Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0001062

Physical Location & Seq

Genomic Coordinates Forward (+)

25276143 .. 25277303

Gene Structure 1161 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000033284

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1161 bp

ATGCTTGATCTCTTTGCCTCACCTCATCAACTTGCCTTCTACAACACCACCCCAAATGCCTTCACCCTCGCTCTACGCATGGGCTTGCGCCGTTCGGAGTCTCTTTTCCGATGGGTTTGGGAGGCCAACCGAAGAAACCCGGTTGGCGAAAATGCCACACTCACTTTTGGGCAGGACGGAAACCTCGTCTTGGCCAATGCTGATGGTCGAGTGGCTTGGCAAACGAACACCGCGAACAAAGGTGTTGTAGGCCTCAGGTTGCTTTCAACCGGAAACATGGTCCTTCACAACTCGAAGGGTGATTTTGTTTGGGAAAGCTTCGACTACCCAACAGACACTTTGTTGGTGGGTCAATCTCTGAAGGCTGGAAAATTGAGCAAGCTCGTGATCCGGGCCTCGGACACAGAAAACAAAGATGGGGCATATAGCTTGGTGATGGAGTTGAAAGGATTGGTTTTATACTACCAGAGCAAGAACACACCGAAGCCGTTACTCTACTACAGATTCACCGAAAGGAACTTCAATGTAAAGAGTCCGATAGATCAAGTGATATTGCAGTGCGAGCCGACCACAGATGAGGGTTATGCATATGAGATTACTGTGCGGCATCTACTCAACAATTCTCAGGTAGGGGGAATCCTTCCGGTTAGGCCCAAATACAATAGCACATTGACATTCCTCAGGCTTGGAATCGATGGAAATATTAGGCTTTACACTTATAGTGACAAGGTAGACTGGGGTGCTTGGGAGACGACCTTCACTCTTTTCGACTCAGTTAACTACTGGTGGGAAGGCGAGTGCCAGTTGTCGGAGAAATGTAGGGGCTTTGGCCTTTGCGAGGACAACCAATGCGTTGCTTGCCCCTCATCGAAGGGACTATTAGGTTGGAGCAAGACTTGTGAGCCCGAGAAGCTTCCTTCCTGTGATGCAAAGAGCTTCCATTACTACAAACTTGATGGGATTGATCATTTCTTGAGCAAGTATACCAGTGGATCGGGTACAAAGGAGGACGATTGTGGTAGCAAGTGTACTTCGGATTGCAAGTGTTTGGGTTACTTTTACAATAGGGATTCATCAAGGTGTTGGTTAGCTTATGATTTGAAAACCTTGACCAACGTTGCCAATTCTATTCATGTGGCTTACATCAAGGCACCTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005829 GO:0006810 GO:0006833 GO:0008150 GO:0009505 GO:0012505 GO:0016020 GO:0030312 GO:0031090 GO:0042044 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0051179 GO:0051234 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin PAN_2 S_locus_glycop

Protein Analysis

387

Amino Acids

43.53

Weight (kDa)

7.45

Isoelectric Point (pI)

41.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B_lectin	PF01453	39 - 124	5.4e-20	D-mannose binding lectin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001062)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78850 AT1G78860
fragaria_vesca	FvH4_3g18371 FvH4_3g18380 FvH4_3g18383 FvH4_3g18410
malus_domestica	MD03G1242400.v1.1 MD11G1262100.v1.1 MD11G1262300.v1.1 MD11G1262400.v1.1 MD11G1262600.v1.1
prunus_persica	Prupe.4G165600_v2.0.a1 Prupe.4G166000_v2.0.a1 Prupe.4G166100_v2.0.a1 Prupe.4G166200_v2.0.a1
pyrus_communis	pycom11g23110 pycom11g23150
rosa_chinensis	RchiOBHm_Chr5g0031021 RchiOBHm_Chr5g0031031 RchiOBHm_Chr5g0031081 RchiOBHm_Chr5g0031091 RchiOBHm_Chr5g0031131 RchiOBHm_Chr5g0031141
rosa_laevigata	RLG00000033282 RLG00000033283 RLG00000033284 RLG00000033285
rosa_multiflora	Rmu_co8472871.1_g000001 Rmu_co8500049.1_g000001 Rmu_sc0001523.1_g000001 Rmu_sc0005489.1_g000008 Rmu_sc0020175.1_g000004 Rmu_sc0023422.1_g000001 Rmu_sc0023423.1_g000001
rosa_roxburghii	Rroxscaffold_1G00049150 Rroxscaffold_1G00049170 Rroxscaffold_1G00049190 Rroxscaffold_1G00049200 Rroxscaffold_1G00049210 Rroxscaffold_1G00049240
rosa_rugosa	Rorug05G0122300 Rorug05G0122400 Rorug05G0122500
rosa_samantha	Rh5AG215600 Rh5AG215700 Rh5AG216000 Rh5BG214800 Rh5BG214900 Rh5BG215000 Rh5BG215500 Rh5CG238900 Rh5DG219300 Rh5DG219400 Rh5DG219600 Rh5DG219900 Rh5DG220100
rosa_wichuraiana	Rw5G019730 Rw5G019740 Rw5G019750 Rw5G019760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1150
AccI	GTMKAC	2 cut(s)	732, 983
AccII	CGCG	1 cut(s)	233
AciI	CCGC	2 cut(s)	231, 604
AclI	AACGTT	1 cut(s)	1116
AclWI	GGATC	2 cut(s)	382, 1000
AcoI	YGGCCR	1 cut(s)	192
AcuI	CTGAAG	1 cut(s)	380
AfaI	GTAC	2 cut(s)	1000, 1030
AfiI	CCNNNNNNNGG	4 cut(s)	190, 397, 808, 838
AgsI	TTSAA	4 cut(s)	267, 445, 523, 1102
AluBI	AGCT	6 cut(s)	318, 382, 429, 913, 936, 1091
AluI	AGCT	6 cut(s)	318, 382, 429, 913, 936, 1091
Alw26I	GTCTC	2 cut(s)	105, 743
AlwI	GGATC	2 cut(s)	382, 1000
Ama87I	CYCGRG	1 cut(s)	905
AoxI	GGCC	6 cut(s)	123, 192, 250, 393, 650, 829
AspLEI	GCGC	1 cut(s)	90
AspS9I	GGNCC	3 cut(s)	280, 393, 651
AsuC2I	CCSGG	2 cut(s)	140, 392
AsuHPI	GGTGA	5 cut(s)	12, 55, 311, 445, 499
AvaI	CYCGRG	1 cut(s)	905
AvaII	GGWCC	1 cut(s)	280
AxyI	CCTNAGG	2 cut(s)	254, 680
BalI	TGGCCA	1 cut(s)	194
BanI	GGYRCC	1 cut(s)	1150
BanII	GRGCYC	1 cut(s)	906
BauI	CACGAG	1 cut(s)	383
BccI	CCATC	6 cut(s)	105, 197, 410, 430, 689, 950
BceAI	ACGGC	2 cut(s)	75, 472
BclI	TGATCA	1 cut(s)	964
BcnI	CCSGG	2 cut(s)	140, 392
BcoDI	GTCTC	2 cut(s)	105, 743
BfmI	CTRYAG	1 cut(s)	499
BisI	GCNGC	1 cut(s)	605
BlsI	GCNGC	1 cut(s)	606
Bme1390I	CCNGG	2 cut(s)	140, 392
Bme18I	GGWCC	1 cut(s)	280
BmeT110I	CYCGRG	1 cut(s)	905
BmgT120I	GGNCC	3 cut(s)	280, 393, 651
BmiI	GGNNCC	1 cut(s)	1152
BmrFI	CCNGG	2 cut(s)	140, 392
BmrI	ACTGGG	1 cut(s)	745
BmsI	GCATC	2 cut(s)	616, 916
BmuI	ACTGGG	1 cut(s)	745
BpuEI	CTTGAG	1 cut(s)	994
BpuMI	CCSGG	2 cut(s)	140, 392
Bsa29I	ATCGAT	1 cut(s)	693
BsaJI	CCNNGG	1 cut(s)	396
BsaWI	WCCGGW	2 cut(s)	269, 643
Bsc4I	CCNNNNNNNGG	4 cut(s)	190, 397, 808, 838
Bse1I	ACTGG	4 cut(s)	740, 788, 802, 987
Bse21I	CCTNAGG	2 cut(s)	254, 680
BseCI	ATCGAT	1 cut(s)	693
BseDI	CCNNGG	1 cut(s)	396
BseLI	CCNNNNNNNGG	4 cut(s)	190, 397, 808, 838
BseMII	CTCAG	4 cut(s)	268, 638, 694, 786
BseNI	ACTGG	4 cut(s)	740, 788, 802, 987
Bsh1236I	CGCG	1 cut(s)	233
BshFI	GGCC	6 cut(s)	125, 194, 252, 395, 652, 831
BshNI	GGYRCC	1 cut(s)	1150
BshVI	ATCGAT	1 cut(s)	693
BsiHKCI	CYCGRG	1 cut(s)	905
BsiSI	CCGG	4 cut(s)	140, 270, 391, 644
BslFI	GGGAC	1 cut(s)	888
BslI	CCNNNNNNNGG	4 cut(s)	190, 397, 808, 838
BsmAI	GTCTC	2 cut(s)	105, 743
BsmBI	CGTCTC	1 cut(s)	743
BsmFI	GGGAC	1 cut(s)	888
BsnI	GGCC	6 cut(s)	125, 194, 252, 395, 652, 831
BsoBI	CYCGRG	1 cut(s)	905
Bsp1286I	GDGCHC	1 cut(s)	906
Bsp143I	GATC	5 cut(s)	7, 387, 541, 964, 992
BspACI	CCGC	2 cut(s)	231, 604
BspANI	GGCC	6 cut(s)	125, 194, 252, 395, 652, 831
BspCNI	CTCAG	4 cut(s)	267, 637, 693, 785
BspDI	ATCGAT	1 cut(s)	693
BspFNI	CGCG	1 cut(s)	233
BspLI	GGNNCC	1 cut(s)	1152
BspPI	GGATC	2 cut(s)	382, 1000
BspT107I	GGYRCC	1 cut(s)	1150
BsrI	ACTGG	4 cut(s)	740, 788, 802, 987
BssECI	CCNNGG	1 cut(s)	396
BssMI	GATC	5 cut(s)	7, 387, 541, 964, 992
BssNAI	GTATAC	1 cut(s)	984
BssSI	CACGAG	1 cut(s)	383
Bst1107I	GTATAC	1 cut(s)	984
Bst2BI	CACGAG	1 cut(s)	383
Bst4CI	ACNGT	1 cut(s)	601
BstC8I	GCNNGC	4 cut(s)	86, 380, 563, 859
BstDEI	CTNAG	4 cut(s)	254, 624, 680, 772
BstENI	CCTNNNNNAGG	1 cut(s)	836
BstFNI	CGCG	1 cut(s)	233
BstHHI	GCGC	1 cut(s)	90
BstKTI	GATC	5 cut(s)	10, 390, 544, 967, 995
BstMAI	GTCTC	2 cut(s)	105, 743
BstMBI	GATC	5 cut(s)	7, 387, 541, 964, 992
BstMWI	GCNNNNNNNGC	3 cut(s)	562, 858, 910
BstSCI	CCNGG	2 cut(s)	138, 390
BstSFI	CTRYAG	1 cut(s)	499
BstUI	CGCG	1 cut(s)	233
BstZ17I	GTATAC	1 cut(s)	984
Bsu15I	ATCGAT	1 cut(s)	693
Bsu36I	CCTNAGG	2 cut(s)	254, 680
BsuRI	GGCC	6 cut(s)	125, 194, 252, 395, 652, 831
BsuTUI	ATCGAT	1 cut(s)	693
BtsI	GCAGTG	1 cut(s)	563
BtsIMutI	CAGTG	2 cut(s)	563, 994
Cac8I	GCNNGC	4 cut(s)	86, 380, 563, 859
CfoI	GCGC	1 cut(s)	90
Cfr13I	GGNCC	3 cut(s)	280, 393, 651
ClaI	ATCGAT	1 cut(s)	693
Csp6I	GTAC	2 cut(s)	999, 1029
CviAII	CATG	3 cut(s)	79, 277, 1133
CviQI	GTAC	2 cut(s)	999, 1029
DdeI	CTNAG	4 cut(s)	254, 624, 680, 772
DpnI	GATC	5 cut(s)	9, 389, 543, 966, 994
DpnII	GATC	5 cut(s)	7, 387, 541, 964, 992
EaeI	YGGCCR	1 cut(s)	192
Eco147I	AGGCCT	1 cut(s)	252
Eco24I	GRGCYC	1 cut(s)	906
Eco47I	GGWCC	1 cut(s)	280
Eco57I	CTGAAG	1 cut(s)	380
Eco81I	CCTNAGG	2 cut(s)	254, 680
Eco88I	CYCGRG	1 cut(s)	905
EcoNI	CCTNNNNNAGG	1 cut(s)	836
EcoT22I	ATGCAT	1 cut(s)	589
EcoT38I	GRGCYC	1 cut(s)	906
Esp3I	CGTCTC	1 cut(s)	743
FaeI	CATG	3 cut(s)	82, 280, 1136
FaqI	GGGAC	1 cut(s)	888
FatI	CATG	3 cut(s)	78, 276, 1132
FauNDI	CATATG	1 cut(s)	589
FbaI	TGATCA	1 cut(s)	964
FblI	GTMKAC	2 cut(s)	732, 983
Fnu4HI	GCNGC	1 cut(s)	605
FriOI	GRGCYC	1 cut(s)	906
Fsp4HI	GCNGC	1 cut(s)	605
GlaI	GCGC	1 cut(s)	89
GluI	GCNGC	1 cut(s)	605
HaeIII	GGCC	6 cut(s)	125, 194, 252, 395, 652, 831
HapII	CCGG	4 cut(s)	140, 270, 391, 644
HhaI	GCGC	1 cut(s)	90
Hin1II	CATG	3 cut(s)	82, 280, 1136
Hin6I	GCGC	1 cut(s)	88
HinP1I	GCGC	1 cut(s)	88
HincII	GTYRAC	1 cut(s)	778
HindII	GTYRAC	1 cut(s)	778
HindIII	AAGCTT	2 cut(s)	316, 911
HinfI	GANTC	7 cut(s)	98, 504, 532, 636, 690, 770, 1070
HpaI	GTTAAC	1 cut(s)	778
HpaII	CCGG	4 cut(s)	140, 270, 391, 644
HphI	GGTGA	5 cut(s)	12, 55, 311, 445, 499
Hpy166II	GTNNAC	4 cut(s)	733, 778, 984, 1029
Hpy188I	TCNGA	7 cut(s)	97, 110, 360, 400, 537, 811, 1036
Hpy188III	TCNNGA	2 cut(s)	385, 973
Hpy8I	GTNNAC	4 cut(s)	733, 778, 984, 1029
HpyCH4III	ACNGT	1 cut(s)	601
HpyCH4IV	ACGT	1 cut(s)	1116
HpyCH4V	TGCA	4 cut(s)	556, 587, 929, 1041
HpyF10VI	GCNNNNNNNGC	3 cut(s)	562, 858, 910
HpyF3I	CTNAG	4 cut(s)	254, 624, 680, 772
HpySE526I	ACGT	1 cut(s)	1116
Hsp92II	CATG	3 cut(s)	82, 280, 1136
HspAI	GCGC	1 cut(s)	88
Ksp22I	TGATCA	1 cut(s)	964
KspAI	GTTAAC	1 cut(s)	778
Kzo9I	GATC	5 cut(s)	7, 387, 541, 964, 992
LmnI	GCTCC	1 cut(s)	888
LweI	GCATC	2 cut(s)	616, 916
MaeII	ACGT	1 cut(s)	1116
MaeIII	GTNAC	3 cut(s)	489, 722, 1052
MalI	GATC	5 cut(s)	9, 389, 543, 966, 994
MboI	GATC	5 cut(s)	7, 387, 541, 964, 992
MboII	GAAGA	1 cut(s)	144
MhlI	GDGCHC	1 cut(s)	906
MlsI	TGGCCA	1 cut(s)	194
MluCI	AATT	4 cut(s)	371, 619, 1123, 1156
MluNI	TGGCCA	1 cut(s)	194
MlyI	GAGTC	3 cut(s)	107, 541, 764
MmeI	TCCRAC	2 cut(s)	789, 866
Mox20I	TGGCCA	1 cut(s)	194
Mph1103I	ATGCAT	1 cut(s)	589
MscI	TGGCCA	1 cut(s)	194
MseI	TTAA	2 cut(s)	777, 1159
MslI	CAYNNNNRTG	1 cut(s)	1078
Msp20I	TGGCCA	1 cut(s)	194
MspI	CCGG	4 cut(s)	140, 270, 391, 644
MspR9I	CCNGG	2 cut(s)	140, 392
MvnI	CGCG	1 cut(s)	233
MwoI	GCNNNNNNNGC	3 cut(s)	562, 858, 910
NciI	CCSGG	2 cut(s)	140, 392
NdeI	CATATG	1 cut(s)	589
NdeII	GATC	5 cut(s)	7, 387, 541, 964, 992
NlaIII	CATG	3 cut(s)	82, 280, 1136
NlaIV	GGNNCC	1 cut(s)	1152
NmuCI	GTSAC	1 cut(s)	722
NsiI	ATGCAT	1 cut(s)	589
PceI	AGGCCT	1 cut(s)	252
PcsI	WCGNNNNNNNCGW	2 cut(s)	183, 230
PfeI	GAWTC	4 cut(s)	504, 636, 690, 1070
PkrI	GCNGC	1 cut(s)	606
PleI	GAGTC	3 cut(s)	106, 540, 764
PpsI	GAGTC	3 cut(s)	106, 540, 764
Psp1406I	AACGTT	1 cut(s)	1116
PspN4I	GGNNCC	1 cut(s)	1152
PspPI	GGNCC	3 cut(s)	280, 393, 651
RsaI	GTAC	2 cut(s)	1000, 1030
RsaNI	GTAC	2 cut(s)	999, 1029
RseI	CAYNNNNRTG	1 cut(s)	1078
SaqAI	TTAA	2 cut(s)	777, 1159
SatI	GCNGC	1 cut(s)	605
Sau3AI	GATC	5 cut(s)	7, 387, 541, 964, 992
Sau96I	GGNCC	3 cut(s)	280, 393, 651
SchI	GAGTC	3 cut(s)	107, 541, 764
ScrFI	CCNGG	2 cut(s)	140, 392
SduI	GDGCHC	1 cut(s)	906
SfaNI	GCATC	2 cut(s)	616, 916
SfcI	CTRYAG	1 cut(s)	499
SinI	GGWCC	1 cut(s)	280
SmiMI	CAYNNNNRTG	1 cut(s)	1078
SmlI	CTYRAG	1 cut(s)	973
SmoI	CTYRAG	1 cut(s)	973
Sse9I	AATT	4 cut(s)	371, 619, 1123, 1156
SseBI	AGGCCT	1 cut(s)	252
SsiI	CCGC	2 cut(s)	231, 604
SspI	AATATT	1 cut(s)	703
StuI	AGGCCT	1 cut(s)	252
StyD4I	CCNGG	2 cut(s)	138, 390
TaaI	ACNGT	1 cut(s)	601
TaiI	ACGT	1 cut(s)	1119
TaqI	TCGA	6 cut(s)	208, 293, 321, 693, 768, 869
TasI	AATT	4 cut(s)	371, 619, 1123, 1156
TatI	WGTACW	1 cut(s)	1028
TauI	GCSGC	1 cut(s)	607
TfiI	GAWTC	4 cut(s)	504, 636, 690, 1070
Tru1I	TTAA	2 cut(s)	777, 1159
Tru9I	TTAA	2 cut(s)	777, 1159
TscAI	CASTG	2 cut(s)	563, 994
TseFI	GTSAC	1 cut(s)	722
Tsp45I	GTSAC	1 cut(s)	722
TspDTI	ATGAA	2 cut(s)	1062, 1121
TspGWI	ACGGA	1 cut(s)	192
TspRI	CASTG	2 cut(s)	563, 994
VpaK11BI	GGWCC	1 cut(s)	280
XagI	CCTNNNNNAGG	1 cut(s)	836
XmiI	GTMKAC	2 cut(s)	732, 983
Zsp2I	ATGCAT	1 cut(s)	589

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.