Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0016568

Physical Location & Seq

Genomic Coordinates Reverse (-)

11726934 .. 11728292

Gene Structure 1359 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g18370.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1359 bp

ATGGTTTCCCATGCAGCTTTTCTCCTACTTCTCTTCCTCCTCGGCAGCTTCTTTGCCATTCCCTCTCAAGCCCAAGTCCCTGCAAACCAAACATTCATATTTGTCAACCAAGGCGAACTTGGAGACCGAATAGCCGAATTCAAAGCTAGCTACCTTGTGATCCAAACTAAAGCTCACACCTTTTACACGCATCCTTTCAGACTATGCTTCTACAACACCACCCCAGACTCCTACTTCTTTGCCATAAGAATGGGTGTTCCCAATGATGAGGGCCTCATGCGGTGGGTTTGGGATGCAAACCGAAACCACCCAGTGCACGAGAAGGCCACCCTCTCGCTTGGACGGGATGGGAACTTGATCCTTGCCGATGCAGACGGGACTGTTTCTTGGCAAACAAACACGGCCAACAAAGGTGTCACAGGAATAAAGTTGCTTCCAAATGGTAACTTGGTTCTTCATGACAAGAATGGAAGATTCATATGGCAAAGCTTTGACTACCCCCATGATACTCTTCTATTGGGGCAGTCGGTCAAAAATATTACTGGTCATAACAAGCTTATTAGTCGAAAATCTGACGCGGATGGCTCTGATGGGCAATACAGTCTTGCTCTTGATCGAAGTGGTTTCACTATGTACTTGAACAACTCCGGTCAGCTTCTTACATATGGTGGCTGGCCAAACACTAACTTTGGAAGCACTGTAACATTTGACTTGGACACTGCGAATGGCTTTGATGATGTCATATTGTATGAGCTTGTGCTCAAGGGGAACCAAAACATTGATGCTGCACCTCAAAACCGTCGGCGTCTGCTACAAACCCGTCCGATTGGCAATGCAAACACACTCAACCTCAACAAGCTCAACCATGACGCCAAGTACTCATTCTTAAGACTTGGATCGGACGGCAGTCTCAAGGCCTATACTTACTACAATGAAGTCAGCAACCAAAAATGGGATGAGAGTTTCTCATTCTTTTCCAGCTATTTCGTCAGGGAATGTGCATTGCCATCAAAATGTGGGTCTTATGGGTACTGCAGCAATGCCATGTGTGTAGGGTGCCCAAGTCCAAAAGGGCTTCGGGGTTGGAGCAAGGCATGCGTGCCGCCGAAGTTGGCAGCATGTAGGAGCGGAGCAAAGGCGAACTACTACAAGATTGGGGCTGTTGAGCACTTTTTGAGTCCCTATTTAGATGGTGGAGATGGACCGATGAAGGTTGAAGAATGTAGGGCCAAGTGTGATAAGGATTGTAAGTGTTTAGGGTTTTTTTACAGGGAGGCCAGCTCAAAGTGTCTGCTAGCACCGGTGCTTGGTACTCTTATAAAGGAGGTGAATACATCGGTGGGTTACATCAAGTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005886 GO:0005911 GO:0008150 GO:0009505 GO:0009506 GO:0009719 GO:0009725 GO:0009735 GO:0010033 GO:0012505 GO:0016020 GO:0030054 GO:0030312 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048046 GO:0050896 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin PAN_2

Protein Analysis

453

Amino Acids

50.22

Weight (kDa)

8.64

Isoelectric Point (pI)

33.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B_lectin	PF01453	96 - 178	1.5e-19	D-mannose binding lectin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016568)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78820 AT1G78830
fragaria_vesca	FvH4_3g18370
malus_domestica	MD11G1262700.v1.1
prunus_persica	Prupe.4G165500_v2.0.a1
pyrus_communis	pycom11g23160
rosa_laevigata	RLG00000033281
rosa_multiflora	Rmu_sc0001523.1_g000002
rosa_roxburghii	Rroxscaffold_1G00049250
rosa_rugosa	Rorug05G0122300
rosa_samantha	Rh5BG214700 Rh5CG238500 Rh5DG219200
rosa_wichuraiana	Rw5G019720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1319
AccB1I	GGYRCC	1 cut(s)	1056
AccBSI	CCGCTC	1 cut(s)	1128
AccII	CGCG	1 cut(s)	578
AciI	CCGC	4 cut(s)	280, 578, 1103, 1128
AclWI	GGATC	3 cut(s)	154, 352, 904
AcoI	YGGCCR	2 cut(s)	402, 674
AcsI	RAATTY	1 cut(s)	137
AcyI	GRCGYC	2 cut(s)	805, 870
AdeI	CACNNNGTG	1 cut(s)	313
AfaI	GTAC	4 cut(s)	635, 878, 1031, 1312
AfiI	CCNNNNNNNGG	2 cut(s)	952, 1307
AflII	CTTAAG	1 cut(s)	886
AgeI	ACCGGT	1 cut(s)	1300
AgsI	TTSAA	3 cut(s)	142, 640, 1217
AjuI	GAANNNNNNNTTGG	2 cut(s)	866, 898
Alw21I	GWGCWC	3 cut(s)	318, 762, 1170
Alw26I	GTCTC	2 cut(s)	117, 914
Alw44I	GTGCAC	1 cut(s)	314
AlwI	GGATC	3 cut(s)	154, 352, 904
AoxI	GGCC	7 cut(s)	271, 324, 402, 674, 915, 1227, 1275
ApaLI	GTGCAC	1 cut(s)	314
ApeKI	GCWGC	5 cut(s)	14, 45, 785, 1035, 1115
ApoI	RAATTY	1 cut(s)	137
ArsI	GACNNNNNNTTYG	2 cut(s)	1004, 1036
AsiGI	ACCGGT	1 cut(s)	1300
AspS9I	GGNCC	3 cut(s)	271, 1202, 1227
AsuHPI	GGTGA	1 cut(s)	1339
AsuNHI	GCTAGC	2 cut(s)	146, 1294
AvaII	GGWCC	1 cut(s)	1202
BaeGI	GKGCMC	2 cut(s)	318, 1061
BalI	TGGCCA	1 cut(s)	676
BanI	GGYRCC	1 cut(s)	1056
BauI	CACGAG	1 cut(s)	317
Bbv12I	GWGCWC	3 cut(s)	318, 762, 1170
BbvI	GCAGC	5 cut(s)	26, 57, 772, 1047, 1127
BccI	CCATC	6 cut(s)	341, 575, 584, 1015, 1184, 1193
BceAI	ACGGC	2 cut(s)	417, 919
BcoDI	GTCTC	2 cut(s)	117, 914
BfaI	CTAG	2 cut(s)	147, 1295
BfmI	CTRYAG	1 cut(s)	1033
BfrI	CTTAAG	1 cut(s)	886
BisI	GCNGC	6 cut(s)	15, 46, 786, 1036, 1103, 1116
BlsI	GCNGC	6 cut(s)	16, 47, 787, 1037, 1104, 1117
BmcAI	AGTACT	1 cut(s)	878
Bme18I	GGWCC	1 cut(s)	1202
BmgT120I	GGNCC	3 cut(s)	271, 1202, 1227
BmiI	GGNNCC	2 cut(s)	770, 1058
BmrI	ACTGGG	1 cut(s)	305
BmsI	GCATC	4 cut(s)	199, 283, 358, 772
BmtI	GCTAGC	2 cut(s)	150, 1298
BmuI	ACTGGG	1 cut(s)	305
BoxI	GACNNNNGTC	1 cut(s)	906
BplI	GAGNNNNNCTC	4 cut(s)	950, 982, 1265, 1297
BpuEI	CTTGAG	3 cut(s)	51, 746, 896
BsaHI	GRCGYC	2 cut(s)	805, 870
BsaI	GGTCTC	1 cut(s)	117
BsaJI	CCNNGG	2 cut(s)	40, 109
BsaWI	WCCGGW	2 cut(s)	647, 1300
Bsc4I	CCNNNNNNNGG	2 cut(s)	952, 1307
Bse118I	RCCGGY	1 cut(s)	1300
Bse1I	ACTGG	2 cut(s)	311, 547
Bse3DI	GCAATG	3 cut(s)	838, 1001, 1045
BseDI	CCNNGG	2 cut(s)	40, 109
BseGI	GGATG	5 cut(s)	190, 298, 352, 586, 961
BseLI	CCNNNNNNNGG	2 cut(s)	952, 1307
BseMI	GCAATG	3 cut(s)	838, 1001, 1045
BseNI	ACTGG	2 cut(s)	311, 547
BseRI	GAGGAG	1 cut(s)	29
BseSI	GKGCMC	2 cut(s)	318, 1061
BseXI	GCAGC	5 cut(s)	26, 57, 772, 1047, 1127
BsgI	GTGCAG	1 cut(s)	771
Bsh1236I	CGCG	1 cut(s)	578
BshFI	GGCC	7 cut(s)	273, 326, 404, 676, 917, 1229, 1277
BshNI	GGYRCC	1 cut(s)	1056
BshTI	ACCGGT	1 cut(s)	1300
BsiHKAI	GWGCWC	3 cut(s)	318, 762, 1170
BsiSI	CCGG	2 cut(s)	648, 1301
BslFI	GGGAC	3 cut(s)	62, 391, 1164
BslI	CCNNNNNNNGG	2 cut(s)	952, 1307
BsmAI	GTCTC	2 cut(s)	117, 914
BsmFI	GGGAC	3 cut(s)	62, 391, 1164
BsnI	GGCC	7 cut(s)	273, 326, 404, 676, 917, 1229, 1277
Bso31I	GGTCTC	1 cut(s)	117
Bsp1286I	GDGCHC	4 cut(s)	318, 762, 1061, 1170
Bsp143I	GATC	4 cut(s)	159, 357, 613, 896
BspACI	CCGC	4 cut(s)	280, 578, 1103, 1128
BspANI	GGCC	7 cut(s)	273, 326, 404, 676, 917, 1229, 1277
BspFNI	CGCG	1 cut(s)	578
BspHI	TCATGA	1 cut(s)	457
BspLI	GGNNCC	2 cut(s)	770, 1058
BspMAI	CTGCAG	1 cut(s)	1037
BspOI	GCTAGC	2 cut(s)	150, 1298
BspPI	GGATC	3 cut(s)	154, 352, 904
BspT107I	GGYRCC	1 cut(s)	1056
BspTI	CTTAAG	1 cut(s)	886
BspTNI	GGTCTC	1 cut(s)	117
BsrBI	CCGCTC	1 cut(s)	1128
BsrDI	GCAATG	3 cut(s)	838, 1001, 1045
BsrFI	RCCGGY	1 cut(s)	1300
BsrI	ACTGG	2 cut(s)	311, 547
BssAI	RCCGGY	1 cut(s)	1300
BssECI	CCNNGG	2 cut(s)	40, 109
BssMI	GATC	4 cut(s)	159, 357, 613, 896
BssNI	GRCGYC	2 cut(s)	805, 870
BssSI	CACGAG	1 cut(s)	317
BssT1I	CCWWGG	1 cut(s)	109
Bst2BI	CACGAG	1 cut(s)	317
Bst4CI	ACNGT	4 cut(s)	382, 602, 700, 800
Bst6I	CTCTTC	2 cut(s)	38, 516
BstACI	GRCGYC	2 cut(s)	805, 870
BstAFI	CTTAAG	1 cut(s)	886
BstAPI	GCANNNNNTGC	1 cut(s)	1095
BstC8I	GCNNGC	6 cut(s)	148, 674, 1096, 1100, 1279, 1296
BstF5I	GGATG	5 cut(s)	190, 298, 352, 586, 961
BstFNI	CGCG	1 cut(s)	578
BstKTI	GATC	4 cut(s)	162, 360, 616, 899
BstMAI	GTCTC	2 cut(s)	117, 914
BstMBI	GATC	4 cut(s)	159, 357, 613, 896
BstMWI	GCNNNNNNNGC	1 cut(s)	1095
BstNSI	RCATGY	2 cut(s)	1098, 1122
BstPAI	GACNNNNGTC	1 cut(s)	906
BstSFI	CTRYAG	1 cut(s)	1033
BstSLI	GKGCMC	2 cut(s)	318, 1061
BstUI	CGCG	1 cut(s)	578
BstV1I	GCAGC	5 cut(s)	26, 57, 772, 1047, 1127
BstXI	CCANNNNNNTGG	1 cut(s)	250
BsuRI	GGCC	7 cut(s)	273, 326, 404, 676, 917, 1229, 1277
BtsCI	GGATG	5 cut(s)	190, 298, 352, 586, 961
BtsI	GCAGTG	1 cut(s)	717
BtsIMutI	CAGTG	3 cut(s)	318, 696, 717
Cac8I	GCNNGC	6 cut(s)	148, 674, 1096, 1100, 1279, 1296
CciI	TCATGA	1 cut(s)	457
Cfr10I	RCCGGY	1 cut(s)	1300
Cfr13I	GGNCC	3 cut(s)	271, 1202, 1227
CseI	GACGC	3 cut(s)	584, 794, 878
Csp6I	GTAC	4 cut(s)	634, 877, 1030, 1311
CspAI	ACCGGT	1 cut(s)	1300
CviAII	CATG	8 cut(s)	11, 277, 458, 503, 866, 1045, 1095, 1119
CviQI	GTAC	4 cut(s)	634, 877, 1030, 1311
DpnI	GATC	4 cut(s)	161, 359, 615, 898
DpnII	GATC	4 cut(s)	159, 357, 613, 896
DraIII	CACNNNGTG	1 cut(s)	313
EaeI	YGGCCR	2 cut(s)	402, 674
Eam1104I	CTCTTC	2 cut(s)	38, 516
EarI	CTCTTC	2 cut(s)	38, 516
Eco130I	CCWWGG	1 cut(s)	109
Eco147I	AGGCCT	1 cut(s)	917
Eco31I	GGTCTC	1 cut(s)	117
Eco47I	GGWCC	1 cut(s)	1202
EcoO109I	RGGNCCY	1 cut(s)	271
EcoRI	GAATTC	1 cut(s)	137
EcoT14I	CCWWGG	1 cut(s)	109
ErhI	CCWWGG	1 cut(s)	109
FaeI	CATG	8 cut(s)	14, 280, 461, 506, 869, 1048, 1098, 1122
FalI	AAGNNNNNCTT	2 cut(s)	102, 134
FaqI	GGGAC	3 cut(s)	62, 391, 1164
FatI	CATG	8 cut(s)	10, 276, 457, 502, 865, 1044, 1094, 1118
FauNDI	CATATG	2 cut(s)	479, 664
Fnu4HI	GCNGC	6 cut(s)	15, 46, 786, 1036, 1103, 1116
FokI	GGATG	5 cut(s)	177, 305, 359, 593, 968
Fsp4HI	GCNGC	6 cut(s)	15, 46, 786, 1036, 1103, 1116
FspBI	CTAG	2 cut(s)	147, 1295
GluI	GCNGC	6 cut(s)	15, 46, 786, 1036, 1103, 1116
HaeIII	GGCC	7 cut(s)	273, 326, 404, 676, 917, 1229, 1277
HapII	CCGG	2 cut(s)	648, 1301
HgaI	GACGC	3 cut(s)	584, 794, 878
Hin1I	GRCGYC	2 cut(s)	805, 870
Hin1II	CATG	8 cut(s)	14, 280, 461, 506, 869, 1048, 1098, 1122
HincII	GTYRAC	1 cut(s)	106
HindII	GTYRAC	1 cut(s)	106
HindIII	AAGCTT	2 cut(s)	487, 554
HinfI	GANTC	3 cut(s)	227, 474, 1177
HpaII	CCGG	2 cut(s)	648, 1301
HphI	GGTGA	1 cut(s)	1339
Hpy166II	GTNNAC	2 cut(s)	106, 316
Hpy188I	TCNGA	5 cut(s)	200, 574, 589, 825, 901
Hpy188III	TCNNGA	2 cut(s)	458, 611
Hpy8I	GTNNAC	2 cut(s)	106, 316
Hpy99I	CGWCG	1 cut(s)	804
HpyAV	CCTTC	2 cut(s)	316, 1204
HpyCH4III	ACNGT	4 cut(s)	382, 602, 700, 800
HpyCH4V	TGCA	9 cut(s)	14, 83, 296, 316, 371, 788, 836, 1001, 1035
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1095
Hsp92I	GRCGYC	2 cut(s)	805, 870
Hsp92II	CATG	8 cut(s)	14, 280, 461, 506, 869, 1048, 1098, 1122
Kzo9I	GATC	4 cut(s)	159, 357, 613, 896
LmnI	GCTCC	3 cut(s)	1086, 1125, 1130
Lsp1109I	GCAGC	5 cut(s)	26, 57, 772, 1047, 1127
LweI	GCATC	4 cut(s)	199, 283, 358, 772
MaeI	CTAG	2 cut(s)	147, 1295
MaeIII	GTNAC	4 cut(s)	415, 443, 700, 1343
MalI	GATC	4 cut(s)	161, 359, 615, 898
MbiI	CCGCTC	1 cut(s)	1128
MboI	GATC	4 cut(s)	159, 357, 613, 896
MboII	GAAGA	5 cut(s)	25, 446, 483, 503, 1229
MhlI	GDGCHC	4 cut(s)	318, 762, 1061, 1170
MlsI	TGGCCA	1 cut(s)	676
MluCI	AATT	1 cut(s)	137
MluNI	TGGCCA	1 cut(s)	676
MlyI	GAGTC	2 cut(s)	221, 1186
MmeI	TCCRAC	1 cut(s)	1064
Mox20I	TGGCCA	1 cut(s)	676
MscI	TGGCCA	1 cut(s)	676
MseI	TTAA	1 cut(s)	887
MslI	CAYNNNNRTG	2 cut(s)	248, 1012
Msp20I	TGGCCA	1 cut(s)	676
MspCI	CTTAAG	1 cut(s)	886
MspI	CCGG	2 cut(s)	648, 1301
MvnI	CGCG	1 cut(s)	578
MwoI	GCNNNNNNNGC	1 cut(s)	1095
NdeI	CATATG	2 cut(s)	479, 664
NdeII	GATC	4 cut(s)	159, 357, 613, 896
NheI	GCTAGC	2 cut(s)	146, 1294
NlaIII	CATG	8 cut(s)	14, 280, 461, 506, 869, 1048, 1098, 1122
NlaIV	GGNNCC	2 cut(s)	770, 1058
NmeAIII	GCCGAG	1 cut(s)	21
NmuCI	GTSAC	1 cut(s)	415
NspI	RCATGY	2 cut(s)	1098, 1122
PaeI	GCATGC	1 cut(s)	1098
PagI	TCATGA	1 cut(s)	457
PceI	AGGCCT	1 cut(s)	917
PfeI	GAWTC	1 cut(s)	474
PinAI	ACCGGT	1 cut(s)	1300
PkrI	GCNGC	6 cut(s)	16, 47, 787, 1037, 1104, 1117
PleI	GAGTC	2 cut(s)	221, 1185
PpsI	GAGTC	2 cut(s)	221, 1185
PshAI	GACNNNNGTC	1 cut(s)	906
PsiI	TTATAA	1 cut(s)	1319
PspN4I	GGNNCC	2 cut(s)	770, 1058
PspPI	GGNCC	3 cut(s)	271, 1202, 1227
PstI	CTGCAG	1 cut(s)	1037
RsaI	GTAC	4 cut(s)	635, 878, 1031, 1312
RsaNI	GTAC	4 cut(s)	634, 877, 1030, 1311
RseI	CAYNNNNRTG	2 cut(s)	248, 1012
SaqAI	TTAA	1 cut(s)	887
SatI	GCNGC	6 cut(s)	15, 46, 786, 1036, 1103, 1116
Sau3AI	GATC	4 cut(s)	159, 357, 613, 896
Sau96I	GGNCC	3 cut(s)	271, 1202, 1227
ScaI	AGTACT	1 cut(s)	878
SchI	GAGTC	2 cut(s)	221, 1186
SduI	GDGCHC	4 cut(s)	318, 762, 1061, 1170
SfaNI	GCATC	4 cut(s)	199, 283, 358, 772
SfcI	CTRYAG	1 cut(s)	1033
SgrAI	CRCCGGYG	1 cut(s)	1300
SinI	GGWCC	1 cut(s)	1202
SmiMI	CAYNNNNRTG	2 cut(s)	248, 1012
SmlI	CTYRAG	4 cut(s)	66, 761, 886, 911
SmoI	CTYRAG	4 cut(s)	66, 761, 886, 911
SphI	GCATGC	1 cut(s)	1098
Sse9I	AATT	1 cut(s)	137
SseBI	AGGCCT	1 cut(s)	917
SsiI	CCGC	4 cut(s)	280, 578, 1103, 1128
SspI	AATATT	1 cut(s)	538
SspMI	CTAG	2 cut(s)	147, 1295
StuI	AGGCCT	1 cut(s)	917
StyI	CCWWGG	1 cut(s)	109
TaaI	ACNGT	4 cut(s)	382, 602, 700, 800
TaqI	TCGA	2 cut(s)	565, 616
TaqII	GACCGA	3 cut(s)	141, 517, 1219
TasI	AATT	1 cut(s)	137
TatI	WGTACW	2 cut(s)	633, 876
TauI	GCSGC	1 cut(s)	1105
TfiI	GAWTC	1 cut(s)	474
Tru1I	TTAA	1 cut(s)	887
Tru9I	TTAA	1 cut(s)	887
TscAI	CASTG	3 cut(s)	318, 703, 724
TseFI	GTSAC	1 cut(s)	415
TseI	GCWGC	5 cut(s)	14, 45, 785, 1035, 1115
Tsp45I	GTSAC	1 cut(s)	415
TspDTI	ATGAA	5 cut(s)	85, 446, 466, 948, 1223
TspRI	CASTG	3 cut(s)	318, 703, 724
Vha464I	CTTAAG	1 cut(s)	886
VneI	GTGCAC	1 cut(s)	314
VpaK11BI	GGWCC	1 cut(s)	1202
XapI	RAATTY	1 cut(s)	137
XceI	RCATGY	2 cut(s)	1098, 1122
XcmI	CCANNNNNNNNNTGG	1 cut(s)	116
XspI	CTAG	2 cut(s)	147, 1295
ZrmI	AGTACT	1 cut(s)	878

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.