Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0016568

Physical Location & Seq

Genomic Coordinates Reverse (-)

9611237 .. 9612755

Gene Structure 1519 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G165500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1386 bp

ATGGCAGCTATAATTCCACATTCACCTTTTCTCCTACTACTCTTCTCCCTCCTTGCCATCTTCTTTGTCATTCCCATTCAATCCCAAGTCCCAGCAAACCAGACCTTCAAGTTCATCAACCAAGGCGAATTTGAAGACGGAAACGTCGAATACCATTCTACTTACCGTGTGATCCAAACCAATGCATACACCTTCTATAGATACCCTTTCAGGCTATGCTTCTACAACACCACCCCAGATTCCTACGTATTCGCCATCAGAGCCGGAGTTCCGAGAGACTTAGGCCTCATGCGGTGGGTCTGGGACGCAAACCGGAACCACCCGGTGCACGAGAAGGCCACTCTCTCTTTCGGCAGAGACGGAAACTTGGTTCTCGGAGAGGCAGATGGGACTGTTGTTTGGCAAACAAACACAGCCAACAAAGGTGTCACAGGCATCAAGTTACTGGGAAACGGCAACTTGGTTCTTCATGACAAGAATGGAAAATTCATATGGCAGAGCTTTGATTACCCTACTGATACTCTTCTGCTGGGGCAGTCAGTCAAAACTAATGGCCGTAACAAGCTTGTTAGTCGAAAATCTGATGCCGATGGCTCTGACGGGCCATACAGCCTTCTTCTTGACCACAAAGGTTTCGCCATGTACTTGAACAACAGTGGAAAACTTCTTGTGTATGGGGGGTGGCGAGGCAGCGACTATGGAAGTATTGTGACCTTTGATGTCGAAACTGAGATTGGCTTCGACGATGTAATTTATTATGAGTTAGTGCTCACTGTAAACCAAGACGTTAATGCGCCGCCGCCTCCTCCACCACAAAGCCATAGGCACCTCCTACAAGTCCGTCCCATTGGCAATGCACACCAAATCAACCTTAACAAACTCAACTACAATGCTACATACTCATTGCTAAGGCTTGGGTCCGATGGCAGTCTCAAGGCCTATACTTACTATGACAAAGTGAGTTCCAATACATGGGAAGAGAGCTTCTCATTCTTTTCAAGCTATTTCGTTAGAGAATGTGGATTGCCATCAAAATGTGGGTCATATGGGTATTGTAGTAGGGGCATGTGTGTGGGGTGCCCTACCCCAAAGGGGCTTCTGGGTTGGAGCAAGGGCTGTGCACCTCCAAAGTTGGGGCAGTGTAAGAGTGGAGCTAAAGTGGACTACTACAAGATTGGGAGCGTTGAGCACTTTATGAGTCCTTATTTGGACGGTGGAGATGGCCCGATGAAGGTCGGAGAGTGCAGGGCCAAGTGTGATAAGGACTGCAAGTGTTTAGGGTTCTTTTACAGGGAAAATAGCTCCAAGTGTTTGTTGGCTCCAGTGCTTGGAACTCTTATAAAGGAAGTGAATACTTCTGTTGGTTACATCAAGTATTCAAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005886 GO:0005911 GO:0008150 GO:0009505 GO:0009506 GO:0009719 GO:0009725 GO:0009735 GO:0010033 GO:0012505 GO:0016020 GO:0030054 GO:0030312 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048046 GO:0050896 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin PAN_2

Protein Analysis

462

Amino Acids

51.37

Weight (kDa)

8.61

Isoelectric Point (pI)

29.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016568)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78820 AT1G78830
fragaria_vesca	FvH4_3g18370
malus_domestica	MD11G1262700.v1.1
prunus_persica	Prupe.4G165500_v2.0.a1
pyrus_communis	pycom11g23160
rosa_laevigata	RLG00000033281
rosa_multiflora	Rmu_sc0001523.1_g000002
rosa_roxburghii	Rroxscaffold_1G00049250
rosa_rugosa	Rorug05G0122300
rosa_samantha	Rh5BG214700 Rh5CG238500 Rh5DG219200
rosa_wichuraiana	Rw5G019720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1340
AasI	GACNNNNNNGTC	1 cut(s)	143
AccB1I	GGYRCC	2 cut(s)	825, 1077
AccB7I	CCANNNNNTGG	2 cut(s)	972, 1328
AciI	CCGC	3 cut(s)	292, 797, 800
AclWI	GGATC	1 cut(s)	166
AcoI	YGGCCR	1 cut(s)	553
AcsI	RAATTY	2 cut(s)	128, 485
AdeI	CACNNNGTG	1 cut(s)	325
AfaI	GTAC	1 cut(s)	644
AfiI	CCNNNNNNNGG	5 cut(s)	972, 1092, 1133, 1231, 1328
AgsI	TTSAA	6 cut(s)	80, 109, 134, 649, 999, 1380
AjuI	GAANNNNNNNTTGG	2 cut(s)	717, 749
AloI	GAACNNNNNNTCC	2 cut(s)	354, 386
AluBI	AGCT	7 cut(s)	8, 501, 565, 984, 1002, 1154, 1302
AluI	AGCT	7 cut(s)	8, 501, 565, 984, 1002, 1154, 1302
Alw21I	GWGCWC	4 cut(s)	330, 771, 1123, 1191
Alw26I	GTCTC	3 cut(s)	270, 351, 935
Alw44I	GTGCAC	2 cut(s)	326, 1119
AlwI	GGATC	1 cut(s)	166
AoxI	GGCC	7 cut(s)	283, 336, 553, 602, 936, 1222, 1248
ApaLI	GTGCAC	2 cut(s)	326, 1119
ApeKI	GCWGC	2 cut(s)	5, 690
ApoI	RAATTY	2 cut(s)	128, 485
ArsI	GACNNNNNNTTYG	2 cut(s)	1025, 1057
AspLEI	GCGC	1 cut(s)	796
AspS9I	GGNCC	4 cut(s)	602, 918, 1223, 1248
AsuC2I	CCSGG	1 cut(s)	323
AsuHPI	GGTGA	1 cut(s)	15
AvaII	GGWCC	1 cut(s)	918
BaeGI	GKGCMC	3 cut(s)	330, 1082, 1123
BanI	GGYRCC	2 cut(s)	825, 1077
BauI	CACGAG	1 cut(s)	329
BbsI	GAAGAC	1 cut(s)	141
Bbv12I	GWGCWC	4 cut(s)	330, 771, 1123, 1191
BbvI	GCAGC	2 cut(s)	17, 702
BccI	CCATC	7 cut(s)	65, 263, 380, 584, 917, 1036, 1214
BceAI	ACGGC	2 cut(s)	469, 540
BcnI	CCSGG	1 cut(s)	323
BcoDI	GTCTC	3 cut(s)	270, 351, 935
BfmI	CTRYAG	1 cut(s)	196
BisI	GCNGC	4 cut(s)	6, 691, 797, 800
BlsI	GCNGC	4 cut(s)	7, 692, 798, 801
Bme1390I	CCNGG	1 cut(s)	323
Bme18I	GGWCC	1 cut(s)	918
BmgT120I	GGNCC	4 cut(s)	602, 918, 1223, 1248
BmiI	GGNNCC	5 cut(s)	317, 827, 919, 1079, 1320
BmrFI	CCNGG	1 cut(s)	323
BmrI	ACTGGG	1 cut(s)	455
BmsI	GCATC	2 cut(s)	444, 574
BmuI	ACTGGG	1 cut(s)	455
BpiI	GAAGAC	1 cut(s)	141
BplI	GAGNNNNNCTC	2 cut(s)	971, 1003
BpmI	CTGGAG	1 cut(s)	1305
Bpu10I	CCTNAGC	1 cut(s)	908
BpuEI	CTTGAG	1 cut(s)	917
BpuMI	CCSGG	1 cut(s)	323
BsaAI	YACGTR	1 cut(s)	247
BsaBI	GATNNNNATC	1 cut(s)	1027
BsaJI	CCNNGG	1 cut(s)	121
BsaWI	WCCGGW	1 cut(s)	312
BsaXI	ACNNNNNCTCC	4 cut(s)	15, 45, 1143, 1173
Bsc4I	CCNNNNNNNGG	5 cut(s)	972, 1092, 1133, 1231, 1328
Bse1I	ACTGG	2 cut(s)	450, 1322
Bse3DI	GCAATG	2 cut(s)	859, 902
Bse8I	GATNNNNATC	1 cut(s)	1027
BseDI	CCNNGG	1 cut(s)	121
BseJI	GATNNNNATC	1 cut(s)	1027
BseLI	CCNNNNNNNGG	5 cut(s)	972, 1092, 1133, 1231, 1328
BseMI	GCAATG	2 cut(s)	859, 902
BseMII	CTCAG	1 cut(s)	720
BseNI	ACTGG	2 cut(s)	450, 1322
BseRI	GAGGAG	1 cut(s)	795
BseSI	GKGCMC	3 cut(s)	330, 1082, 1123
BseXI	GCAGC	2 cut(s)	17, 702
BseYI	CCCAGC	2 cut(s)	91, 529
BsgI	GTGCAG	1 cut(s)	1264
BshFI	GGCC	7 cut(s)	285, 338, 555, 604, 938, 1224, 1250
BshNI	GGYRCC	2 cut(s)	825, 1077
BsiHKAI	GWGCWC	4 cut(s)	330, 771, 1123, 1191
BsiSI	CCGG	3 cut(s)	264, 313, 323
BslFI	GGGAC	4 cut(s)	74, 317, 403, 828
BslI	CCNNNNNNNGG	5 cut(s)	972, 1092, 1133, 1231, 1328
BsmAI	GTCTC	3 cut(s)	270, 351, 935
BsmBI	CGTCTC	1 cut(s)	351
BsmFI	GGGAC	4 cut(s)	74, 317, 403, 828
BsnI	GGCC	7 cut(s)	285, 338, 555, 604, 938, 1224, 1250
Bsp1286I	GDGCHC	5 cut(s)	330, 771, 1082, 1123, 1191
Bsp143I	GATC	1 cut(s)	171
BspACI	CCGC	3 cut(s)	292, 797, 800
BspANI	GGCC	7 cut(s)	285, 338, 555, 604, 938, 1224, 1250
BspCNI	CTCAG	1 cut(s)	721
BspHI	TCATGA	1 cut(s)	469
BspLI	GGNNCC	5 cut(s)	317, 827, 919, 1079, 1320
BspPI	GGATC	1 cut(s)	166
BspT107I	GGYRCC	2 cut(s)	825, 1077
BsrDI	GCAATG	2 cut(s)	859, 902
BsrI	ACTGG	2 cut(s)	450, 1322
BssECI	CCNNGG	1 cut(s)	121
BssMI	GATC	1 cut(s)	171
BssSI	CACGAG	1 cut(s)	329
BssT1I	CCWWGG	1 cut(s)	121
Bst2BI	CACGAG	1 cut(s)	329
Bst4CI	ACNGT	5 cut(s)	167, 394, 656, 775, 1214
Bst6I	CTCTTC	3 cut(s)	47, 528, 972
BstBAI	YACGTR	1 cut(s)	247
BstDEI	CTNAG	3 cut(s)	280, 729, 908
BstHHI	GCGC	1 cut(s)	796
BstKTI	GATC	1 cut(s)	174
BstMAI	GTCTC	3 cut(s)	270, 351, 935
BstMBI	GATC	1 cut(s)	171
BstMWI	GCNNNNNNNGC	1 cut(s)	260
BstNSI	RCATGY	1 cut(s)	1069
BstSCI	CCNGG	1 cut(s)	321
BstSFI	CTRYAG	1 cut(s)	196
BstSLI	GKGCMC	3 cut(s)	330, 1082, 1123
BstSNI	TACGTA	1 cut(s)	247
BstV1I	GCAGC	2 cut(s)	17, 702
BstV2I	GAAGAC	1 cut(s)	141
BsuRI	GGCC	7 cut(s)	285, 338, 555, 604, 938, 1224, 1250
BtsI	GCAGTG	1 cut(s)	1145
BtsIMutI	CAGTG	4 cut(s)	661, 771, 1145, 1329
CciI	TCATGA	1 cut(s)	469
CfoI	GCGC	1 cut(s)	796
Cfr13I	GGNCC	4 cut(s)	602, 918, 1223, 1248
CseI	GACGC	1 cut(s)	314
Csp6I	GTAC	1 cut(s)	643
CviAII	CATG	5 cut(s)	289, 470, 640, 972, 1066
CviQI	GTAC	1 cut(s)	643
DdeI	CTNAG	3 cut(s)	280, 729, 908
DpnI	GATC	1 cut(s)	173
DpnII	GATC	1 cut(s)	171
DraIII	CACNNNGTG	1 cut(s)	325
DrdI	GACNNNNNNGTC	1 cut(s)	143
DseDI	GACNNNNNNGTC	1 cut(s)	143
EaeI	YGGCCR	1 cut(s)	553
Eam1104I	CTCTTC	3 cut(s)	47, 528, 972
EarI	CTCTTC	3 cut(s)	47, 528, 972
Eco105I	TACGTA	1 cut(s)	247
Eco130I	CCWWGG	1 cut(s)	121
Eco147I	AGGCCT	2 cut(s)	285, 938
Eco47I	GGWCC	1 cut(s)	918
EcoT14I	CCWWGG	1 cut(s)	121
EcoT22I	ATGCAT	1 cut(s)	187
ErhI	CCWWGG	1 cut(s)	121
Esp3I	CGTCTC	1 cut(s)	351
FaeI	CATG	5 cut(s)	292, 473, 643, 975, 1069
FaqI	GGGAC	4 cut(s)	74, 317, 403, 828
FatI	CATG	5 cut(s)	288, 469, 639, 971, 1065
FauNDI	CATATG	2 cut(s)	491, 1045
Fnu4HI	GCNGC	4 cut(s)	6, 691, 797, 800
Fsp4HI	GCNGC	4 cut(s)	6, 691, 797, 800
GlaI	GCGC	1 cut(s)	795
GluI	GCNGC	4 cut(s)	6, 691, 797, 800
GsaI	CCCAGC	2 cut(s)	95, 533
GsuI	CTGGAG	1 cut(s)	1305
HaeIII	GGCC	7 cut(s)	285, 338, 555, 604, 938, 1224, 1250
HapII	CCGG	3 cut(s)	264, 313, 323
HgaI	GACGC	1 cut(s)	314
HhaI	GCGC	1 cut(s)	796
Hin1II	CATG	5 cut(s)	292, 473, 643, 975, 1069
Hin6I	GCGC	1 cut(s)	794
HinP1I	GCGC	1 cut(s)	794
HindIII	AAGCTT	1 cut(s)	563
HinfI	GANTC	2 cut(s)	239, 1198
HpaII	CCGG	3 cut(s)	264, 313, 323
HphI	GGTGA	1 cut(s)	15
Hpy166II	GTNNAC	4 cut(s)	328, 778, 1121, 1162
Hpy188I	TCNGA	7 cut(s)	260, 273, 377, 583, 598, 922, 1238
Hpy188III	TCNNGA	2 cut(s)	470, 620
Hpy8I	GTNNAC	4 cut(s)	328, 778, 1121, 1162
Hpy99I	CGWCG	2 cut(s)	149, 746
HpyAV	CCTTC	5 cut(s)	115, 202, 328, 623, 1225
HpyCH4III	ACNGT	5 cut(s)	167, 394, 656, 775, 1214
HpyCH4IV	ACGT	3 cut(s)	144, 246, 786
HpyCH4V	TGCA	6 cut(s)	185, 328, 857, 1121, 1245, 1269
HpyF10VI	GCNNNNNNNGC	1 cut(s)	260
HpyF3I	CTNAG	3 cut(s)	280, 729, 908
HpySE526I	ACGT	3 cut(s)	144, 246, 786
Hsp92II	CATG	5 cut(s)	292, 473, 643, 975, 1069
HspAI	GCGC	1 cut(s)	794
Kzo9I	GATC	1 cut(s)	171
LmnI	GCTCC	5 cut(s)	1107, 1151, 1179, 1307, 1324
Lsp1109I	GCAGC	2 cut(s)	17, 702
LweI	GCATC	2 cut(s)	444, 574
MaeII	ACGT	3 cut(s)	144, 246, 786
MaeIII	GTNAC	5 cut(s)	427, 441, 557, 709, 1364
MalI	GATC	1 cut(s)	173
MboI	GATC	1 cut(s)	171
MboII	GAAGA	7 cut(s)	34, 52, 146, 458, 515, 608, 989
MhlI	GDGCHC	5 cut(s)	330, 771, 1082, 1123, 1191
MluCI	AATT	4 cut(s)	12, 128, 485, 750
MlyI	GAGTC	1 cut(s)	1207
MmeI	TCCRAC	2 cut(s)	1085, 1216
MnlI	CCTC	8 cut(s)	59, 296, 373, 680, 813, 816, 839, 1134
Mph1103I	ATGCAT	1 cut(s)	187
MseI	TTAA	2 cut(s)	789, 873
MslI	CAYNNNNRTG	2 cut(s)	1033, 1070
MspI	CCGG	3 cut(s)	264, 313, 323
MspR9I	CCNGG	1 cut(s)	323
MwoI	GCNNNNNNNGC	1 cut(s)	260
NciI	CCSGG	1 cut(s)	323
NdeI	CATATG	2 cut(s)	491, 1045
NdeII	GATC	1 cut(s)	171
NlaIII	CATG	5 cut(s)	292, 473, 643, 975, 1069
NlaIV	GGNNCC	5 cut(s)	317, 827, 919, 1079, 1320
NmuCI	GTSAC	2 cut(s)	427, 709
NsiI	ATGCAT	1 cut(s)	187
NspI	RCATGY	1 cut(s)	1069
PagI	TCATGA	1 cut(s)	469
PceI	AGGCCT	2 cut(s)	285, 938
PcsI	WCGNNNNNNNCGW	1 cut(s)	144
PfeI	GAWTC	1 cut(s)	239
PflMI	CCANNNNNTGG	2 cut(s)	972, 1328
PkrI	GCNGC	4 cut(s)	7, 692, 798, 801
PleI	GAGTC	1 cut(s)	1206
PpsI	GAGTC	1 cut(s)	1206
Ppu21I	YACGTR	1 cut(s)	247
PsiI	TTATAA	1 cut(s)	1340
PspFI	CCCAGC	2 cut(s)	91, 529
PspN4I	GGNNCC	5 cut(s)	317, 827, 919, 1079, 1320
PspPI	GGNCC	4 cut(s)	602, 918, 1223, 1248
RsaI	GTAC	1 cut(s)	644
RsaNI	GTAC	1 cut(s)	643
RseI	CAYNNNNRTG	2 cut(s)	1033, 1070
SaqAI	TTAA	2 cut(s)	789, 873
SatI	GCNGC	4 cut(s)	6, 691, 797, 800
Sau3AI	GATC	1 cut(s)	171
Sau96I	GGNCC	4 cut(s)	602, 918, 1223, 1248
SchI	GAGTC	1 cut(s)	1207
ScrFI	CCNGG	1 cut(s)	323
SduI	GDGCHC	5 cut(s)	330, 771, 1082, 1123, 1191
SfaNI	GCATC	2 cut(s)	444, 574
SfcI	CTRYAG	1 cut(s)	196
SinI	GGWCC	1 cut(s)	918
SmiMI	CAYNNNNRTG	2 cut(s)	1033, 1070
SmlI	CTYRAG	1 cut(s)	932
SmoI	CTYRAG	1 cut(s)	932
SnaBI	TACGTA	1 cut(s)	247
Sse9I	AATT	4 cut(s)	12, 128, 485, 750
SseBI	AGGCCT	2 cut(s)	285, 938
SsiI	CCGC	3 cut(s)	292, 797, 800
StuI	AGGCCT	2 cut(s)	285, 938
StyD4I	CCNGG	1 cut(s)	321
StyI	CCWWGG	1 cut(s)	121
TaaI	ACNGT	5 cut(s)	167, 394, 656, 775, 1214
TaiI	ACGT	3 cut(s)	147, 249, 789
TaqI	TCGA	4 cut(s)	147, 574, 723, 741
TasI	AATT	4 cut(s)	12, 128, 485, 750
TatI	WGTACW	1 cut(s)	642
TauI	GCSGC	2 cut(s)	799, 802
TfiI	GAWTC	1 cut(s)	239
Tru1I	TTAA	2 cut(s)	789, 873
Tru9I	TTAA	2 cut(s)	789, 873
TscAI	CASTG	4 cut(s)	661, 778, 1145, 1329
TseFI	GTSAC	2 cut(s)	427, 709
TseI	GCWGC	2 cut(s)	5, 690
Tsp45I	GTSAC	2 cut(s)	427, 709
TspDTI	ATGAA	4 cut(s)	103, 458, 478, 1244
TspGWI	ACGGA	3 cut(s)	153, 375, 830
TspRI	CASTG	4 cut(s)	661, 778, 1145, 1329
Van91I	CCANNNNNTGG	2 cut(s)	972, 1328
VneI	GTGCAC	2 cut(s)	326, 1119
VpaK11BI	GGWCC	1 cut(s)	918
XapI	RAATTY	2 cut(s)	128, 485
XceI	RCATGY	1 cut(s)	1069
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1312
Zsp2I	ATGCAT	1 cut(s)	187

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.