AT1G78995

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0014391
Physical Location & Seq
Reverse (-)
29715072 .. 29716255
1184 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G78995.1

Sequence Viewer

Length: 480 bp
ATGATAATACACTGTCCTTCGTCATCTCTCTATCGCGCGAAATTGTTATACAACAGAGGTAGTAGTAAATCTCATCAGTGTCAGTGTCAGAGTCGCTTGGTGACTCGATCTGCGGCTGTTCGTATATCCACGGCGACGATCGGGGCTATAGCCGCGGCGGTTATGATGGCTGCTGTGTCCGTAGCTTCAGCAGAGCTTCCACCGCCGCCGCAAGATGGAGAAACGTTATCTAACGTACCGCAAACGCTGTCAGGGGAAGACTGTAAGAAACAGAGGATCCAACGACCAAAATCCAAAAACGCAGAGAAATGTACAGTCAAATGCGTAAACACTTGCATTCGCAGCGGAGACGGAGAAGGACCGATCAATATCAGAAGGCCATTAGTGGTATTCAAGCAAGGATTTCGTAGCCGTAATTACTGCTTAGTGGAATGCTCGGATATATGCAATTTGATCGGAGATGGTGACTATGGTCCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

159

Amino Acids

17.16

Weight (kDa)

9.21

Isoelectric Point (pI)

51.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014391)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G78995
fragaria_vesca FvH4_6g36350 FvH4_6g36350
malus_domestica MD09G1169800.v1.1
prunus_persica Prupe.3G028000_v2.0.a1
pyrus_communis pycom09g08730
rosa_chinensis RchiOBHm_Chr2g0148351
rosa_laevigata RLG00000020342
rosa_multiflora Rmu_sc0011136.1_g000003
rosa_roxburghii Rroxscaffold_2G00098840
rosa_rugosa Rorug02G0406000 Rorug02G0406000
rosa_samantha Rh2AG465100 Rh2BG477700 Rh2CG451500 Rh2DG486600
rosa_wichuraiana Rw2G037900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 36, 38, 155
AciI CCGC 9 cut(s) 113, 153, 155, 158, 203, 206, 209, 239, 345
AclI AACGTT 1 cut(s) 224
AclWI GGATC 2 cut(s) 271, 284
AcuI CTGAAG 1 cut(s) 171
AfaI GTAC 2 cut(s) 237, 313
AfiI CCNNNNNNNGG 1 cut(s) 215
AgsI TTSAA 1 cut(s) 394
AluBI AGCT 2 cut(s) 185, 196
AluI AGCT 2 cut(s) 185, 196
Alw26I GTCTC 1 cut(s) 342
AlwI GGATC 2 cut(s) 271, 284
AoxI GGCC 1 cut(s) 377
ApeKI GCWGC 2 cut(s) 170, 342
AspLEI GCGC 1 cut(s) 38
AspS9I GGNCC 2 cut(s) 359, 473
AsuHPI GGTGA 2 cut(s) 112, 476
AvaII GGWCC 2 cut(s) 359, 473
BamHI GGATCC 1 cut(s) 276
BbsI GAAGAC 1 cut(s) 264
BbvI GCAGC 2 cut(s) 157, 354
BccI CCATC 3 cut(s) 160, 209, 455
BceAI ACGGC 2 cut(s) 147, 396
BcgI CGANNNNNNTGC 4 cut(s) 386, 420, 436, 470
BcoDI GTCTC 1 cut(s) 342
BfmI CTRYAG 1 cut(s) 147
BisI GCNGC 7 cut(s) 114, 153, 156, 171, 206, 209, 343
BlsI GCNGC 7 cut(s) 115, 154, 157, 172, 207, 210, 344
Bme18I GGWCC 2 cut(s) 359, 473
BmgT120I GGNCC 2 cut(s) 359, 473
BmiI GGNNCC 2 cut(s) 278, 475
BoxI GACNNNNGTC 1 cut(s) 471
BpiI GAAGAC 1 cut(s) 264
BsaBI GATNNNNATC 1 cut(s) 368
BsaJI CCNNGG 2 cut(s) 129, 153
Bsc4I CCNNNNNNNGG 1 cut(s) 215
Bse8I GATNNNNATC 1 cut(s) 368
BseDI CCNNGG 2 cut(s) 129, 153
BseJI GATNNNNATC 1 cut(s) 368
BseLI CCNNNNNNNGG 1 cut(s) 215
BseXI GCAGC 2 cut(s) 157, 354
Bsh1236I CGCG 3 cut(s) 36, 38, 155
Bsh1285I CGRYCG 1 cut(s) 141
BshFI GGCC 1 cut(s) 379
BsiEI CGRYCG 1 cut(s) 141
BslFI GGGAC 1 cut(s) 459
BslI CCNNNNNNNGG 1 cut(s) 215
BsmAI GTCTC 1 cut(s) 342
BsmBI CGTCTC 1 cut(s) 342
BsmFI GGGAC 1 cut(s) 459
BsmI GAATGC 2 cut(s) 336, 437
BsnI GGCC 1 cut(s) 379
Bsp1407I TGTACA 1 cut(s) 311
Bsp143I GATC 5 cut(s) 107, 138, 276, 363, 453
BspACI CCGC 9 cut(s) 113, 153, 155, 158, 203, 206, 209, 239, 345
BspANI GGCC 1 cut(s) 379
BspFNI CGCG 3 cut(s) 36, 38, 155
BspLI GGNNCC 2 cut(s) 278, 475
BspPI GGATC 2 cut(s) 271, 284
BsrGI TGTACA 1 cut(s) 311
BssECI CCNNGG 2 cut(s) 129, 153
BssMI GATC 5 cut(s) 107, 138, 276, 363, 453
Bst4CI ACNGT 3 cut(s) 14, 263, 316
BstAUI TGTACA 1 cut(s) 311
BstDEI CTNAG 1 cut(s) 424
BstDSI CCRYGG 2 cut(s) 129, 153
BstFNI CGCG 3 cut(s) 36, 38, 155
BstHHI GCGC 1 cut(s) 38
BstKTI GATC 5 cut(s) 110, 141, 279, 366, 456
BstMAI GTCTC 1 cut(s) 342
BstMBI GATC 5 cut(s) 107, 138, 276, 363, 453
BstMCI CGRYCG 1 cut(s) 141
BstMWI GCNNNNNNNGC 3 cut(s) 152, 202, 342
BstPAI GACNNNNGTC 1 cut(s) 471
BstSFI CTRYAG 1 cut(s) 147
BstUI CGCG 3 cut(s) 36, 38, 155
BstV1I GCAGC 2 cut(s) 157, 354
BstV2I GAAGAC 1 cut(s) 264
BstX2I RGATCY 1 cut(s) 276
BstYI RGATCY 1 cut(s) 276
BsuRI GGCC 1 cut(s) 379
BtgI CCRYGG 2 cut(s) 129, 153
BtsIMutI CAGTG 3 cut(s) 10, 83, 89
CfoI GCGC 1 cut(s) 38
Cfr13I GGNCC 2 cut(s) 359, 473
Cfr42I CCGCGG 1 cut(s) 156
Csp6I GTAC 2 cut(s) 236, 312
CviJI RGCY 8 cut(s) 116, 146, 152, 170, 185, 196, 379, 411
CviKI_1 RGCY 8 cut(s) 116, 146, 152, 170, 185, 196, 379, 411
CviQI GTAC 2 cut(s) 236, 312
DdeI CTNAG 1 cut(s) 424
DpnI GATC 5 cut(s) 109, 140, 278, 365, 455
DpnII GATC 5 cut(s) 107, 138, 276, 363, 453
Eco47I GGWCC 2 cut(s) 359, 473
Eco57I CTGAAG 1 cut(s) 171
Esp3I CGTCTC 1 cut(s) 342
FaiI YATR 7 cut(s) 49, 125, 149, 164, 443, 445, 471
FaqI GGGAC 1 cut(s) 459
Fnu4HI GCNGC 7 cut(s) 114, 153, 156, 171, 206, 209, 343
Fsp4HI GCNGC 7 cut(s) 114, 153, 156, 171, 206, 209, 343
GlaI GCGC 1 cut(s) 37
GluI GCNGC 7 cut(s) 114, 153, 156, 171, 206, 209, 343
HaeIII GGCC 1 cut(s) 379
HhaI GCGC 1 cut(s) 38
Hin6I GCGC 1 cut(s) 36
HinP1I GCGC 1 cut(s) 36
HinfI GANTC 2 cut(s) 91, 103
HphI GGTGA 2 cut(s) 112, 476
Hpy166II GTNNAC 1 cut(s) 328
Hpy188I TCNGA 4 cut(s) 90, 374, 439, 458
Hpy8I GTNNAC 1 cut(s) 328
Hpy99I CGWCG 1 cut(s) 139
HpyAV CCTTC 3 cut(s) 27, 350, 369
HpyCH4III ACNGT 3 cut(s) 14, 263, 316
HpyCH4IV ACGT 2 cut(s) 224, 234
HpyCH4V TGCA 2 cut(s) 336, 447
HpyF10VI GCNNNNNNNGC 3 cut(s) 152, 202, 342
HpyF3I CTNAG 1 cut(s) 424
HpySE526I ACGT 2 cut(s) 224, 234
HspAI GCGC 1 cut(s) 36
KspI CCGCGG 1 cut(s) 156
Kzo9I GATC 5 cut(s) 107, 138, 276, 363, 453
LpnPI CCDG 1 cut(s) 237
Lsp1109I GCAGC 2 cut(s) 157, 354
MaeII ACGT 2 cut(s) 224, 234
MaeIII GTNAC 2 cut(s) 100, 464
MalI GATC 5 cut(s) 109, 140, 278, 365, 455
MboI GATC 5 cut(s) 107, 138, 276, 363, 453
MboII GAAGA 1 cut(s) 269
MflI RGATCY 1 cut(s) 276
MluCI AATT 3 cut(s) 41, 415, 448
MlyI GAGTC 2 cut(s) 97, 100
MmeI TCCRAC 1 cut(s) 304
MnlI CCTC 2 cut(s) 50, 267
MspA1I CMGCKG 2 cut(s) 155, 345
Mva1269I GAATGC 2 cut(s) 336, 437
MvnI CGCG 3 cut(s) 36, 38, 155
MwoI GCNNNNNNNGC 3 cut(s) 152, 202, 342
NdeII GATC 5 cut(s) 107, 138, 276, 363, 453
NlaIV GGNNCC 2 cut(s) 278, 475
NmuCI GTSAC 2 cut(s) 100, 464
PctI GAATGC 2 cut(s) 336, 437
PkrI GCNGC 7 cut(s) 115, 154, 157, 172, 207, 210, 344
Ple19I CGATCG 1 cut(s) 141
PleI GAGTC 2 cut(s) 97, 99
PpsI GAGTC 2 cut(s) 97, 99
PshAI GACNNNNGTC 1 cut(s) 471
Psp1406I AACGTT 1 cut(s) 224
PspN4I GGNNCC 2 cut(s) 278, 475
PspPI GGNCC 2 cut(s) 359, 473
PsuI RGATCY 1 cut(s) 276
PvuI CGATCG 1 cut(s) 141
RsaI GTAC 2 cut(s) 237, 313
RsaNI GTAC 2 cut(s) 236, 312
SacII CCGCGG 1 cut(s) 156
SatI GCNGC 7 cut(s) 114, 153, 156, 171, 206, 209, 343
Sau3AI GATC 5 cut(s) 107, 138, 276, 363, 453
Sau96I GGNCC 2 cut(s) 359, 473
SchI GAGTC 2 cut(s) 97, 100
SetI ASST 5 cut(s) 61, 187, 198, 227, 237
SfcI CTRYAG 1 cut(s) 147
Sfr303I CCGCGG 1 cut(s) 156
SgrBI CCGCGG 1 cut(s) 156
SinI GGWCC 2 cut(s) 359, 473
Sse9I AATT 3 cut(s) 41, 415, 448
SsiI CCGC 9 cut(s) 113, 153, 155, 158, 203, 206, 209, 239, 345
TaaI ACNGT 3 cut(s) 14, 263, 316
TaiI ACGT 2 cut(s) 227, 237
TaqI TCGA 1 cut(s) 106
TaqII GACCGA 1 cut(s) 376
TasI AATT 3 cut(s) 41, 415, 448
TatI WGTACW 1 cut(s) 311
TauI GCSGC 5 cut(s) 116, 155, 158, 208, 211
TscAI CASTG 3 cut(s) 17, 83, 89
TseFI GTSAC 2 cut(s) 100, 464
TseI GCWGC 2 cut(s) 170, 342
Tsp45I GTSAC 2 cut(s) 100, 464
TspGWI ACGGA 2 cut(s) 169, 366
TspRI CASTG 3 cut(s) 17, 83, 89
VpaK11BI GGWCC 2 cut(s) 359, 473
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.