut(s)	1090, 1118
BssNI	GRCGYC	1 cut(s)	557
Bst2UI	CCWGG	2 cut(s)	593, 863
Bst4CI	ACNGT	3 cut(s)	158, 293, 1142
Bst6I	CTCTTC	1 cut(s)	240
BstACI	GRCGYC	1 cut(s)	557
BstC8I	GCNNGC	3 cut(s)	529, 542, 985
BstDEI	CTNAG	2 cut(s)	168, 815
BstDSI	CCRYGG	1 cut(s)	292
BstFNI	CGCG	1 cut(s)	253
BstH2I	RGCGCY	1 cut(s)	717
BstHHI	GCGC	2 cut(s)	716, 1030
BstKTI	GATC	2 cut(s)	1093, 1121
BstMAI	GTCTC	1 cut(s)	144
BstMBI	GATC	2 cut(s)	1090, 1118
BstMWI	GCNNNNNNNGC	4 cut(s)	65, 537, 984, 1036
BstNI	CCWGG	2 cut(s)	593, 863
BstNSI	RCATGY	1 cut(s)	1262
BstSCI	CCNGG	3 cut(s)	552, 591, 861
BstUI	CGCG	1 cut(s)	253
BstV1I	GCAGC	2 cut(s)	150, 645
BstV2I	GAAGAC	2 cut(s)	166, 1235
Bsu36I	CCTNAGG	2 cut(s)	168, 815
BsuI	GTATCC	1 cut(s)	1189
BsuRI	GGCC	5 cut(s)	127, 287, 356, 369, 861
BtgI	CCRYGG	1 cut(s)	292
BtgZI	GCGATG	1 cut(s)	955
BtsI	GCAGTG	1 cut(s)	650
BtsIMutI	CAGTG	4 cut(s)	429, 650, 717, 980
Cac8I	GCNNGC	3 cut(s)	529, 542, 985
CfoI	GCGC	2 cut(s)	716, 1030
Cfr13I	GGNCC	4 cut(s)	125, 333, 442, 581
CseI	GACGC	2 cut(s)	259, 546
Csp6I	GTAC	1 cut(s)	622
CspCI	CAANNNNNGTGG	2 cut(s)	1242, 1277
CviAII	CATG	5 cut(s)	268, 439, 873, 1047, 1259
CviQI	GTAC	1 cut(s)	622
DdeI	CTNAG	2 cut(s)	168, 815
DpnI	GATC	2 cut(s)	1092, 1120
DpnII	GATC	2 cut(s)	1090, 1118
EaeI	YGGCCR	3 cut(s)	354, 367, 859
Eam1104I	CTCTTC	1 cut(s)	240
EarI	CTCTTC	1 cut(s)	240
Eco47I	GGWCC	3 cut(s)	333, 442, 581
Eco57I	CTGAAG	1 cut(s)	160
Eco81I	CCTNAGG	2 cut(s)	168, 815
Eco88I	CYCGRG	1 cut(s)	757
EcoRI	GAATTC	1 cut(s)	119
EcoRII	CCWGG	2 cut(s)	591, 861
FaeI	CATG	5 cut(s)	271, 442, 876, 1050, 1262
FaqI	GGGAC	3 cut(s)	346, 752, 917
FatI	CATG	5 cut(s)	267, 438, 872, 1046, 1258
FauI	CCCGC	1 cut(s)	938
FblI	GTMKAC	1 cut(s)	1137
Fnu4HI	GCNGC	2 cut(s)	164, 634
Fsp4HI	GCNGC	2 cut(s)	164, 634
FspBI	CTAG	5 cut(s)	393, 528, 779, 783, 1288
GlaI	GCGC	2 cut(s)	715, 1029
GluI	GCNGC	2 cut(s)	164, 634
HaeII	RGCGCY	1 cut(s)	717
HaeIII	GGCC	5 cut(s)	127, 287, 356, 369, 861
HapII	CCGG	3 cut(s)	553, 935, 1031
HgaI	GACGC	2 cut(s)	259, 546
HhaI	GCGC	2 cut(s)	716, 1030
Hin1I	GRCGYC	1 cut(s)	557
Hin1II	CATG	5 cut(s)	271, 442, 876, 1050, 1262
Hin6I	GCGC	2 cut(s)	714, 1028
HinP1I	GCGC	2 cut(s)	714, 1028
HincII	GTYRAC	1 cut(s)	1138
HindII	GTYRAC	1 cut(s)	1138
HindIII	AAGCTT	2 cut(s)	542, 842
HinfI	GANTC	5 cut(s)	260, 452, 485, 869, 905
HpaII	CCGG	3 cut(s)	553, 935, 1031
HphI	GGTGA	1 cut(s)	91
Hpy166II	GTNNAC	1 cut(s)	1138
Hpy188I	TCNGA	5 cut(s)	149, 259, 562, 824, 1162
Hpy188III	TCNNGA	1 cut(s)	1099
Hpy8I	GTNNAC	1 cut(s)	1138
Hpy99I	CGWCG	2 cut(s)	341, 562
HpyAV	CCTTC	3 cut(s)	232, 895, 1076
HpyCH4III	ACNGT	3 cut(s)	158, 293, 1142
HpyCH4IV	ACGT	3 cut(s)	704, 992, 1199
HpyCH4V	TGCA	4 cut(s)	86, 1050, 1167, 1247
HpyF10VI	GCNNNNNNNGC	4 cut(s)	65, 537, 984, 1036
HpyF3I	CTNAG	2 cut(s)	168, 815
HpySE526I	ACGT	3 cut(s)	704, 992, 1199
Hsp92I	GRCGYC	1 cut(s)	557
Hsp92II	CATG	5 cut(s)	271, 442, 876, 1050, 1262
HspAI	GCGC	2 cut(s)	714, 1028
Kzo9I	GATC	2 cut(s)	1090, 1118
LguI	GCTCTTC	1 cut(s)	240
LmnI	GCTCC	6 cut(s)	185, 601, 877, 937, 948, 1014
Lsp1109I	GCAGC	2 cut(s)	150, 645
LweI	GCATC	2 cut(s)	645, 932
MaeI	CTAG	5 cut(s)	393, 528, 779, 783, 1288
MaeII	ACGT	3 cut(s)	704, 992, 1199
MaeIII	GTNAC	4 cut(s)	261, 461, 648, 700
MalI	GATC	2 cut(s)	1092, 1120
MboI	GATC	2 cut(s)	1090, 1118
MboII	GAAGA	3 cut(s)	166, 227, 1240
MlsI	TGGCCA	1 cut(s)	356
MluCI	AATT	5 cut(s)	119, 665, 791, 825, 1249
MluI	ACGCGT	1 cut(s)	251
MluNI	TGGCCA	1 cut(s)	356
MlyI	GAGTC	4 cut(s)	269, 446, 479, 899
MmeI	TCCRAC	3 cut(s)	540, 992, 1185
MnlI	CCTC	8 cut(s)	106, 177, 277, 356, 766, 824, 958, 1126
Mox20I	TGGCCA	1 cut(s)	356
MscI	TGGCCA	1 cut(s)	356
Msp20I	TGGCCA	1 cut(s)	356
MspI	CCGG	3 cut(s)	553, 935, 1031
MspR9I	CCNGG	3 cut(s)	554, 593, 863
MvaI	CCWGG	2 cut(s)	593, 863
MvnI	CGCG	1 cut(s)	253
MwoI	GCNNNNNNNGC	4 cut(s)	65, 537, 984, 1036
NciI	CCSGG	1 cut(s)	554
NdeII	GATC	2 cut(s)	1090, 1118
NheI	GCTAGC	1 cut(s)	527
NlaIII	CATG	5 cut(s)	271, 442, 876, 1050, 1262
NlaIV	GGNNCC	5 cut(s)	334, 344, 603, 802, 1278
NmuCI	GTSAC	3 cut(s)	261, 648, 700
NspI	RCATGY	1 cut(s)	1262
PciI	ACATGT	1 cut(s)	1258
PciSI	GCTCTTC	1 cut(s)	240
PcsI	WCGNNNNNNNCGW	1 cut(s)	345
PfeI	GAWTC	1 cut(s)	869
PkrI	GCNGC	2 cut(s)	165, 635
PleI	GAGTC	4 cut(s)	268, 446, 479, 899
PpsI	GAGTC	4 cut(s)	268, 446, 479, 899
PscI	ACATGT	1 cut(s)	1258
Psp6I	CCWGG	2 cut(s)	591, 861
PspGI	CCWGG	2 cut(s)	591, 861
PspN4I	GGNNCC	5 cut(s)	334, 344, 603, 802, 1278
PspPI	GGNCC	4 cut(s)	125, 333, 442, 581
RsaI	GTAC	1 cut(s)	623
RsaNI	GTAC	1 cut(s)	622
SalI	GTCGAC	1 cut(s)	1136
SapI	GCTCTTC	1 cut(s)	240
SatI	GCNGC	2 cut(s)	164, 634
Sau3AI	GATC	2 cut(s)	1090, 1118
Sau96I	GGNCC	4 cut(s)	125, 333, 442, 581
SchI	GAGTC	4 cut(s)	269, 446, 479, 899
ScrFI	CCNGG	3 cut(s)	554, 593, 863
SfaNI	GCATC	2 cut(s)	645, 932
SinI	GGWCC	3 cut(s)	333, 442, 581
SmlI	CTYRAG	4 cut(s)	69, 75, 454, 1099
SmoI	CTYRAG	4 cut(s)	69, 75, 454, 1099
Sse9I	AATT	5 cut(s)	119, 665, 791, 825, 1249
SsiI	CCGC	2 cut(s)	531, 945
SspMI	CTAG	5 cut(s)	393, 528, 779, 783, 1288
StyD4I	CCNGG	3 cut(s)	552, 591, 861
TaaI	ACNGT	3 cut(s)	158, 293, 1142
TaiI	ACGT	3 cut(s)	707, 995, 1202
TaqI	TCGA	3 cut(s)	138, 897, 1137
TaqII	GACCGA	1 cut(s)	350
TasI	AATT	5 cut(s)	119, 665, 791, 825, 1249
TatI	WGTACW	1 cut(s)	621
TfiI	GAWTC	1 cut(s)	869
TscAI	CASTG	4 cut(s)	436, 657, 724, 980
TseFI	GTSAC	3 cut(s)	261, 648, 700
TseI	GCWGC	2 cut(s)	163, 633
Tsp45I	GTSAC	3 cut(s)	261, 648, 700
TspDTI	ATGAA	5 cut(s)	52, 105, 861, 1035, 1258
TspGWI	ACGGA	1 cut(s)	1014
TspRI	CASTG	4 cut(s)	436, 657, 724, 980
VpaK11BI	GGWCC	3 cut(s)	333, 442, 581
XapI	RAATTY	3 cut(s)	119, 791, 1249
XceI	RCATGY	1 cut(s)	1262
XcmI	CCANNNNNNNNNTGG	2 cut(s)	325, 436
XmiI	GTMKAC	1 cut(s)	1137
XspI	CTAG	5 cut(s)	393, 528, 779, 783, 1288

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.