MD09G1169800.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0014391
Physical Location & Seq
Reverse (-)
14182403 .. 14184467
2065 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1169800.v1.1.491

Sequence Viewer

Length: 531 bp
ATGCTAATTTATTATGTCCCAACTTCTCCATTCCTTCTCAATAAAATCCCACCACAACTTGAAAAAACCAACATCGCCAACAAGATTAACAAAGCCAATGGTATTACCATCAGAAGCACTTCCCAAGCCACCAGCAGCAGCAGCAGAAGAAGCAGAAGCAGAAGCTTTCTCTTAGCAACTGCAGGGTTTCTTGCAGCTGCTGCAGTTTTAGCTTCTGCCGGTGCAGTTGAGTCTCCTGAGCAATCTGAGACTCTAGAAAATATTCCCCAGACACTGTCTGGAGAGTGTGCTTTGCCCAAGGATTGCAAGAAACCAAGGATTCAAAGACCAAAGTCGAGAAAGGCAGAGTCTTGCACAATTAAGTGCGTCACCACCTGCATTAGAGGCGGTGAGGGCTCACCTGGTGAAGGCCCCTTCAATGTCAGGAGGCCTATAGTTGTTTTCAAGCAAGGATTTAGAAGCCGGCAATATTGTTTGGTGGAGTGCTCAGATATTTGCAATTTAATTAAAGATGGTGACGACGGGCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

177

Amino Acids

19.04

Weight (kDa)

9.43

Isoelectric Point (pI)

76.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014391)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G78995
fragaria_vesca FvH4_6g36350 FvH4_6g36350
malus_domestica MD09G1169800.v1.1
prunus_persica Prupe.3G028000_v2.0.a1
pyrus_communis pycom09g08730
rosa_chinensis RchiOBHm_Chr2g0148351
rosa_laevigata RLG00000020342
rosa_multiflora Rmu_sc0011136.1_g000003
rosa_roxburghii Rroxscaffold_2G00098840
rosa_rugosa Rorug02G0406000 Rorug02G0406000
rosa_samantha Rh2AG465100 Rh2BG477700 Rh2CG451500 Rh2DG486600
rosa_wichuraiana Rw2G037900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 383
Acc36I ACCTGC 1 cut(s) 383
AciI CCGC 1 cut(s) 387
AdeI CACNNNGTG 1 cut(s) 404
AfiI CCNNNNNNNGG 1 cut(s) 407
AgsI TTSAA 4 cut(s) 62, 323, 418, 445
AjnI CCWGG 1 cut(s) 400
AluBI AGCT 3 cut(s) 165, 197, 212
AluI AGCT 3 cut(s) 165, 197, 212
Alw21I GWGCWC 1 cut(s) 488
Alw26I GTCTC 2 cut(s) 237, 242
AlwNI CAGNNNCTG 2 cut(s) 200, 274
AoxI GGCC 3 cut(s) 409, 428, 524
ApeKI GCWGC 6 cut(s) 135, 138, 141, 194, 197, 200
Asp700I GAANNNNTTC 2 cut(s) 118, 261
AspS9I GGNCC 2 cut(s) 410, 524
AsuHPI GGTGA 5 cut(s) 361, 390, 401, 416, 527
BanII GRGCYC 1 cut(s) 398
Bbv12I GWGCWC 1 cut(s) 488
BbvI GCAGC 6 cut(s) 147, 150, 153, 184, 187, 206
BccI CCATC 2 cut(s) 116, 506
BciT130I CCWGG 1 cut(s) 402
BcoDI GTCTC 2 cut(s) 237, 242
BfaI CTAG 1 cut(s) 254
BfmI CTRYAG 3 cut(s) 180, 201, 432
BfuAI ACCTGC 1 cut(s) 383
BisI GCNGC 6 cut(s) 136, 139, 142, 195, 198, 201
BlsI GCNGC 6 cut(s) 137, 140, 143, 196, 199, 202
Bme1390I CCNGG 1 cut(s) 402
BmgT120I GGNCC 2 cut(s) 410, 524
BmiI GGNNCC 1 cut(s) 412
BmrFI CCNGG 1 cut(s) 402
BoxI GACNNNNGTC 1 cut(s) 331
BpmI CTGGAG 1 cut(s) 300
Bpu10I CCTNAGC 1 cut(s) 237
BsaJI CCNNGG 2 cut(s) 297, 314
Bsc4I CCNNNNNNNGG 1 cut(s) 407
Bse118I RCCGGY 2 cut(s) 218, 462
BseBI CCWGG 1 cut(s) 402
BseDI CCNNGG 2 cut(s) 297, 314
BseLI CCNNNNNNNGG 1 cut(s) 407
BseMII CTCAG 3 cut(s) 228, 237, 501
BseXI GCAGC 6 cut(s) 147, 150, 153, 184, 187, 206
BsgI GTGCAG 1 cut(s) 243
BshFI GGCC 3 cut(s) 411, 430, 526
BsiHKAI GWGCWC 1 cut(s) 488
BsiSI CCGG 2 cut(s) 219, 463
BslFI GGGAC 1 cut(s) 2
BslI CCNNNNNNNGG 1 cut(s) 407
BsmAI GTCTC 2 cut(s) 237, 242
BsmFI GGGAC 1 cut(s) 2
BsnI GGCC 3 cut(s) 411, 430, 526
Bsp1286I GDGCHC 2 cut(s) 398, 488
BspACI CCGC 1 cut(s) 387
BspANI GGCC 3 cut(s) 411, 430, 526
BspCNI CTCAG 3 cut(s) 229, 238, 500
BspLI GGNNCC 1 cut(s) 412
BspMAI CTGCAG 2 cut(s) 184, 205
BspMI ACCTGC 1 cut(s) 383
BsrFI RCCGGY 2 cut(s) 218, 462
BssAI RCCGGY 2 cut(s) 218, 462
BssECI CCNNGG 2 cut(s) 297, 314
BssT1I CCWWGG 2 cut(s) 297, 314
Bst2UI CCWGG 1 cut(s) 402
Bst4CI ACNGT 1 cut(s) 276
BstAPI GCANNNNNTGC 1 cut(s) 200
BstC8I GCNNGC 1 cut(s) 464
BstDEI CTNAG 4 cut(s) 172, 237, 246, 487
BstENI CCTNNNNNAGG 1 cut(s) 405
BstMAI GTCTC 2 cut(s) 237, 242
BstMWI GCNNNNNNNGC 6 cut(s) 141, 150, 200, 209, 384, 393
BstNI CCWGG 1 cut(s) 402
BstPAI GACNNNNGTC 1 cut(s) 331
BstSCI CCNGG 1 cut(s) 400
BstSFI CTRYAG 3 cut(s) 180, 201, 432
BstV1I GCAGC 6 cut(s) 147, 150, 153, 184, 187, 206
BsuRI GGCC 3 cut(s) 411, 430, 526
BtgZI GCGATG 1 cut(s) 58
BtsIMutI CAGTG 1 cut(s) 272
BveI ACCTGC 1 cut(s) 383
Cac8I GCNNGC 1 cut(s) 464
CaiI CAGNNNCTG 2 cut(s) 200, 274
Cfr10I RCCGGY 2 cut(s) 218, 462
Cfr13I GGNCC 2 cut(s) 410, 524
CseI GACGC 1 cut(s) 355
CsiI ACCWGGT 1 cut(s) 400
DdeI CTNAG 4 cut(s) 172, 237, 246, 487
DraIII CACNNNGTG 1 cut(s) 404
Eco130I CCWWGG 2 cut(s) 297, 314
Eco147I AGGCCT 1 cut(s) 430
Eco24I GRGCYC 1 cut(s) 398
EcoNI CCTNNNNNAGG 1 cut(s) 405
EcoO109I RGGNCCY 1 cut(s) 410
EcoRII CCWGG 1 cut(s) 400
EcoT14I CCWWGG 2 cut(s) 297, 314
EcoT38I GRGCYC 1 cut(s) 398
ErhI CCWWGG 2 cut(s) 297, 314
FaiI YATR 2 cut(s) 15, 434
FaqI GGGAC 1 cut(s) 2
Fnu4HI GCNGC 6 cut(s) 136, 139, 142, 195, 198, 201
FriOI GRGCYC 1 cut(s) 398
Fsp4HI GCNGC 6 cut(s) 136, 139, 142, 195, 198, 201
FspBI CTAG 1 cut(s) 254
GluI GCNGC 6 cut(s) 136, 139, 142, 195, 198, 201
GsuI CTGGAG 1 cut(s) 300
HaeIII GGCC 3 cut(s) 411, 430, 526
HapII CCGG 2 cut(s) 219, 463
HgaI GACGC 1 cut(s) 355
HindIII AAGCTT 1 cut(s) 163
HinfI GANTC 4 cut(s) 230, 250, 319, 347
HpaII CCGG 2 cut(s) 219, 463
HphI GGTGA 5 cut(s) 361, 390, 401, 416, 527
Hpy188I TCNGA 3 cut(s) 113, 247, 490
Hpy188III TCNNGA 5 cut(s) 236, 254, 279, 336, 424
Hpy99I CGWCG 1 cut(s) 524
HpyAV CCTTC 3 cut(s) 44, 401, 424
HpyCH4III ACNGT 1 cut(s) 276
HpyCH4V TGCA 8 cut(s) 182, 194, 203, 224, 306, 354, 378, 498
HpyF10VI GCNNNNNNNGC 6 cut(s) 141, 150, 200, 209, 384, 393
HpyF3I CTNAG 4 cut(s) 172, 237, 246, 487
KroI GCCGGC 1 cut(s) 462
KroNI GCCGGC 1 cut(s) 464
Lsp1109I GCAGC 6 cut(s) 147, 150, 153, 184, 187, 206
MabI ACCWGGT 1 cut(s) 400
MaeI CTAG 1 cut(s) 254
MaeIII GTNAC 2 cut(s) 367, 515
MboII GAAGA 1 cut(s) 159
MhlI GDGCHC 2 cut(s) 398, 488
MluCI AATT 4 cut(s) 6, 357, 499, 504
MlyI GAGTC 3 cut(s) 239, 244, 356
MnlI CCTC 3 cut(s) 377, 385, 420
MroNI GCCGGC 1 cut(s) 462
MroXI GAANNNNTTC 2 cut(s) 118, 261
MseI TTAA 5 cut(s) 87, 360, 503, 507, 529
MspA1I CMGCKG 1 cut(s) 197
MspI CCGG 2 cut(s) 219, 463
MspR9I CCNGG 1 cut(s) 402
MvaI CCWGG 1 cut(s) 402
MwoI GCNNNNNNNGC 6 cut(s) 141, 150, 200, 209, 384, 393
NaeI GCCGGC 1 cut(s) 464
NgoMIV GCCGGC 1 cut(s) 462
NlaIV GGNNCC 1 cut(s) 412
NmuCI GTSAC 2 cut(s) 367, 515
PacI TTAATTAA 1 cut(s) 507
PaqCI CACCTGC 1 cut(s) 383
PceI AGGCCT 1 cut(s) 430
PdiI GCCGGC 1 cut(s) 464
PdmI GAANNNNTTC 2 cut(s) 118, 261
PfeI GAWTC 1 cut(s) 319
PflFI GACNNNGTC 1 cut(s) 274
PkrI GCNGC 6 cut(s) 137, 140, 143, 196, 199, 202
PleI GAGTC 3 cut(s) 238, 244, 355
PpsI GAGTC 3 cut(s) 238, 244, 355
PshAI GACNNNNGTC 1 cut(s) 331
Psp6I CCWGG 1 cut(s) 400
PspGI CCWGG 1 cut(s) 400
PspN4I GGNNCC 1 cut(s) 412
PspPI GGNCC 2 cut(s) 410, 524
PstI CTGCAG 2 cut(s) 184, 205
PstNI CAGNNNCTG 2 cut(s) 200, 274
PsyI GACNNNGTC 1 cut(s) 274
PvuII CAGCTG 1 cut(s) 197
SaqAI TTAA 5 cut(s) 87, 360, 503, 507, 529
SatI GCNGC 6 cut(s) 136, 139, 142, 195, 198, 201
Sau96I GGNCC 2 cut(s) 410, 524
SchI GAGTC 3 cut(s) 239, 244, 356
ScrFI CCNGG 1 cut(s) 402
SduI GDGCHC 2 cut(s) 398, 488
SetI ASST 5 cut(s) 167, 199, 214, 377, 403
SexAI ACCWGGT 1 cut(s) 400
SfcI CTRYAG 3 cut(s) 180, 201, 432
Sse9I AATT 4 cut(s) 6, 357, 499, 504
SseBI AGGCCT 1 cut(s) 430
SsiI CCGC 1 cut(s) 387
SspI AATATT 2 cut(s) 262, 470
SspMI CTAG 1 cut(s) 254
StuI AGGCCT 1 cut(s) 430
StyD4I CCNGG 1 cut(s) 400
StyI CCWWGG 2 cut(s) 297, 314
TaaI ACNGT 1 cut(s) 276
TaqI TCGA 1 cut(s) 335
TasI AATT 4 cut(s) 6, 357, 499, 504
TfiI GAWTC 1 cut(s) 319
Tru1I TTAA 5 cut(s) 87, 360, 503, 507, 529
Tru9I TTAA 5 cut(s) 87, 360, 503, 507, 529
TscAI CASTG 1 cut(s) 279
TseFI GTSAC 2 cut(s) 367, 515
TseI GCWGC 6 cut(s) 135, 138, 141, 194, 197, 200
Tsp45I GTSAC 2 cut(s) 367, 515
TspRI CASTG 1 cut(s) 279
Tth111I GACNNNGTC 1 cut(s) 274
XagI CCTNNNNNAGG 1 cut(s) 405
XbaI TCTAGA 1 cut(s) 253
XcmI CCANNNNNNNNNTGG 1 cut(s) 275
XmnI GAANNNNTTC 2 cut(s) 118, 261
XspI CTAG 1 cut(s) 254
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.