AT1G78850

Epidermis-specific secreted glycoprotein EP1-like

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Reverse (-)
29641860 .. 29643535
1676 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G78850.1

Sequence Viewer

Length: 1326 bp
ATGAAATTTTCAATCACATTAGCTCTATGCTTCACTCTCTCCATCTTCTTGATCGGATCACAAGCCAAAGTTCCAGTCGACGACCAATTCCGAGTGGTCAACGAAGGTGGCTACACCGATTACAGTCCCATCGAATACAACCCCGACGTACGTGGCTTCGTACCCTTCAGTGACAACTTCCGTCTCTGTTTCTACAACACAACCCCAAACGCATACACTCTCGCTCTCAGAATCGGAAACAGAGTCCAAGAATCCACTCTCAGATGGGTCTGGGAAGCAAACAGAGGCTCACCGGTCAAAGAAAACGCGACGTTGACTTTTGGCGAAGACGGAAACCTCGTACTCGCTGAAGCCGATGGACGCTTGGTATGGCAAACGAACACAGCTAACAAAGGCGCCGTGGGGATCAAAATCTTGGAGAATGGCAATATGGTAATATACGATTCCAGTGGAAAATTTGTATGGCAGAGCTTTGATTCTCCCACCGACACACTTCTCGTTGGACAGTCTTTGAAACTCAACGGTCGGACCAAACTCGTAAGCAGACTGTCTCCATCTGTCAACACAAACGGACCGTACAGTCTCGTGATGGAAGCCAAGAAGCTAGTCTTGTACTACACGACAAACAAAACTCCGAAACCAATCGCTTATTTTGAATACGAATTCTTCACCAAGATAACACAATTCCAGTCAATGACGTTCCAAGCTGTGGAAGATTCCGACACAACGTGGGGTCTAGTCATGGAAGGTGTCGATTCTGGTTCTAAATTCAACGTTTCAACGTTCCTCTCACGGCCGAAACACAACGCGACGTTGAGTTTTATTCGGTTAGAATCAGACGGAAACATCAGAGTTTGGAGTTACAGTACGTTGGCGACTTCCACGGCTTGGGACGTGACATACACGGCGTTTACCAACGCCGACACTGACGGTAACGACGAGTGTAGGATCCCTGAGCATTGTTTGGGGTTTGGTTTGTGTAAGAAAGGCCAGTGTAACGCTTGTCCTAGCGACAAAGGGCTTCTTGGTTGGGACGAGACATGTAAATCTCCAAGTCTCGCAAGTTGCGATCCCAAGACATTTCACTACTTCAAGATCGAAGGAGCTGATAGTTTCATGACAAAATATAACGGTGGATCATCGACGACGGAGAGTGCGTGTGGGGACAAGTGTACGAGAGATTGCAAATGTTTAGGGTTTTTCTACAATAGAAAGAGTTCGAGGTGTTGGTTGGGCTACGAGCTCAAGACATTGACTAGAACCGGAGATTCTTCCCTGGTTGCTTATGTCAAAGCTCCTAATGCAAACAAAAAGTCAACTCTTTGA

Protein Analysis

441

Amino Acids

49.05

Weight (kDa)

7.82

Isoelectric Point (pI)

36.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 90 - 183 3.7e-21 D-mannose binding lectin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 579
AccB1I GGYRCC 1 cut(s) 395
AccB7I CCANNNNNTGG 2 cut(s) 709, 888
AccI GTMKAC 1 cut(s) 78
AccII CGCG 2 cut(s) 308, 809
AclI AACGTT 2 cut(s) 774, 782
AclWI GGATC 6 cut(s) 64, 413, 943, 956, 1064, 1144
AcoI YGGCCR 1 cut(s) 794
AcsI RAATTY 4 cut(s) 5, 455, 662, 767
AcuI CTGAAG 2 cut(s) 151, 369
AcyI GRCGYC 1 cut(s) 396
AdeI CACNNNGTG 1 cut(s) 729
AfaI GTAC 7 cut(s) 150, 162, 342, 578, 614, 868, 1174
AfiI CCNNNNNNNGG 2 cut(s) 709, 888
AflIII ACRYGT 1 cut(s) 1040
AgeI ACCGGT 1 cut(s) 292
AgsI TTSAA 6 cut(s) 12, 514, 656, 772, 780, 1093
AjiI CACGTC 1 cut(s) 895
AjnI CCWGG 1 cut(s) 1275
AluBI AGCT 8 cut(s) 23, 386, 471, 604, 707, 1106, 1243, 1295
AluI AGCT 8 cut(s) 23, 386, 471, 604, 707, 1106, 1243, 1295
Alw21I GWGCWC 1 cut(s) 1245
Alw26I GTCTC 5 cut(s) 188, 555, 587, 1031, 1061
AlwI GGATC 6 cut(s) 64, 413, 943, 956, 1064, 1144
AoxI GGCC 2 cut(s) 794, 988
ApoI RAATTY 4 cut(s) 5, 455, 662, 767
ArsI GACNNNNNNTTYG 3 cut(s) 60, 92, 1298
AsiGI ACCGGT 1 cut(s) 292
Asp700I GAANNNNTTC 1 cut(s) 1216
AspLEI GCGC 1 cut(s) 398
AspS9I GGNCC 2 cut(s) 528, 572
AsuHPI GGTGA 2 cut(s) 282, 661
AvaII GGWCC 2 cut(s) 528, 572
BamHI GGATCC 1 cut(s) 948
BanI GGYRCC 1 cut(s) 395
BanII GRGCYC 1 cut(s) 1245
BauI CACGAG 1 cut(s) 584
BbsI GAAGAC 1 cut(s) 333
Bbv12I GWGCWC 1 cut(s) 1245
BccI CCATC 6 cut(s) 50, 137, 258, 350, 562, 583
BceAI ACGGC 4 cut(s) 383, 809, 900, 921
BciT130I CCWGG 1 cut(s) 1277
BcoDI GTCTC 5 cut(s) 188, 555, 587, 1031, 1061
BfaI CTAG 4 cut(s) 605, 737, 1008, 1257
BfoI RGCGCY 1 cut(s) 399
Bme1390I CCNGG 1 cut(s) 1277
Bme18I GGWCC 2 cut(s) 528, 572
BmgBI CACGTC 1 cut(s) 895
BmgT120I GGNCC 2 cut(s) 528, 572
BmiI GGNNCC 2 cut(s) 397, 950
BmrFI CCNGG 1 cut(s) 1277
BpiI GAAGAC 1 cut(s) 333
Bpu10I CCTNAGC 1 cut(s) 954
BpuEI CTTGAG 1 cut(s) 1229
BsaAI YACGTR 1 cut(s) 152
BsaBI GATNNNNATC 1 cut(s) 410
BsaHI GRCGYC 1 cut(s) 396
BsaJI CCNNGG 3 cut(s) 399, 882, 1275
BsaWI WCCGGW 2 cut(s) 292, 1262
BsaXI ACNNNNNCTCC 4 cut(s) 850, 880, 1142, 1172
Bsc4I CCNNNNNNNGG 2 cut(s) 709, 888
Bse118I RCCGGY 1 cut(s) 292
Bse1I ACTGG 4 cut(s) 74, 447, 688, 991
Bse8I GATNNNNATC 1 cut(s) 410
BseBI CCWGG 1 cut(s) 1277
BseDI CCNNGG 3 cut(s) 399, 882, 1275
BseJI GATNNNNATC 1 cut(s) 410
BseLI CCNNNNNNNGG 2 cut(s) 709, 888
BseMII CTCAG 3 cut(s) 241, 274, 945
BseNI ACTGG 4 cut(s) 74, 447, 688, 991
BseX3I CGGCCG 1 cut(s) 794
Bsh1236I CGCG 2 cut(s) 308, 809
Bsh1285I CGRYCG 2 cut(s) 526, 797
BshFI GGCC 2 cut(s) 796, 990
BshNI GGYRCC 1 cut(s) 395
BshTI ACCGGT 1 cut(s) 292
BsiEI CGRYCG 2 cut(s) 526, 797
BsiHKAI GWGCWC 1 cut(s) 1245
BsiSI CCGG 2 cut(s) 293, 1263
BsiWI CGTACG 1 cut(s) 148
BslFI GGGAC 4 cut(s) 111, 905, 1046, 1178
BslI CCNNNNNNNGG 2 cut(s) 709, 888
BsmAI GTCTC 5 cut(s) 188, 555, 587, 1031, 1061
BsmBI CGTCTC 1 cut(s) 188
BsmFI GGGAC 4 cut(s) 111, 905, 1046, 1178
BsnI GGCC 2 cut(s) 796, 990
Bsp1286I GDGCHC 1 cut(s) 1245
Bsp143I GATC 7 cut(s) 51, 56, 405, 948, 1069, 1095, 1136
BspANI GGCC 2 cut(s) 796, 990
BspCNI CTCAG 3 cut(s) 240, 273, 946
BspFNI CGCG 2 cut(s) 308, 809
BspHI TCATGA 1 cut(s) 1116
BspLI GGNNCC 2 cut(s) 397, 950
BspPI GGATC 6 cut(s) 64, 413, 943, 956, 1064, 1144
BspT107I GGYRCC 1 cut(s) 395
BsrFI RCCGGY 1 cut(s) 292
BsrI ACTGG 4 cut(s) 74, 447, 688, 991
BssAI RCCGGY 1 cut(s) 292
BssECI CCNNGG 3 cut(s) 399, 882, 1275
BssMI GATC 7 cut(s) 51, 56, 405, 948, 1069, 1095, 1136
BssNI GRCGYC 1 cut(s) 396
BssSI CACGAG 1 cut(s) 584
Bst2BI CACGAG 1 cut(s) 584
Bst2UI CCWGG 1 cut(s) 1277
Bst4CI ACNGT 9 cut(s) 125, 507, 524, 549, 576, 581, 866, 932, 1133
BstACI GRCGYC 1 cut(s) 396
BstBAI YACGTR 1 cut(s) 152
BstDEI CTNAG 3 cut(s) 227, 260, 954
BstDSI CCRYGG 2 cut(s) 399, 882
BstFNI CGCG 2 cut(s) 308, 809
BstH2I RGCGCY 1 cut(s) 399
BstHHI GCGC 1 cut(s) 398
BstKTI GATC 7 cut(s) 54, 59, 408, 951, 1072, 1098, 1139
BstMAI GTCTC 5 cut(s) 188, 555, 587, 1031, 1061
BstMBI GATC 7 cut(s) 51, 56, 405, 948, 1069, 1095, 1136
BstMCI CGRYCG 2 cut(s) 526, 797
BstMWI GCNNNNNNNGC 1 cut(s) 1301
BstNI CCWGG 1 cut(s) 1277
BstNSI RCATGY 1 cut(s) 1044
BstSCI CCNGG 1 cut(s) 1275
BstUI CGCG 2 cut(s) 308, 809
BstV2I GAAGAC 1 cut(s) 333
BstX2I RGATCY 1 cut(s) 948
BstYI RGATCY 1 cut(s) 948
BstZI CGGCCG 1 cut(s) 794
BsuRI GGCC 2 cut(s) 796, 990
BtgI CCRYGG 2 cut(s) 399, 882
BtrI CACGTC 1 cut(s) 895
BtsIMutI CAGTG 4 cut(s) 175, 454, 924, 998
CciI TCATGA 1 cut(s) 1116
CfoI GCGC 1 cut(s) 398
Cfr10I RCCGGY 1 cut(s) 292
Cfr13I GGNCC 2 cut(s) 528, 572
CpoI CGGWCCG 1 cut(s) 572
CseI GACGC 1 cut(s) 369
Csp6I GTAC 7 cut(s) 149, 161, 341, 577, 613, 867, 1173
CspAI ACCGGT 1 cut(s) 292
CspCI CAANNNNNGTGG 2 cut(s) 88, 123
CspI CGGWCCG 1 cut(s) 572
CviAII CATG 3 cut(s) 742, 1041, 1117
CviQI GTAC 7 cut(s) 149, 161, 341, 577, 613, 867, 1173
DdeI CTNAG 3 cut(s) 227, 260, 954
DinI GGCGCC 1 cut(s) 397
DpnI GATC 7 cut(s) 53, 58, 407, 950, 1071, 1097, 1138
DpnII GATC 7 cut(s) 51, 56, 405, 948, 1069, 1095, 1136
DraIII CACNNNGTG 1 cut(s) 729
DrdI GACNNNNNNGTC 1 cut(s) 579
DseDI GACNNNNNNGTC 1 cut(s) 579
EaeI YGGCCR 1 cut(s) 794
EagI CGGCCG 1 cut(s) 794
Ecl136II GAGCTC 1 cut(s) 1243
EclXI CGGCCG 1 cut(s) 794
Eco24I GRGCYC 1 cut(s) 1245
Eco47I GGWCC 2 cut(s) 528, 572
Eco52I CGGCCG 1 cut(s) 794
Eco53kI GAGCTC 1 cut(s) 1243
Eco57I CTGAAG 2 cut(s) 151, 369
EcoICRI GAGCTC 1 cut(s) 1243
EcoRI GAATTC 1 cut(s) 662
EcoRII CCWGG 1 cut(s) 1275
EcoT38I GRGCYC 1 cut(s) 1245
EgeI GGCGCC 1 cut(s) 397
EheI GGCGCC 1 cut(s) 397
Esp3I CGTCTC 1 cut(s) 188
FaeI CATG 3 cut(s) 745, 1044, 1120
FalI AAGNNNNNCTT 4 cut(s) 593, 625, 1008, 1040
FaqI GGGAC 4 cut(s) 111, 905, 1046, 1178
FatI CATG 3 cut(s) 741, 1040, 1116
FblI GTMKAC 1 cut(s) 78
FriOI GRGCYC 1 cut(s) 1245
FspBI CTAG 4 cut(s) 605, 737, 1008, 1257
GlaI GCGC 1 cut(s) 397
HaeII RGCGCY 1 cut(s) 399
HaeIII GGCC 2 cut(s) 796, 990
HapII CCGG 2 cut(s) 293, 1263
HgaI GACGC 1 cut(s) 369
HhaI GCGC 1 cut(s) 398
Hin1I GRCGYC 1 cut(s) 396
Hin1II CATG 3 cut(s) 745, 1044, 1120
Hin6I GCGC 1 cut(s) 396
HinP1I GCGC 1 cut(s) 396
HincII GTYRAC 5 cut(s) 79, 100, 315, 562, 1317
HindII GTYRAC 5 cut(s) 79, 100, 315, 562, 1317
HinfI GANTC 9 cut(s) 231, 243, 251, 443, 476, 716, 755, 833, 1268
HpaII CCGG 2 cut(s) 293, 1263
HphI GGTGA 2 cut(s) 282, 661
Hpy166II GTNNAC 7 cut(s) 79, 100, 315, 562, 912, 1173, 1317
Hpy188III TCNNGA 5 cut(s) 49, 586, 1093, 1117, 1246
Hpy8I GTNNAC 7 cut(s) 79, 100, 315, 562, 912, 1173, 1317
Hpy99I CGWCG 7 cut(s) 83, 149, 313, 814, 941, 1147, 1150
HpyAV CCTTC 4 cut(s) 98, 175, 740, 1094
HpyCH4III ACNGT 9 cut(s) 125, 507, 524, 549, 576, 581, 866, 932, 1133
HpyCH4V TGCA 2 cut(s) 1185, 1304
HpyF10VI GCNNNNNNNGC 1 cut(s) 1301
HpyF3I CTNAG 3 cut(s) 227, 260, 954
Hsp92I GRCGYC 1 cut(s) 396
Hsp92II CATG 3 cut(s) 745, 1044, 1120
HspAI GCGC 1 cut(s) 396
KasI GGCGCC 1 cut(s) 395
Kzo9I GATC 7 cut(s) 51, 56, 405, 948, 1069, 1095, 1136
LmnI GCTCC 2 cut(s) 1103, 1300
MaeI CTAG 4 cut(s) 605, 737, 1008, 1257
MaeIII GTNAC 5 cut(s) 170, 860, 895, 932, 995
MalI GATC 7 cut(s) 53, 58, 407, 950, 1071, 1097, 1138
MboI GATC 7 cut(s) 51, 56, 405, 948, 1069, 1095, 1136
MboII GAAGA 5 cut(s) 37, 338, 658, 725, 1263
MflI RGATCY 1 cut(s) 948
MhlI GDGCHC 1 cut(s) 1245
MluCI AATT 6 cut(s) 5, 86, 455, 662, 683, 767
Mly113I GGCGCC 1 cut(s) 396
MlyI GAGTC 1 cut(s) 252
MmeI TCCRAC 3 cut(s) 481, 506, 744
MnlI CCTC 4 cut(s) 278, 347, 797, 1215
MroXI GAANNNNTTC 1 cut(s) 1216
MspI CCGG 2 cut(s) 293, 1263
MspR9I CCNGG 1 cut(s) 1277
MvaI CCWGG 1 cut(s) 1277
MvnI CGCG 2 cut(s) 308, 809
MwoI GCNNNNNNNGC 1 cut(s) 1301
NarI GGCGCC 1 cut(s) 396
NdeII GATC 7 cut(s) 51, 56, 405, 948, 1069, 1095, 1136
NlaIII CATG 3 cut(s) 745, 1044, 1120
NlaIV GGNNCC 2 cut(s) 397, 950
NmuCI GTSAC 2 cut(s) 170, 895
NspI RCATGY 1 cut(s) 1044
PagI TCATGA 1 cut(s) 1116
PciI ACATGT 1 cut(s) 1040
PcsI WCGNNNNNNNCGW 5 cut(s) 336, 351, 936, 1065, 1154
PdmI GAANNNNTTC 1 cut(s) 1216
PfeI GAWTC 8 cut(s) 231, 251, 443, 476, 716, 755, 833, 1268
Pfl23II CGTACG 1 cut(s) 148
PflMI CCANNNNNTGG 2 cut(s) 709, 888
PinAI ACCGGT 1 cut(s) 292
PleI GAGTC 1 cut(s) 251
PluTI GGCGCC 1 cut(s) 399
PpsI GAGTC 1 cut(s) 251
Ppu21I YACGTR 1 cut(s) 152
PscI ACATGT 1 cut(s) 1040
Psp124BI GAGCTC 1 cut(s) 1245
Psp1406I AACGTT 2 cut(s) 774, 782
Psp6I CCWGG 1 cut(s) 1275
PspGI CCWGG 1 cut(s) 1275
PspLI CGTACG 1 cut(s) 148
PspN4I GGNNCC 2 cut(s) 397, 950
PspPI GGNCC 2 cut(s) 528, 572
PsuI RGATCY 1 cut(s) 948
RsaI GTAC 7 cut(s) 150, 162, 342, 578, 614, 868, 1174
RsaNI GTAC 7 cut(s) 149, 161, 341, 577, 613, 867, 1173
Rsr2I CGGWCCG 1 cut(s) 572
RsrII CGGWCCG 1 cut(s) 572
SacI GAGCTC 1 cut(s) 1245
SalI GTCGAC 1 cut(s) 77
Sau3AI GATC 7 cut(s) 51, 56, 405, 948, 1069, 1095, 1136
Sau96I GGNCC 2 cut(s) 528, 572
SchI GAGTC 1 cut(s) 252
ScrFI CCNGG 1 cut(s) 1277
SduI GDGCHC 1 cut(s) 1245
SfoI GGCGCC 1 cut(s) 397
SinI GGWCC 2 cut(s) 528, 572
SmlI CTYRAG 1 cut(s) 1244
SmoI CTYRAG 1 cut(s) 1244
Sse9I AATT 6 cut(s) 5, 86, 455, 662, 683, 767
SspDI GGCGCC 1 cut(s) 395
SspMI CTAG 4 cut(s) 605, 737, 1008, 1257
SstI GAGCTC 1 cut(s) 1245
StyD4I CCNGG 1 cut(s) 1275
TaaI ACNGT 9 cut(s) 125, 507, 524, 549, 576, 581, 866, 932, 1133
TaqI TCGA 6 cut(s) 78, 132, 753, 1098, 1142, 1220
TasI AATT 6 cut(s) 5, 86, 455, 662, 683, 767
TatI WGTACW 1 cut(s) 612
TfiI GAWTC 8 cut(s) 231, 251, 443, 476, 716, 755, 833, 1268
TscAI CASTG 4 cut(s) 175, 454, 931, 998
TseFI GTSAC 2 cut(s) 170, 895
Tsp45I GTSAC 2 cut(s) 170, 895
TspDTI ATGAA 2 cut(s) 17, 1105
TspGWI ACGGA 5 cut(s) 170, 345, 585, 855, 1163
TspRI CASTG 4 cut(s) 175, 454, 931, 998
Van91I CCANNNNNTGG 2 cut(s) 709, 888
VpaK11BI GGWCC 2 cut(s) 528, 572
XapI RAATTY 4 cut(s) 5, 455, 662, 767
XceI RCATGY 1 cut(s) 1044
XmiI GTMKAC 1 cut(s) 78
XmnI GAANNNNTTC 1 cut(s) 1216
XspI CTAG 4 cut(s) 605, 737, 1008, 1257
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.