AT1G78900

V-type proton ATPase catalytic subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0008079
Physical Location & Seq
Forward (+)
29660088 .. 29665078
4991 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G78900.1

Sequence Viewer

Length: 1872 bp
ATGCCGGCGTTTTACGGAGGAAAGCTTACGACCTTCGAGGACGATGAGAAGGAGAGCGAGTATGGTTACGTTCGTAAGGTTTCAGGTCCTGTTGTTGTTGCCGATGGTATGGCCGGTGCTGCTATGTATGAGTTAGTGCGTGTTGGTCATGATAATTTGATTGGTGAAATCATCCGTCTTGAAGGAGATTCTGCCACCATCCAAGTTTACGAGGAAACAGCTGGATTGACAGTTAATGATCCCGTTCTTCGAACACACAAGCCACTTTCTGTGGAGCTCGGGCCAGGAATATTGGGAAATATCTTTGATGGAATTCAGAGGCCTTTGAAGACTATTGCAAGAATATCCGGTGATGTGTACATTCCTCGGGGTGTGTCTGTTCCAGCTCTTGACAAAGATTGTCTTTGGGAGTTCCAGCCCAATAAATTTGTCGAGGGAGACACAATAACTGGTGGTGACTTGTATGCTACTGTCTTTGAGAACACTTTGATGAATCACCTCGTTGCCCTTCCTCCGGATGCCATGGGGAAGATCACTTACATTGCTCCAGCTGGTCAATATTCGCTTAAGGATACCGTGATAGAGCTTGAATTCCAGGGGATCAAGAAATCTTACACCATGCTTCAGAGCTGGCCTGTACGTACGCCTAGGCCAGTTGCATCAAAGCTTGCTGCCGATACTCCTCTACTTACGGGGCAGCGTGTTCTTGATGCCCTTTTCCCTTCTGTTCTTGGTGGAACCTGTGCCATTCCTGGTGCTTTTGGCTGTGGGAAAACTGTTATCAGTCAGGCACTTTCCAAGTACTCCAACTCTGATGCTGTTGTGTATGTTGGTTGTGGAGAGAGAGGAAATGAAATGGCTGAGGTTCTTATGGACTTCCCACAATTGACAATGACGTTGCCTGATGGCCGTGAGGAATCTGTCATGAAACGTACCACACTTGTTGCTAACACCTCTAACATGCCTGTGGCTGCTCGTGAAGCCTCAATTTACACAGGAATCACAATCGCTGAATATTTTAGAGATATGGGCTACAATGTTAGTATGATGGCAGACTCAACTTCCCGTTGGGCAGAAGCATTAAGAGAAATTTCAGGACGGCTGGCTGAAATGCCTGCTGACAGTGGATATCCAGCCTATCTAGCAGCACGTTTAGCATCTTTCTATGAACGTGCTGGTAAAGTAAAATGTCTTGGTGGACCAGAACGTAACGGAAGTGTTACAATTGTTGGTGCAGTTTCGCCTCCTGGAGGAGACTTTTCAGATCCTGTGACTTCAGCAACCCTTAGTATTGTGCAGGTCTTCTGGGGTTTGGACAAAAAGCTTGCCCAGAGAAAACATTTTCCCTCTGTTAATTGGTTGATTTCTTACTCAAAGTATTCAACGGCACTGGAATCTTTCTATGAGAAGTTCGATCCAGATTTCATCAACATCAGGACAAAGGCCAGAGAGGTGTTGCAGAGGGAAGACGATCTTAATGAAATTGTCCAGCTTGTAGGAAAAGATGCGCTAGCAGAAGGGGACAAAATCACATTGGAAACAGCTAAGCTATTGAGGGAAGATTACCTTGCTCAAAACGCGTTTACACCATATGACAAATTCTGTCCTTTCTACAAGTCCGTGTGGATGATGCGTAACATTATCCATTTCTACAACCTAGCCAACCAGGCGGTTGAGAGAGCAGCTGGAATGGACGGTCAAAAGATTACCTACACTCTTATCAAGCATCGCTTAGGAGATCTTTTCTACCGTTTAGTGTCTCAGAAGTTCGAAGACCCAGCAGAAGGGGAGGATACACTGGTGGAAAAATTCAAGAAATTGTACGACGATCTCAATGCTGGATTCCGTGCTTTGGAAGATGAAACTCGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000325 GO:0002020 GO:0003674 GO:0003824 GO:0005215 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005886 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0006950 GO:0006970 GO:0006996 GO:0007030 GO:0007275 GO:0008150 GO:0008324 GO:0009506 GO:0009507 GO:0009526 GO:0009536 GO:0009555 GO:0009628 GO:0009651 GO:0009941 GO:0009987 GO:0010256 GO:0012505 GO:0015075 GO:0015077 GO:0015078 GO:0015318 GO:0015399 GO:0015405 GO:0015672 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0019899 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030054 GO:0030312 GO:0031090 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0034220 GO:0036442 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0044769 GO:0046961 GO:0048046 GO:0048229 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071840 GO:0071944 GO:0090662 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805 GO:0099131 GO:0099132 GO:1902600
KEGG Pathways
Metabolic & Signaling
ko00190 ko01100 ko04145 ko04150 ko04721 ko04966 ko05110 ko05120 ko05323 map00190 map01100 map04145 map04150 map04721 map04966 map05110 map05120 map05323
Pfam Domains
Protein Families
ATP-synt_ab ATP-synt_ab_N ATP-synt_ab_Xtn

Protein Analysis

623

Amino Acids

68.81

Weight (kDa)

5.11

Isoelectric Point (pI)

32.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ATP-synt_ab_N PF02874 25 - 85 3.1e-15 ATP synthase alpha/beta family, beta-barrel domain
ATP-synt_ab_Xtn PF16886 127 - 214 6.4e-27 ATPsynthase alpha/beta subunit barrel-sandwich domain
ATP-synt_ab PF00006 232 - 458 7.4e-75 ATP synthase alpha/beta family, nucleotide-binding domain
ATP-synt_VA_C PF22919 466 - 560 3.4e-29 C-terminal domain of V and A type ATP synthase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1288
AccII CGCG 1 cut(s) 1580
AccIII TCCGGA 1 cut(s) 514
AciI CCGC 1 cut(s) 1670
AclWI GGATC 4 cut(s) 233, 608, 1259, 1409
AcoI YGGCCR 2 cut(s) 111, 907
AcsI RAATTY 6 cut(s) 312, 425, 590, 1089, 1598, 1808
AcuI CTGAAG 2 cut(s) 608, 1260
AfaI GTAC 6 cut(s) 359, 639, 643, 803, 934, 1823
AfiI CCNNNNNNNGG 4 cut(s) 514, 1250, 1784, 1852
AflII CTTAAG 1 cut(s) 566
AflIII ACRYGT 1 cut(s) 1578
AgsI TTSAA 5 cut(s) 182, 328, 590, 1383, 1813
AjnI CCWGG 5 cut(s) 283, 594, 751, 1246, 1665
Alw21I GWGCWC 1 cut(s) 279
Alw26I GTCTC 3 cut(s) 432, 1248, 1764
AlwI GGATC 4 cut(s) 233, 608, 1259, 1409
AlwNI CAGNNNCTG 2 cut(s) 89, 1268
Ama87I CYCGRG 2 cut(s) 278, 366
Aor13HI TCCGGA 1 cut(s) 514
AoxI GGCC 7 cut(s) 111, 281, 320, 632, 650, 907, 1443
ApeKI GCWGC 6 cut(s) 119, 671, 697, 971, 1145, 1682
ApoI RAATTY 6 cut(s) 312, 425, 590, 1089, 1598, 1808
AspA2I CCTAGG 1 cut(s) 647
AspLEI GCGC 1 cut(s) 1510
AspS9I GGNCC 3 cut(s) 86, 281, 1199
AsuHPI GGTGA 4 cut(s) 176, 362, 467, 488
AsuII TTCGAA 2 cut(s) 250, 1770
AsuNHI GCTAGC 1 cut(s) 1510
AvaI CYCGRG 2 cut(s) 278, 366
AvaII GGWCC 2 cut(s) 86, 1199
AvrII CCTAGG 1 cut(s) 647
BaeI ACNNNNGTAYC 2 cut(s) 1785, 1818
BanII GRGCYC 1 cut(s) 279
BarI GAAGNNNNNNTAC 2 cut(s) 521, 553
BauI CACGAG 1 cut(s) 975
BbsI GAAGAC 4 cut(s) 335, 1294, 1473, 1779
Bbv12I GWGCWC 1 cut(s) 279
BbvCI CCTCAGC 1 cut(s) 861
BbvI GCAGC 6 cut(s) 106, 658, 709, 958, 1157, 1694
BccI CCATC 5 cut(s) 98, 206, 302, 899, 1042
BceAI ACGGC 3 cut(s) 894, 1115, 1401
BcgI CGANNNNNNTGC 2 cut(s) 1817, 1851
BciT130I CCWGG 5 cut(s) 285, 596, 753, 1248, 1667
BciVI GTATCC 2 cut(s) 565, 1786
BcoDI GTCTC 3 cut(s) 432, 1248, 1764
BfaI CTAG 4 cut(s) 648, 1142, 1511, 1658
BfrI CTTAAG 1 cut(s) 566
BfuAI ACCTGC 1 cut(s) 1288
BfuI GTATCC 2 cut(s) 565, 1786
BglI GCCNNNNNGGC 1 cut(s) 1667
BglII AGATCT 1 cut(s) 1738
BisI GCNGC 6 cut(s) 120, 672, 698, 972, 1146, 1683
BlnI CCTAGG 1 cut(s) 647
BlpI GCTNAGC 1 cut(s) 1545
BlsI GCNGC 6 cut(s) 121, 673, 699, 973, 1147, 1684
BmcAI AGTACT 1 cut(s) 803
Bme1390I CCNGG 5 cut(s) 285, 596, 753, 1248, 1667
Bme18I GGWCC 2 cut(s) 86, 1199
BmeT110I CYCGRG 2 cut(s) 278, 366
BmgT120I GGNCC 3 cut(s) 86, 281, 1199
BmiI GGNNCC 1 cut(s) 739
BmrFI CCNGG 5 cut(s) 285, 596, 753, 1248, 1667
BmsI GCATC 8 cut(s) 508, 668, 700, 805, 1166, 1495, 1620, 1735
BmtI GCTAGC 1 cut(s) 1514
BpiI GAAGAC 4 cut(s) 335, 1294, 1473, 1779
BpmI CTGGAG 2 cut(s) 531, 1269
Bpu10I CCTNAGC 2 cut(s) 861, 1732
Bpu1102I GCTNAGC 1 cut(s) 1545
Bpu14I TTCGAA 2 cut(s) 250, 1770
BsaAI YACGTR 1 cut(s) 641
BsaJI CCNNGG 4 cut(s) 365, 522, 595, 647
BsaWI WCCGGW 2 cut(s) 347, 514
BsaXI ACNNNNNCTCC 2 cut(s) 44, 74
Bsc4I CCNNNNNNNGG 4 cut(s) 514, 1250, 1784, 1852
Bse118I RCCGGY 2 cut(s) 4, 113
Bse1I ACTGG 4 cut(s) 454, 653, 1395, 1803
Bse3DI GCAATG 1 cut(s) 540
BseAI TCCGGA 1 cut(s) 514
BseBI CCWGG 5 cut(s) 285, 596, 753, 1248, 1667
BseDI CCNNGG 4 cut(s) 365, 522, 595, 647
BseGI GGATG 4 cut(s) 171, 198, 523, 1632
BseLI CCNNNNNNNGG 4 cut(s) 514, 1250, 1784, 1852
BseMI GCAATG 1 cut(s) 540
BseMII CTCAG 2 cut(s) 852, 1775
BseNI ACTGG 4 cut(s) 454, 653, 1395, 1803
BseRI GAGGAG 2 cut(s) 672, 1266
BseXI GCAGC 6 cut(s) 106, 658, 709, 958, 1157, 1694
BseYI CCCAGC 1 cut(s) 1777
BsgI GTGCAG 2 cut(s) 1254, 1316
Bsh1236I CGCG 1 cut(s) 1580
BshFI GGCC 7 cut(s) 113, 283, 322, 634, 652, 909, 1445
BsiHKAI GWGCWC 1 cut(s) 279
BsiHKCI CYCGRG 2 cut(s) 278, 366
BsiSI CCGG 4 cut(s) 5, 114, 348, 515
BsiWI CGTACG 1 cut(s) 641
BslFI GGGAC 1 cut(s) 1535
BslI CCNNNNNNNGG 4 cut(s) 514, 1250, 1784, 1852
BsmAI GTCTC 3 cut(s) 432, 1248, 1764
BsmFI GGGAC 1 cut(s) 1535
BsnI GGCC 7 cut(s) 113, 283, 322, 634, 652, 909, 1445
BsoBI CYCGRG 2 cut(s) 278, 366
Bsp119I TTCGAA 2 cut(s) 250, 1770
Bsp1286I GDGCHC 1 cut(s) 279
Bsp13I TCCGGA 1 cut(s) 514
Bsp1407I TGTACA 1 cut(s) 357
Bsp143I GATC 8 cut(s) 238, 531, 600, 1264, 1414, 1471, 1738, 1828
Bsp1720I GCTNAGC 1 cut(s) 1545
Bsp19I CCATGG 1 cut(s) 522
BspACI CCGC 1 cut(s) 1670
BspANI GGCC 7 cut(s) 113, 283, 322, 634, 652, 909, 1445
BspCNI CTCAG 2 cut(s) 853, 1774
BspEI TCCGGA 1 cut(s) 514
BspFNI CGCG 1 cut(s) 1580
BspHI TCATGA 2 cut(s) 148, 924
BspLI GGNNCC 1 cut(s) 739
BspMI ACCTGC 1 cut(s) 1288
BspOI GCTAGC 1 cut(s) 1514
BspPI GGATC 4 cut(s) 233, 608, 1259, 1409
BspT104I TTCGAA 2 cut(s) 250, 1770
BspTI CTTAAG 1 cut(s) 566
BsrDI GCAATG 1 cut(s) 540
BsrFI RCCGGY 2 cut(s) 4, 113
BsrGI TGTACA 1 cut(s) 357
BsrI ACTGG 4 cut(s) 454, 653, 1395, 1803
BssAI RCCGGY 2 cut(s) 4, 113
BssECI CCNNGG 4 cut(s) 365, 522, 595, 647
BssMI GATC 8 cut(s) 238, 531, 600, 1264, 1414, 1471, 1738, 1828
BssSI CACGAG 1 cut(s) 975
BssT1I CCWWGG 2 cut(s) 522, 647
Bst2BI CACGAG 1 cut(s) 975
Bst2UI CCWGG 5 cut(s) 285, 596, 753, 1248, 1667
Bst4CI ACNGT 7 cut(s) 232, 472, 577, 778, 1124, 1697, 1751
BstAFI CTTAAG 1 cut(s) 566
BstAUI TGTACA 1 cut(s) 357
BstBAI YACGTR 1 cut(s) 641
BstBI TTCGAA 2 cut(s) 250, 1770
BstC8I GCNNGC 7 cut(s) 6, 632, 669, 1104, 1116, 1326, 1512
BstDEI CTNAG 5 cut(s) 861, 1286, 1545, 1732, 1761
BstDSI CCRYGG 1 cut(s) 522
BstENI CCTNNNNNAGG 1 cut(s) 1248
BstF5I GGATG 4 cut(s) 171, 198, 523, 1632
BstFNI CGCG 1 cut(s) 1580
BstHHI GCGC 1 cut(s) 1510
BstKTI GATC 8 cut(s) 241, 534, 603, 1267, 1417, 1474, 1741, 1831
BstMAI GTCTC 3 cut(s) 432, 1248, 1764
BstMBI GATC 8 cut(s) 238, 531, 600, 1264, 1414, 1471, 1738, 1828
BstMWI GCNNNNNNNGC 6 cut(s) 119, 980, 1142, 1154, 1577, 1667
BstNI CCWGG 5 cut(s) 285, 596, 753, 1248, 1667
BstNSI RCATGY 1 cut(s) 964
BstSCI CCNGG 5 cut(s) 283, 594, 751, 1246, 1665
BstSNI TACGTA 1 cut(s) 641
BstUI CGCG 1 cut(s) 1580
BstV1I GCAGC 6 cut(s) 106, 658, 709, 958, 1157, 1694
BstV2I GAAGAC 4 cut(s) 335, 1294, 1473, 1779
BstX2I RGATCY 2 cut(s) 1264, 1738
BstYI RGATCY 2 cut(s) 1264, 1738
BsuI GTATCC 2 cut(s) 565, 1786
BsuRI GGCC 7 cut(s) 113, 283, 322, 634, 652, 909, 1445
BtgI CCRYGG 1 cut(s) 522
BtgZI GCGATG 1 cut(s) 1712
BtsCI GGATG 4 cut(s) 171, 198, 523, 1632
BtsIMutI CAGTG 3 cut(s) 1129, 1388, 1796
BveI ACCTGC 1 cut(s) 1288
Cac8I GCNNGC 7 cut(s) 6, 632, 669, 1104, 1116, 1326, 1512
CaiI CAGNNNCTG 2 cut(s) 89, 1268
CciI TCATGA 2 cut(s) 148, 924
CfoI GCGC 1 cut(s) 1510
Cfr10I RCCGGY 2 cut(s) 4, 113
Cfr13I GGNCC 3 cut(s) 86, 281, 1199
Csp6I GTAC 6 cut(s) 358, 638, 642, 802, 933, 1822
CspCI CAANNNNNGTGG 2 cut(s) 925, 960
CviAII CATG 5 cut(s) 149, 523, 619, 925, 961
CviQI GTAC 6 cut(s) 358, 638, 642, 802, 933, 1822
DdeI CTNAG 5 cut(s) 861, 1286, 1545, 1732, 1761
DpnI GATC 8 cut(s) 240, 533, 602, 1266, 1416, 1473, 1740, 1830
DpnII GATC 8 cut(s) 238, 531, 600, 1264, 1414, 1471, 1738, 1828
EaeI YGGCCR 2 cut(s) 111, 907
Ecl136II GAGCTC 1 cut(s) 277
Eco105I TACGTA 1 cut(s) 641
Eco130I CCWWGG 2 cut(s) 522, 647
Eco147I AGGCCT 1 cut(s) 322
Eco24I GRGCYC 1 cut(s) 279
Eco32I GATATC 1 cut(s) 1130
Eco47I GGWCC 2 cut(s) 86, 1199
Eco53kI GAGCTC 1 cut(s) 277
Eco57I CTGAAG 2 cut(s) 608, 1260
Eco88I CYCGRG 2 cut(s) 278, 366
EcoICRI GAGCTC 1 cut(s) 277
EcoNI CCTNNNNNAGG 1 cut(s) 1248
EcoO109I RGGNCCY 1 cut(s) 86
EcoRI GAATTC 2 cut(s) 312, 590
EcoRII CCWGG 5 cut(s) 283, 594, 751, 1246, 1665
EcoRV GATATC 1 cut(s) 1130
EcoT14I CCWWGG 2 cut(s) 522, 647
EcoT38I GRGCYC 1 cut(s) 279
ErhI CCWWGG 2 cut(s) 522, 647
FaeI CATG 5 cut(s) 152, 526, 622, 928, 964
FalI AAGNNNNNCTT 8 cut(s) 387, 419, 1458, 1490, 1551, 1583, 1715, 1747
FaqI GGGAC 1 cut(s) 1535
FatI CATG 5 cut(s) 148, 522, 618, 924, 960
FauNDI CATATG 1 cut(s) 1591
Fnu4HI GCNGC 6 cut(s) 120, 672, 698, 972, 1146, 1683
FokI GGATG 4 cut(s) 158, 185, 530, 1639
FriOI GRGCYC 1 cut(s) 279
Fsp4HI GCNGC 6 cut(s) 120, 672, 698, 972, 1146, 1683
FspBI CTAG 4 cut(s) 648, 1142, 1511, 1658
GlaI GCGC 1 cut(s) 1509
GluI GCNGC 6 cut(s) 120, 672, 698, 972, 1146, 1683
GsaI CCCAGC 1 cut(s) 1781
GsuI CTGGAG 2 cut(s) 531, 1269
HaeIII GGCC 7 cut(s) 113, 283, 322, 634, 652, 909, 1445
HapII CCGG 4 cut(s) 5, 114, 348, 515
HhaI GCGC 1 cut(s) 1510
Hin1II CATG 5 cut(s) 152, 526, 622, 928, 964
Hin6I GCGC 1 cut(s) 1508
HinP1I GCGC 1 cut(s) 1508
HindIII AAGCTT 3 cut(s) 23, 665, 1322
HinfI GANTC 7 cut(s) 188, 493, 917, 999, 1055, 1394, 1842
HpaII CCGG 4 cut(s) 5, 114, 348, 515
HphI GGTGA 4 cut(s) 176, 362, 467, 488
Hpy166II GTNNAC 4 cut(s) 208, 358, 1199, 1584
Hpy188I TCNGA 5 cut(s) 318, 627, 814, 1264, 1764
Hpy8I GTNNAC 4 cut(s) 208, 358, 1199, 1584
Hpy99I CGWCG 1 cut(s) 1829
HpyAV CCTTC 7 cut(s) 43, 43, 176, 518, 732, 1511, 1778
HpyCH4III ACNGT 7 cut(s) 232, 472, 577, 778, 1124, 1697, 1751
HpyCH4IV ACGT 7 cut(s) 69, 640, 896, 931, 1150, 1171, 1207
HpyCH4V TGCA 5 cut(s) 338, 659, 1235, 1297, 1459
HpyF10VI GCNNNNNNNGC 6 cut(s) 119, 980, 1142, 1154, 1577, 1667
HpyF3I CTNAG 5 cut(s) 861, 1286, 1545, 1732, 1761
HpySE526I ACGT 7 cut(s) 69, 640, 896, 931, 1150, 1171, 1207
Hsp92II CATG 5 cut(s) 152, 526, 622, 928, 964
HspAI GCGC 1 cut(s) 1508
Kpn2I TCCGGA 1 cut(s) 514
KroI GCCGGC 1 cut(s) 4
KroNI GCCGGC 1 cut(s) 6
Kzo9I GATC 8 cut(s) 238, 531, 600, 1264, 1414, 1471, 1738, 1828
LmnI GCTCC 2 cut(s) 274, 550
Lsp1109I GCAGC 6 cut(s) 106, 658, 709, 958, 1157, 1694
LweI GCATC 8 cut(s) 508, 668, 700, 805, 1166, 1495, 1620, 1735
MaeI CTAG 4 cut(s) 648, 1142, 1511, 1658
MaeII ACGT 7 cut(s) 69, 640, 896, 931, 1150, 1171, 1207
MaeIII GTNAC 6 cut(s) 65, 455, 1208, 1219, 1270, 1634
MalI GATC 8 cut(s) 240, 533, 602, 1266, 1416, 1473, 1740, 1830
MboI GATC 8 cut(s) 238, 531, 600, 1264, 1414, 1471, 1738, 1828
MboII GAAGA 8 cut(s) 239, 340, 541, 1294, 1478, 1571, 1784, 1868
MfeI CAATTG 2 cut(s) 884, 1224
MflI RGATCY 2 cut(s) 1264, 1738
MhlI GDGCHC 1 cut(s) 279
MluI ACGCGT 1 cut(s) 1578
MlyI GAGTC 1 cut(s) 1049
MmeI TCCRAC 1 cut(s) 831
MroI TCCGGA 1 cut(s) 514
MroNI GCCGGC 1 cut(s) 4
MseI TTAA 5 cut(s) 234, 567, 1082, 1353, 1476
MslI CAYNNNNRTG 2 cut(s) 488, 965
MspA1I CMGCKG 3 cut(s) 221, 551, 1685
MspCI CTTAAG 1 cut(s) 566
MspI CCGG 4 cut(s) 5, 114, 348, 515
MspR9I CCNGG 5 cut(s) 285, 596, 753, 1248, 1667
MunI CAATTG 2 cut(s) 884, 1224
MvaI CCWGG 5 cut(s) 285, 596, 753, 1248, 1667
MvnI CGCG 1 cut(s) 1580
MwoI GCNNNNNNNGC 6 cut(s) 119, 980, 1142, 1154, 1577, 1667
NaeI GCCGGC 1 cut(s) 6
NcoI CCATGG 1 cut(s) 522
NdeI CATATG 1 cut(s) 1591
NdeII GATC 8 cut(s) 238, 531, 600, 1264, 1414, 1471, 1738, 1828
NgoMIV GCCGGC 1 cut(s) 4
NheI GCTAGC 1 cut(s) 1510
NlaIII CATG 5 cut(s) 152, 526, 622, 928, 964
NlaIV GGNNCC 1 cut(s) 739
NmuCI GTSAC 2 cut(s) 455, 1270
NspI RCATGY 1 cut(s) 964
NspV TTCGAA 2 cut(s) 250, 1770
PagI TCATGA 2 cut(s) 148, 924
PceI AGGCCT 1 cut(s) 322
PdiI GCCGGC 1 cut(s) 6
PfeI GAWTC 6 cut(s) 188, 493, 917, 999, 1394, 1842
Pfl23II CGTACG 1 cut(s) 641
PfoI TCCNGGA 1 cut(s) 1246
PkrI GCNGC 6 cut(s) 121, 673, 699, 973, 1147, 1684
PleI GAGTC 1 cut(s) 1049
PpsI GAGTC 1 cut(s) 1049
Ppu21I YACGTR 1 cut(s) 641
PpuMI RGGWCCY 1 cut(s) 86
Psp124BI GAGCTC 1 cut(s) 279
Psp5II RGGWCCY 1 cut(s) 86
Psp6I CCWGG 5 cut(s) 283, 594, 751, 1246, 1665
PspFI CCCAGC 1 cut(s) 1777
PspGI CCWGG 5 cut(s) 283, 594, 751, 1246, 1665
PspLI CGTACG 1 cut(s) 641
PspN4I GGNNCC 1 cut(s) 739
PspPI GGNCC 3 cut(s) 86, 281, 1199
PspPPI RGGWCCY 1 cut(s) 86
PstNI CAGNNNCTG 2 cut(s) 89, 1268
PsuI RGATCY 2 cut(s) 1264, 1738
PvuII CAGCTG 3 cut(s) 221, 551, 1685
RsaI GTAC 6 cut(s) 359, 639, 643, 803, 934, 1823
RsaNI GTAC 6 cut(s) 358, 638, 642, 802, 933, 1822
RseI CAYNNNNRTG 2 cut(s) 488, 965
SacI GAGCTC 1 cut(s) 279
SaqAI TTAA 5 cut(s) 234, 567, 1082, 1353, 1476
SatI GCNGC 6 cut(s) 120, 672, 698, 972, 1146, 1683
Sau3AI GATC 8 cut(s) 238, 531, 600, 1264, 1414, 1471, 1738, 1828
Sau96I GGNCC 3 cut(s) 86, 281, 1199
ScaI AGTACT 1 cut(s) 803
SchI GAGTC 1 cut(s) 1049
ScrFI CCNGG 5 cut(s) 285, 596, 753, 1248, 1667
SduI GDGCHC 1 cut(s) 279
SfaNI GCATC 8 cut(s) 508, 668, 700, 805, 1166, 1495, 1620, 1735
SfuI TTCGAA 2 cut(s) 250, 1770
SinI GGWCC 2 cut(s) 86, 1199
SmiMI CAYNNNNRTG 2 cut(s) 488, 965
SmlI CTYRAG 1 cut(s) 566
SmoI CTYRAG 1 cut(s) 566
SnaBI TACGTA 1 cut(s) 641
SseBI AGGCCT 1 cut(s) 322
SsiI CCGC 1 cut(s) 1670
SspI AATATT 3 cut(s) 291, 560, 1016
SspMI CTAG 4 cut(s) 648, 1142, 1511, 1658
SstI GAGCTC 1 cut(s) 279
StuI AGGCCT 1 cut(s) 322
StyD4I CCNGG 5 cut(s) 283, 594, 751, 1246, 1665
StyI CCWWGG 2 cut(s) 522, 647
TaaI ACNGT 7 cut(s) 232, 472, 577, 778, 1124, 1697, 1751
TaiI ACGT 7 cut(s) 72, 643, 899, 934, 1153, 1174, 1210
TaqI TCGA 5 cut(s) 36, 250, 432, 1413, 1770
TatI WGTACW 2 cut(s) 357, 801
TfiI GAWTC 6 cut(s) 188, 493, 917, 999, 1394, 1842
Tru1I TTAA 5 cut(s) 234, 567, 1082, 1353, 1476
Tru9I TTAA 5 cut(s) 234, 567, 1082, 1353, 1476
TscAI CASTG 3 cut(s) 1129, 1395, 1803
TseFI GTSAC 2 cut(s) 455, 1270
TseI GCWGC 6 cut(s) 119, 671, 697, 971, 1145, 1682
Tsp45I GTSAC 2 cut(s) 455, 1270
TspDTI ATGAA 6 cut(s) 506, 867, 941, 1182, 1414, 1494
TspGWI ACGGA 5 cut(s) 30, 164, 1227, 1609, 1835
TspRI CASTG 3 cut(s) 1129, 1395, 1803
Vha464I CTTAAG 1 cut(s) 566
VpaK11BI GGWCC 2 cut(s) 86, 1199
XagI CCTNNNNNAGG 1 cut(s) 1248
XapI RAATTY 6 cut(s) 312, 425, 590, 1089, 1598, 1808
XceI RCATGY 1 cut(s) 964
XmaJI CCTAGG 1 cut(s) 647
XspI CTAG 4 cut(s) 648, 1142, 1511, 1658
ZrmI AGTACT 1 cut(s) 803
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.