Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0001062

Physical Location & Seq

Genomic Coordinates Reverse (-)

37756958 .. 37758280

Gene Structure 1323 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1262600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1323 bp

ATGTCTTCCCCTTCACTAACCGTGTCACTGTCCTCCATTGTCATTATCTCGCTCTTTGCCTTCATTGCTCAAGCCCAAGTTCCAGCAAATGAAACTTTCAAGTTTGTCAACGAAGGAGAATATTGGCCAAATATTGTAGAATATGATGCAAGCTATCGCATGCTTTCTCTCTTTGCCTCCCCCTTCCAATTCGCTTTCTACAACACCACCCCAGATGCCTTCACTCTTGCTCTACGCATGGGTTTGAGGAGGTCGGAGTCGGGGTTTTATTGGGTTTGGGAGGCCAATCGGGGAAAACCGGTCGGCCAAAACGCCACCTTCGCATTTGGGACTGATGGGAACCTGGCCTTGGCCGATGCCGATGGCCAAGTGGCTTGGCAAAGCAACACCGCCAACAAAGGTGTGGTAGGCTTCAAGTTGCTTTCAACTGGCAATATTGTACTTTATGACTCAAAGGGTAACTTTGTTTGGCAAAGTTTTCACCACCCATCAGACACTTTGTTAGTGGGTCAATCTCTGCGTGCCGGGGGAGTAAGCAAGCTTGTGAGTCGGGCCTCGGAGGTAGAAAACAAAGACGGGTCTTATAGCTTGGTGATGGAGCCGAAAGGTTTGTCTTTGTACTACAAGAGCAAGAACTCACCAAGACCATTACTCTACTTCACATCCTCCAAATGGATCAATGTTCAAAAGGGCTCACTGAACCATGTGACACTGAAAGCTTCGCCGGACACTCATGAGGGTTTTGCTTACGACTTGAGCTTGGACTACGTTGAGGGAAACTCCTCCACCGGCGGAAATGTCCTTCTTGCTAGACCCAAATACAATAGCACATCAACATTCCTTAGGCTGGAAATTAATGGAAATTTGAGGCTTCACACTTACTATAGGATACTACGTTACGGTGCATGGGAGGTGACCTTCAGTCTTTTCGATAAAACTTCAAAATGGGAAAGCGAGTGCCAATTGCCGGAGCGATGTGGGAAGTTCGGCATTTGTGAGGACAGCCAATGTGTTGCTTGCCCATCTTCTAAGGGACTATTGGGTTGGAGCGAGACTTGTGAGCCTGAGAAGCTAACTTCTTGTGATCCAAAGAGCTTCCACTACTACAAAGTTGAAGGGGTTGATCATTTCTTGAGCAAGTACACAAAGGGGGACTCAATCAAAGAGAGTGATTGTGCTAAGAAGTGTACATTGGATTGCAAATGTTTGGGCTACTTCTACAACCAAGATACATCAAAGTGTTGGATTGCTTATGATTTGAAAACCCTAACTAAAGTTGCTAATTCCACTCATGTAGGTTACATCAAAGCACCTAACCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005829 GO:0006810 GO:0006833 GO:0008150 GO:0009505 GO:0012505 GO:0016020 GO:0030312 GO:0031090 GO:0042044 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0051179 GO:0051234 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin PAN_2 S_locus_glycop

Protein Analysis

441

Amino Acids

49.1

Weight (kDa)

8.13

Isoelectric Point (pI)

39.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B_lectin	PF01453	92 - 175	1.7e-17	D-mannose binding lectin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001062)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78850 AT1G78860
fragaria_vesca	FvH4_3g18371 FvH4_3g18380 FvH4_3g18383 FvH4_3g18410
malus_domestica	MD03G1242400.v1.1 MD11G1262100.v1.1 MD11G1262300.v1.1 MD11G1262400.v1.1 MD11G1262600.v1.1
prunus_persica	Prupe.4G165600_v2.0.a1 Prupe.4G166000_v2.0.a1 Prupe.4G166100_v2.0.a1 Prupe.4G166200_v2.0.a1
pyrus_communis	pycom11g23110 pycom11g23150
rosa_chinensis	RchiOBHm_Chr5g0031021 RchiOBHm_Chr5g0031031 RchiOBHm_Chr5g0031081 RchiOBHm_Chr5g0031091 RchiOBHm_Chr5g0031131 RchiOBHm_Chr5g0031141
rosa_laevigata	RLG00000033282 RLG00000033283 RLG00000033284 RLG00000033285
rosa_multiflora	Rmu_co8472871.1_g000001 Rmu_co8500049.1_g000001 Rmu_sc0001523.1_g000001 Rmu_sc0005489.1_g000008 Rmu_sc0020175.1_g000004 Rmu_sc0023422.1_g000001 Rmu_sc0023423.1_g000001
rosa_roxburghii	Rroxscaffold_1G00049150 Rroxscaffold_1G00049170 Rroxscaffold_1G00049190 Rroxscaffold_1G00049200 Rroxscaffold_1G00049210 Rroxscaffold_1G00049240
rosa_rugosa	Rorug05G0122300 Rorug05G0122400 Rorug05G0122500
rosa_samantha	Rh5AG215600 Rh5AG215700 Rh5AG216000 Rh5BG214800 Rh5BG214900 Rh5BG215000 Rh5BG215500 Rh5CG238900 Rh5DG219300 Rh5DG219400 Rh5DG219600 Rh5DG219900 Rh5DG220100
rosa_wichuraiana	Rw5G019730 Rw5G019740 Rw5G019750 Rw5G019760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	390, 792
AclWI	GGATC	2 cut(s)	683, 1079
AcoI	YGGCCR	4 cut(s)	125, 304, 351, 364
AcsI	RAATTY	1 cut(s)	862
AcuI	CTGAAG	1 cut(s)	904
AfaI	GTAC	4 cut(s)	441, 620, 1142, 1189
AfiI	CCNNNNNNNGG	4 cut(s)	349, 672, 847, 967
AgeI	ACCGGT	1 cut(s)	298
AgsI	TTSAA	7 cut(s)	100, 415, 426, 686, 942, 1115, 1261
AhdI	GACNNNNNGTC	1 cut(s)	921
AjnI	CCWGG	1 cut(s)	342
AjuI	GAANNNNNNNTTGG	4 cut(s)	332, 364, 1175, 1207
AluBI	AGCT	7 cut(s)	153, 541, 588, 719, 759, 1072, 1095
AluI	AGCT	7 cut(s)	153, 541, 588, 719, 759, 1072, 1095
Alw26I	GTCTC	1 cut(s)	1046
AlwI	GGATC	2 cut(s)	683, 1079
AoxI	GGCC	7 cut(s)	125, 282, 304, 345, 351, 364, 552
ApoI	RAATTY	1 cut(s)	862
ArsI	GACNNNNNNTTYG	2 cut(s)	596, 628
AseI	ATTAAT	1 cut(s)	855
AsiGI	ACCGGT	1 cut(s)	298
AspS9I	GGNCC	1 cut(s)	552
AsuC2I	CCSGG	1 cut(s)	526
AsuHPI	GGTGA	4 cut(s)	473, 604, 630, 925
AxyI	CCTNAGG	1 cut(s)	842
BalI	TGGCCA	2 cut(s)	127, 366
BanII	GRGCYC	1 cut(s)	695
BccI	CCATC	5 cut(s)	329, 356, 496, 589, 1030
BciT130I	CCWGG	1 cut(s)	344
BciVI	GTATCC	1 cut(s)	882
BclI	TGATCA	1 cut(s)	1123
BcnI	CCSGG	1 cut(s)	526
BcoDI	GTCTC	1 cut(s)	1046
BfaI	CTAG	2 cut(s)	810, 1321
BfmI	CTRYAG	1 cut(s)	883
BfuI	GTATCC	1 cut(s)	882
Bme1390I	CCNGG	2 cut(s)	344, 526
BmeRI	GACNNNNNGTC	1 cut(s)	921
BmgT120I	GGNCC	1 cut(s)	552
BmiI	GGNNCC	2 cut(s)	341, 600
BmrFI	CCNGG	2 cut(s)	344, 526
BmsI	GCATC	3 cut(s)	136, 205, 346
BplI	GAGNNNNNCTC	2 cut(s)	764, 796
BpuEI	CTTGAG	3 cut(s)	54, 775, 1153
BpuMI	CCSGG	1 cut(s)	526
BsaJI	CCNNGG	3 cut(s)	348, 525, 555
BsaWI	WCCGGW	1 cut(s)	298
BsaXI	ACNNNNNCTCC	2 cut(s)	248, 278
Bsc4I	CCNNNNNNNGG	4 cut(s)	349, 672, 847, 967
Bse118I	RCCGGY	2 cut(s)	298, 788
Bse1I	ACTGG	1 cut(s)	433
Bse21I	CCTNAGG	1 cut(s)	842
Bse3DI	GCAATG	1 cut(s)	63
BseBI	CCWGG	1 cut(s)	344
BseDI	CCNNGG	3 cut(s)	348, 525, 555
BseGI	GGATG	1 cut(s)	662
BseLI	CCNNNNNNNGG	4 cut(s)	349, 672, 847, 967
BseMI	GCAATG	1 cut(s)	63
BseMII	CTCAG	1 cut(s)	1056
BseNI	ACTGG	1 cut(s)	433
BseRI	GAGGAG	2 cut(s)	262, 772
Bsh1285I	CGRYCG	1 cut(s)	303
BshFI	GGCC	7 cut(s)	127, 284, 306, 347, 353, 366, 554
BshTI	ACCGGT	1 cut(s)	298
BsiEI	CGRYCG	1 cut(s)	303
BsiSI	CCGG	5 cut(s)	299, 525, 725, 789, 968
BslFI	GGGAC	3 cut(s)	343, 1047, 1166
BslI	CCNNNNNNNGG	4 cut(s)	349, 672, 847, 967
BsmAI	GTCTC	1 cut(s)	1046
BsmFI	GGGAC	3 cut(s)	343, 1047, 1166
BsnI	GGCC	7 cut(s)	127, 284, 306, 347, 353, 366, 554
Bsp1286I	GDGCHC	1 cut(s)	695
Bsp1407I	TGTACA	1 cut(s)	1187
Bsp143I	GATC	3 cut(s)	675, 1084, 1123
BspACI	CCGC	2 cut(s)	390, 792
BspANI	GGCC	7 cut(s)	127, 284, 306, 347, 353, 366, 554
BspCNI	CTCAG	1 cut(s)	1057
BspHI	TCATGA	1 cut(s)	733
BspLI	GGNNCC	2 cut(s)	341, 600
BspPI	GGATC	2 cut(s)	683, 1079
BsrDI	GCAATG	1 cut(s)	63
BsrFI	RCCGGY	2 cut(s)	298, 788
BsrGI	TGTACA	1 cut(s)	1187
BsrI	ACTGG	1 cut(s)	433
BssAI	RCCGGY	2 cut(s)	298, 788
BssECI	CCNNGG	3 cut(s)	348, 525, 555
BssMI	GATC	3 cut(s)	675, 1084, 1123
BssT1I	CCWWGG	1 cut(s)	348
Bst2UI	CCWGG	1 cut(s)	344
Bst4CI	ACNGT	3 cut(s)	22, 30, 902
BstAUI	TGTACA	1 cut(s)	1187
BstC8I	GCNNGC	5 cut(s)	151, 161, 522, 539, 1018
BstDEI	CTNAG	4 cut(s)	842, 1029, 1065, 1179
BstEII	GGTNACC	1 cut(s)	913
BstF5I	GGATG	1 cut(s)	662
BstKTI	GATC	3 cut(s)	678, 1087, 1126
BstMAI	GTCTC	1 cut(s)	1046
BstMBI	GATC	3 cut(s)	675, 1084, 1123
BstMCI	CGRYCG	1 cut(s)	303
BstMWI	GCNNNNNNNGC	3 cut(s)	65, 320, 1069
BstNI	CCWGG	1 cut(s)	344
BstNSI	RCATGY	1 cut(s)	163
BstPI	GGTNACC	1 cut(s)	913
BstSCI	CCNGG	2 cut(s)	342, 524
BstSFI	CTRYAG	1 cut(s)	883
Bsu36I	CCTNAGG	1 cut(s)	842
BsuI	GTATCC	1 cut(s)	882
BsuRI	GGCC	7 cut(s)	127, 284, 306, 347, 353, 366, 554
BtgZI	GCGATG	1 cut(s)	988
BtsCI	GGATG	1 cut(s)	662
BtsIMutI	CAGTG	3 cut(s)	26, 695, 710
Cac8I	GCNNGC	5 cut(s)	151, 161, 522, 539, 1018
CciI	TCATGA	1 cut(s)	733
Cfr10I	RCCGGY	2 cut(s)	298, 788
Cfr13I	GGNCC	1 cut(s)	552
Csp6I	GTAC	4 cut(s)	440, 619, 1141, 1188
CspAI	ACCGGT	1 cut(s)	298
CviAII	CATG	6 cut(s)	160, 238, 704, 734, 906, 1292
CviQI	GTAC	4 cut(s)	440, 619, 1141, 1188
DdeI	CTNAG	4 cut(s)	842, 1029, 1065, 1179
DpnI	GATC	3 cut(s)	677, 1086, 1125
DpnII	GATC	3 cut(s)	675, 1084, 1123
DriI	GACNNNNNGTC	1 cut(s)	921
EaeI	YGGCCR	4 cut(s)	125, 304, 351, 364
Eam1105I	GACNNNNNGTC	1 cut(s)	921
EciI	GGCGGA	1 cut(s)	807
Eco130I	CCWWGG	1 cut(s)	348
Eco24I	GRGCYC	1 cut(s)	695
Eco57I	CTGAAG	1 cut(s)	904
Eco81I	CCTNAGG	1 cut(s)	842
Eco91I	GGTNACC	1 cut(s)	913
EcoO65I	GGTNACC	1 cut(s)	913
EcoRII	CCWGG	1 cut(s)	342
EcoT14I	CCWWGG	1 cut(s)	348
EcoT38I	GRGCYC	1 cut(s)	695
ErhI	CCWWGG	1 cut(s)	348
FaeI	CATG	6 cut(s)	163, 241, 707, 737, 909, 1295
FalI	AAGNNNNNCTT	2 cut(s)	446, 478
FaqI	GGGAC	3 cut(s)	343, 1047, 1166
FatI	CATG	6 cut(s)	159, 237, 703, 733, 905, 1291
FbaI	TGATCA	1 cut(s)	1123
FokI	GGATG	1 cut(s)	649
FriOI	GRGCYC	1 cut(s)	695
FspBI	CTAG	2 cut(s)	810, 1321
HaeIII	GGCC	7 cut(s)	127, 284, 306, 347, 353, 366, 554
HapII	CCGG	5 cut(s)	299, 525, 725, 789, 968
Hin1II	CATG	6 cut(s)	163, 241, 707, 737, 909, 1295
HincII	GTYRAC	1 cut(s)	109
HindII	GTYRAC	1 cut(s)	109
HindIII	AAGCTT	2 cut(s)	539, 717
HinfI	GANTC	4 cut(s)	257, 449, 547, 1154
HpaII	CCGG	5 cut(s)	299, 525, 725, 789, 968
HphI	GGTGA	4 cut(s)	473, 604, 630, 925
Hpy166II	GTNNAC	3 cut(s)	109, 1143, 1188
Hpy188I	TCNGA	3 cut(s)	256, 493, 559
Hpy188III	TCNNGA	2 cut(s)	734, 1132
Hpy8I	GTNNAC	3 cut(s)	109, 1143, 1188
HpyAV	CCTTC	9 cut(s)	21, 70, 107, 193, 229, 328, 812, 928, 1109
HpyCH4III	ACNGT	3 cut(s)	22, 30, 902
HpyCH4IV	ACGT	2 cut(s)	768, 895
HpyCH4V	TGCA	3 cut(s)	149, 905, 1200
HpyF10VI	GCNNNNNNNGC	3 cut(s)	65, 320, 1069
HpyF3I	CTNAG	4 cut(s)	842, 1029, 1065, 1179
HpySE526I	ACGT	2 cut(s)	768, 895
Hsp92II	CATG	6 cut(s)	163, 241, 707, 737, 909, 1295
Ksp22I	TGATCA	1 cut(s)	1123
Kzo9I	GATC	3 cut(s)	675, 1084, 1123
LmnI	GCTCC	3 cut(s)	598, 970, 1047
LweI	GCATC	3 cut(s)	136, 205, 346
MaeI	CTAG	2 cut(s)	810, 1321
MaeII	ACGT	2 cut(s)	768, 895
MaeIII	GTNAC	6 cut(s)	24, 458, 706, 896, 913, 1298
MalI	GATC	3 cut(s)	677, 1086, 1125
MboI	GATC	3 cut(s)	675, 1084, 1123
MboII	GAAGA	1 cut(s)	1017
MfeI	CAATTG	1 cut(s)	962
MhlI	GDGCHC	1 cut(s)	695
MlsI	TGGCCA	2 cut(s)	127, 366
MluCI	AATT	5 cut(s)	188, 852, 862, 962, 1282
MluNI	TGGCCA	2 cut(s)	127, 366
MlyI	GAGTC	4 cut(s)	266, 443, 556, 1148
MmeI	TCCRAC	3 cut(s)	234, 1025, 1223
Mox20I	TGGCCA	2 cut(s)	127, 366
MscI	TGGCCA	2 cut(s)	127, 366
MseI	TTAA	1 cut(s)	855
MslI	CAYNNNNRTG	1 cut(s)	1237
Msp20I	TGGCCA	2 cut(s)	127, 366
MspI	CCGG	5 cut(s)	299, 525, 725, 789, 968
MspR9I	CCNGG	2 cut(s)	344, 526
MunI	CAATTG	1 cut(s)	962
MvaI	CCWGG	1 cut(s)	344
MwoI	GCNNNNNNNGC	3 cut(s)	65, 320, 1069
NciI	CCSGG	1 cut(s)	526
NdeII	GATC	3 cut(s)	675, 1084, 1123
NlaIII	CATG	6 cut(s)	163, 241, 707, 737, 909, 1295
NlaIV	GGNNCC	2 cut(s)	341, 600
NmuCI	GTSAC	3 cut(s)	24, 706, 913
NspI	RCATGY	1 cut(s)	163
PaeI	GCATGC	1 cut(s)	163
PagI	TCATGA	1 cut(s)	733
PinAI	ACCGGT	1 cut(s)	298
PleI	GAGTC	4 cut(s)	265, 443, 555, 1148
PpsI	GAGTC	4 cut(s)	265, 443, 555, 1148
PshBI	ATTAAT	1 cut(s)	855
Psp6I	CCWGG	1 cut(s)	342
PspEI	GGTNACC	1 cut(s)	913
PspGI	CCWGG	1 cut(s)	342
PspN4I	GGNNCC	2 cut(s)	341, 600
PspPI	GGNCC	1 cut(s)	552
RsaI	GTAC	4 cut(s)	441, 620, 1142, 1189
RsaNI	GTAC	4 cut(s)	440, 619, 1141, 1188
RseI	CAYNNNNRTG	1 cut(s)	1237
SaqAI	TTAA	1 cut(s)	855
Sau3AI	GATC	3 cut(s)	675, 1084, 1123
Sau96I	GGNCC	1 cut(s)	552
SchI	GAGTC	4 cut(s)	266, 443, 556, 1148
ScrFI	CCNGG	2 cut(s)	344, 526
SduI	GDGCHC	1 cut(s)	695
SfaNI	GCATC	3 cut(s)	136, 205, 346
SfcI	CTRYAG	1 cut(s)	883
SgrAI	CRCCGGYG	1 cut(s)	788
SmiMI	CAYNNNNRTG	1 cut(s)	1237
SmlI	CTYRAG	3 cut(s)	69, 754, 1132
SmoI	CTYRAG	3 cut(s)	69, 754, 1132
SphI	GCATGC	1 cut(s)	163
Sse9I	AATT	5 cut(s)	188, 852, 862, 962, 1282
SsiI	CCGC	2 cut(s)	390, 792
SspI	AATATT	3 cut(s)	122, 133, 436
SspMI	CTAG	2 cut(s)	810, 1321
StyD4I	CCNGG	2 cut(s)	342, 524
StyI	CCWWGG	1 cut(s)	348
TaaI	ACNGT	3 cut(s)	22, 30, 902
TaiI	ACGT	2 cut(s)	771, 898
TaqI	TCGA	1 cut(s)	930
TasI	AATT	5 cut(s)	188, 852, 862, 962, 1282
TatI	WGTACW	4 cut(s)	439, 618, 1140, 1187
Tru1I	TTAA	1 cut(s)	855
Tru9I	TTAA	1 cut(s)	855
TscAI	CASTG	3 cut(s)	33, 702, 717
TseFI	GTSAC	3 cut(s)	24, 706, 913
Tsp45I	GTSAC	3 cut(s)	24, 706, 913
TspDTI	ATGAA	2 cut(s)	52, 105
TspRI	CASTG	3 cut(s)	33, 702, 717
VspI	ATTAAT	1 cut(s)	855
XapI	RAATTY	1 cut(s)	862
XceI	RCATGY	1 cut(s)	163
XcmI	CCANNNNNNNNNTGG	1 cut(s)	400
XspI	CTAG	2 cut(s)	810, 1321

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.