Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0016568

Physical Location & Seq

Genomic Coordinates Reverse (-)

24791774 .. 24792502

Gene Structure 729 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG214700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGTACCTGAACAACTCCGGTCAGCTTCTTACATATGGTGGCTGGACAGACAGTAACTTTGGAAGCACTGTGACATTTGACTATCAAACTACGAATGGCTTTGATGACGTCATGGCTTATGAGCTTGTTCTCAATGTGAACCAAGACGTTGATGCTCCACCTCAGAACCGTCGGCGCCTCCTACAAACCCGTCCCATTGGCAATGCACATCAAATCAACCTCAACCAGCTCAACTACGACGCTAAGTACTCATTCTTAAGACTTGGATCAGATGGCAGTCTCAAGGCCTATACTTACTACAACAAAGTCAGCAACCAAAAATGGGATGAGAGTTTCTCATTCTTTTCGAGTTATTTCGTCAGGGAATGCGCATTGCCATCAAAATGTGGGTTTTATGGGTACTGTAGCAATGGCATGTGTGTAGCATGCCCAAGTCCAAAAGGGCTTCTGGGTTGGAGCAAGGCATGCGCGCCGCCAAAGTTGGCAGCATGCAAGAGCGGAGCAAAGGTGGACTACTACAAGATTGTGGCAGTTGAGCACTTTTTGAGTCCCTATTTGGACGGTGGAGATGGACCGATGAAGGTTGAAGAGTGTAGGGCCAAGTGTGATAATGACTGTAAGTGTTTAGGTTTTTTTTACAGGGAAGCCAGCTCAAAGTGTCTGCTAGCACCAGTACTTGGGACTCTCATAAAGGAGGTGAATACATCAGTGGGTTACATCAAGTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005886 GO:0005911 GO:0008150 GO:0009505 GO:0009506 GO:0009719 GO:0009725 GO:0009735 GO:0010033 GO:0012505 GO:0016020 GO:0030054 GO:0030312 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048046 GO:0050896 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin PAN_2

Protein Analysis

242

Amino Acids

26.99

Weight (kDa)

8.17

Isoelectric Point (pI)

42.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016568)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78820 AT1G78830
fragaria_vesca	FvH4_3g18370
malus_domestica	MD11G1262700.v1.1
prunus_persica	Prupe.4G165500_v2.0.a1
pyrus_communis	pycom11g23160
rosa_laevigata	RLG00000033281
rosa_multiflora	Rmu_sc0001523.1_g000002
rosa_roxburghii	Rroxscaffold_1G00049250
rosa_rugosa	Rorug05G0122300
rosa_samantha	Rh5BG214700 Rh5CG238500 Rh5DG219200
rosa_wichuraiana	Rw5G019720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	111
Acc16I	TGCGCA	1 cut(s)	370
AccB1I	GGYRCC	1 cut(s)	174
AccB7I	CCANNNNNTGG	1 cut(s)	677
AccBSI	CCGCTC	1 cut(s)	498
AccII	CGCG	1 cut(s)	470
AciI	CCGC	2 cut(s)	473, 498
AclWI	GGATC	1 cut(s)	274
AcyI	GRCGYC	2 cut(s)	108, 175
AfaI	GTAC	4 cut(s)	5, 248, 401, 675
AfiI	CCNNNNNNNGG	2 cut(s)	322, 677
AflII	CTTAAG	1 cut(s)	256
AgsI	TTSAA	1 cut(s)	587
AluBI	AGCT	4 cut(s)	25, 124, 229, 651
AluI	AGCT	4 cut(s)	25, 124, 229, 651
Alw21I	GWGCWC	1 cut(s)	540
Alw26I	GTCTC	1 cut(s)	284
AlwI	GGATC	1 cut(s)	274
AoxI	GGCC	2 cut(s)	285, 597
ApeKI	GCWGC	1 cut(s)	485
ArsI	GACNNNNNNTTYG	2 cut(s)	41, 73
AspLEI	GCGC	4 cut(s)	177, 371, 470, 472
AspS9I	GGNCC	2 cut(s)	572, 597
AsuHPI	GGTGA	1 cut(s)	709
AsuNHI	GCTAGC	1 cut(s)	664
AvaII	GGWCC	1 cut(s)	572
BanI	GGYRCC	1 cut(s)	174
Bbv12I	GWGCWC	1 cut(s)	540
BbvI	GCAGC	1 cut(s)	497
BccI	CCATC	3 cut(s)	266, 385, 563
BcoDI	GTCTC	1 cut(s)	284
BfaI	CTAG	1 cut(s)	665
BfmI	CTRYAG	1 cut(s)	403
BfoI	RGCGCY	1 cut(s)	178
BfrI	CTTAAG	1 cut(s)	256
BisI	GCNGC	2 cut(s)	473, 486
BlsI	GCNGC	2 cut(s)	474, 487
BmcAI	AGTACT	2 cut(s)	248, 675
Bme18I	GGWCC	1 cut(s)	572
BmgT120I	GGNCC	2 cut(s)	572, 597
BmiI	GGNNCC	1 cut(s)	176
BmsI	GCATC	1 cut(s)	142
BmtI	GCTAGC	1 cut(s)	668
BplI	GAGNNNNNCTC	2 cut(s)	320, 352
BpuEI	CTTGAG	1 cut(s)	266
BsaHI	GRCGYC	2 cut(s)	108, 175
BsaWI	WCCGGW	1 cut(s)	17
BsaXI	ACNNNNNCTCC	2 cut(s)	492, 522
Bsc4I	CCNNNNNNNGG	2 cut(s)	322, 677
Bse1I	ACTGG	1 cut(s)	671
Bse3DI	GCAATG	3 cut(s)	208, 371, 415
BseGI	GGATG	1 cut(s)	331
BseLI	CCNNNNNNNGG	2 cut(s)	322, 677
BseMI	GCAATG	3 cut(s)	208, 371, 415
BseMII	CTCAG	1 cut(s)	176
BseNI	ACTGG	1 cut(s)	671
BsePI	GCGCGC	1 cut(s)	468
BseXI	GCAGC	1 cut(s)	497
Bsh1236I	CGCG	1 cut(s)	470
BshFI	GGCC	2 cut(s)	287, 599
BshNI	GGYRCC	1 cut(s)	174
BsiHKAI	GWGCWC	1 cut(s)	540
BsiSI	CCGG	1 cut(s)	18
BslFI	GGGAC	3 cut(s)	177, 534, 694
BslI	CCNNNNNNNGG	2 cut(s)	322, 677
BsmAI	GTCTC	1 cut(s)	284
BsmFI	GGGAC	3 cut(s)	177, 534, 694
BsmI	GAATGC	1 cut(s)	371
BsnI	GGCC	2 cut(s)	287, 599
Bsp1286I	GDGCHC	1 cut(s)	540
Bsp143I	GATC	1 cut(s)	266
BspACI	CCGC	2 cut(s)	473, 498
BspANI	GGCC	2 cut(s)	287, 599
BspCNI	CTCAG	1 cut(s)	175
BspFNI	CGCG	1 cut(s)	470
BspLI	GGNNCC	1 cut(s)	176
BspOI	GCTAGC	1 cut(s)	668
BspPI	GGATC	1 cut(s)	274
BspT107I	GGYRCC	1 cut(s)	174
BspTI	CTTAAG	1 cut(s)	256
BsrBI	CCGCTC	1 cut(s)	498
BsrDI	GCAATG	3 cut(s)	208, 371, 415
BsrI	ACTGG	1 cut(s)	671
BssHII	GCGCGC	1 cut(s)	468
BssMI	GATC	1 cut(s)	266
BssNI	GRCGYC	2 cut(s)	108, 175
Bst4CI	ACNGT	6 cut(s)	53, 70, 170, 404, 563, 617
Bst6I	CTCTTC	1 cut(s)	582
BstACI	GRCGYC	2 cut(s)	108, 175
BstAFI	CTTAAG	1 cut(s)	256
BstAPI	GCANNNNNTGC	1 cut(s)	465
BstC8I	GCNNGC	6 cut(s)	427, 466, 470, 490, 649, 666
BstDEI	CTNAG	2 cut(s)	162, 243
BstF5I	GGATG	1 cut(s)	331
BstFNI	CGCG	1 cut(s)	470
BstH2I	RGCGCY	1 cut(s)	178
BstHHI	GCGC	4 cut(s)	177, 371, 470, 472
BstKTI	GATC	1 cut(s)	269
BstMAI	GTCTC	1 cut(s)	284
BstMBI	GATC	1 cut(s)	266
BstMWI	GCNNNNNNNGC	1 cut(s)	465
BstNSI	RCATGY	4 cut(s)	418, 429, 468, 492
BstSFI	CTRYAG	1 cut(s)	403
BstUI	CGCG	1 cut(s)	470
BstV1I	GCAGC	1 cut(s)	497
BsuRI	GGCC	2 cut(s)	287, 599
BtsCI	GGATG	1 cut(s)	331
BtsIMutI	CAGTG	2 cut(s)	66, 714
Cac8I	GCNNGC	6 cut(s)	427, 466, 470, 490, 649, 666
CfoI	GCGC	4 cut(s)	177, 371, 470, 472
Cfr13I	GGNCC	2 cut(s)	572, 597
CseI	GACGC	1 cut(s)	248
Csp6I	GTAC	4 cut(s)	4, 247, 400, 674
CviAII	CATG	5 cut(s)	112, 415, 426, 465, 489
CviQI	GTAC	4 cut(s)	4, 247, 400, 674
DdeI	CTNAG	2 cut(s)	162, 243
DinI	GGCGCC	1 cut(s)	176
DpnI	GATC	1 cut(s)	268
DpnII	GATC	1 cut(s)	266
Eam1104I	CTCTTC	1 cut(s)	582
EarI	CTCTTC	1 cut(s)	582
Eco147I	AGGCCT	1 cut(s)	287
Eco47I	GGWCC	1 cut(s)	572
EgeI	GGCGCC	1 cut(s)	176
EheI	GGCGCC	1 cut(s)	176
FaeI	CATG	5 cut(s)	115, 418, 429, 468, 492
FaqI	GGGAC	3 cut(s)	177, 534, 694
FatI	CATG	5 cut(s)	111, 414, 425, 464, 488
FauNDI	CATATG	1 cut(s)	34
Fnu4HI	GCNGC	2 cut(s)	473, 486
FokI	GGATG	1 cut(s)	338
Fsp4HI	GCNGC	2 cut(s)	473, 486
FspAI	RTGCGCAY	1 cut(s)	370
FspBI	CTAG	1 cut(s)	665
FspI	TGCGCA	1 cut(s)	370
GlaI	GCGC	4 cut(s)	176, 370, 469, 471
GluI	GCNGC	2 cut(s)	473, 486
HaeII	RGCGCY	1 cut(s)	178
HaeIII	GGCC	2 cut(s)	287, 599
HapII	CCGG	1 cut(s)	18
HgaI	GACGC	1 cut(s)	248
HhaI	GCGC	4 cut(s)	177, 371, 470, 472
Hin1I	GRCGYC	2 cut(s)	108, 175
Hin1II	CATG	5 cut(s)	115, 418, 429, 468, 492
Hin6I	GCGC	4 cut(s)	175, 369, 468, 470
HinP1I	GCGC	4 cut(s)	175, 369, 468, 470
HinfI	GANTC	2 cut(s)	547, 682
HpaII	CCGG	1 cut(s)	18
HphI	GGTGA	1 cut(s)	709
Hpy166II	GTNNAC	2 cut(s)	139, 511
Hpy188I	TCNGA	2 cut(s)	165, 271
Hpy8I	GTNNAC	2 cut(s)	139, 511
Hpy99I	CGWCG	2 cut(s)	174, 242
HpyAV	CCTTC	1 cut(s)	574
HpyCH4III	ACNGT	6 cut(s)	53, 70, 170, 404, 563, 617
HpyCH4IV	ACGT	2 cut(s)	108, 147
HpyCH4V	TGCA	2 cut(s)	206, 492
HpyF10VI	GCNNNNNNNGC	1 cut(s)	465
HpyF3I	CTNAG	2 cut(s)	162, 243
HpySE526I	ACGT	2 cut(s)	108, 147
Hsp92I	GRCGYC	2 cut(s)	108, 175
Hsp92II	CATG	5 cut(s)	115, 418, 429, 468, 492
HspAI	GCGC	4 cut(s)	175, 369, 468, 470
KasI	GGCGCC	1 cut(s)	174
Kzo9I	GATC	1 cut(s)	266
LmnI	GCTCC	3 cut(s)	160, 456, 500
LpnPI	CCDG	9 cut(s)	20, 28, 31, 239, 346, 434, 625, 661, 684
Lsp1109I	GCAGC	1 cut(s)	497
LweI	GCATC	1 cut(s)	142
MaeI	CTAG	1 cut(s)	665
MaeII	ACGT	2 cut(s)	108, 147
MaeIII	GTNAC	3 cut(s)	53, 70, 713
MalI	GATC	1 cut(s)	268
MbiI	CCGCTC	1 cut(s)	498
MboI	GATC	1 cut(s)	266
MboII	GAAGA	1 cut(s)	599
MhlI	GDGCHC	1 cut(s)	540
Mly113I	GGCGCC	1 cut(s)	175
MlyI	GAGTC	2 cut(s)	556, 676
MmeI	TCCRAC	1 cut(s)	434
MnlI	CCTC	4 cut(s)	171, 188, 230, 688
MseI	TTAA	1 cut(s)	257
MslI	CAYNNNNRTG	1 cut(s)	382
MspCI	CTTAAG	1 cut(s)	256
MspI	CCGG	1 cut(s)	18
Mva1269I	GAATGC	1 cut(s)	371
MvnI	CGCG	1 cut(s)	470
MwoI	GCNNNNNNNGC	1 cut(s)	465
NarI	GGCGCC	1 cut(s)	175
NdeI	CATATG	1 cut(s)	34
NdeII	GATC	1 cut(s)	266
NheI	GCTAGC	1 cut(s)	664
NlaIII	CATG	5 cut(s)	115, 418, 429, 468, 492
NlaIV	GGNNCC	1 cut(s)	176
NmuCI	GTSAC	1 cut(s)	70
NsbI	TGCGCA	1 cut(s)	370
NspI	RCATGY	4 cut(s)	418, 429, 468, 492
PaeI	GCATGC	3 cut(s)	429, 468, 492
PauI	GCGCGC	1 cut(s)	468
PceI	AGGCCT	1 cut(s)	287
PctI	GAATGC	1 cut(s)	371
PflMI	CCANNNNNTGG	1 cut(s)	677
PkrI	GCNGC	2 cut(s)	474, 487
PleI	GAGTC	2 cut(s)	555, 676
PluTI	GGCGCC	1 cut(s)	178
PpsI	GAGTC	2 cut(s)	555, 676
PspN4I	GGNNCC	1 cut(s)	176
PspPI	GGNCC	2 cut(s)	572, 597
PteI	GCGCGC	1 cut(s)	468
RsaI	GTAC	4 cut(s)	5, 248, 401, 675
RsaNI	GTAC	4 cut(s)	4, 247, 400, 674
RseI	CAYNNNNRTG	1 cut(s)	382
SaqAI	TTAA	1 cut(s)	257
SatI	GCNGC	2 cut(s)	473, 486
Sau3AI	GATC	1 cut(s)	266
Sau96I	GGNCC	2 cut(s)	572, 597
ScaI	AGTACT	2 cut(s)	248, 675
SchI	GAGTC	2 cut(s)	556, 676
SduI	GDGCHC	1 cut(s)	540
SfaNI	GCATC	1 cut(s)	142
SfcI	CTRYAG	1 cut(s)	403
SfoI	GGCGCC	1 cut(s)	176
SinI	GGWCC	1 cut(s)	572
SmiMI	CAYNNNNRTG	1 cut(s)	382
SmlI	CTYRAG	2 cut(s)	256, 281
SmoI	CTYRAG	2 cut(s)	256, 281
SphI	GCATGC	3 cut(s)	429, 468, 492
SseBI	AGGCCT	1 cut(s)	287
SsiI	CCGC	2 cut(s)	473, 498
SspDI	GGCGCC	1 cut(s)	174
SspMI	CTAG	1 cut(s)	665
StuI	AGGCCT	1 cut(s)	287
TaaI	ACNGT	6 cut(s)	53, 70, 170, 404, 563, 617
TaiI	ACGT	2 cut(s)	111, 150
TaqI	TCGA	1 cut(s)	347
TaqII	GACCGA	1 cut(s)	589
TatI	WGTACW	2 cut(s)	246, 673
TauI	GCSGC	1 cut(s)	475
Tru1I	TTAA	1 cut(s)	257
Tru9I	TTAA	1 cut(s)	257
TscAI	CASTG	2 cut(s)	73, 714
TseFI	GTSAC	1 cut(s)	70
TseI	GCWGC	1 cut(s)	485
Tsp45I	GTSAC	1 cut(s)	70
TspDTI	ATGAA	1 cut(s)	593
TspRI	CASTG	2 cut(s)	73, 714
Van91I	CCANNNNNTGG	1 cut(s)	677
Vha464I	CTTAAG	1 cut(s)	256
VpaK11BI	GGWCC	1 cut(s)	572
XceI	RCATGY	4 cut(s)	418, 429, 468, 492
XspI	CTAG	1 cut(s)	665
ZraI	GACGTC	1 cut(s)	109
ZrmI	AGTACT	2 cut(s)	248, 675

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.