Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0014391

Physical Location & Seq

Genomic Coordinates Reverse (-)

2095413 .. 2096890

Gene Structure 1478 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G028000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGCTAATTTATGGCCCAAAAACTCCAACCCTTGTCCATAAAATCCCACAGCCCTTTGGAGGACAAGTCAACATTAGCACCAACAAGATTAATATAGCAAATGACATCAACCTCAGATTCAGAAGAAGCACTTGTCATCTCACCAGAGCCACCACCAGCACCAACAGCACCAGCACCGGCAGAAGCAGAAGCATTCTCTTAGCAACTGCAGGCTTGCTTGCAGCTGCTGCAGTGATAACTTCAGCTTCAGCAGCAATGGAGTCTCCTGAGAATTCCGAGACTCTCTCCAACATACCCCAGACTCTATCTGGTGAGTGTGCTTTGCCCACAGATTGCAAGAAGGCAAGAATTCAAAGACCAAAATCAAGAAAGGCAGAGTCTTGCACTATCAAGTGTGTCACCACTTGCATCAGAGGAGGTGATGGCTCACCTGGTGAAGGCCCCTTCAATGTCAGAAGGCCTCTGGTTGTTTTCAAGCAAGGATTCAGAAGTCGTCAATATTGTTTGGTGGAGTGCTCAGATATTTGCAATTTGATTAAGGATGGTGACGATGGGCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

187

Amino Acids

19.94

Weight (kDa)

9.41

Isoelectric Point (pI)

63.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0014391)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78995
fragaria_vesca	FvH4_6g36350 FvH4_6g36350
malus_domestica	MD09G1169800.v1.1
prunus_persica	Prupe.3G028000_v2.0.a1
pyrus_communis	pycom09g08730
rosa_chinensis	RchiOBHm_Chr2g0148351
rosa_laevigata	RLG00000020342
rosa_multiflora	Rmu_sc0011136.1_g000003
rosa_roxburghii	Rroxscaffold_2G00098840
rosa_rugosa	Rorug02G0406000 Rorug02G0406000
rosa_samantha	Rh2AG465100 Rh2BG477700 Rh2CG451500 Rh2DG486600
rosa_wichuraiana	Rw2G037900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	271, 348
AcuI	CTGAAG	2 cut(s)	225, 231
AdeI	CACNNNGTG	1 cut(s)	434
AfiI	CCNNNNNNNGG	2 cut(s)	59, 437
AgsI	TTSAA	3 cut(s)	353, 448, 475
AjnI	CCWGG	1 cut(s)	430
AluBI	AGCT	2 cut(s)	224, 245
AluI	AGCT	2 cut(s)	224, 245
Alw21I	GWGCWC	1 cut(s)	518
Alw26I	GTCTC	2 cut(s)	267, 272
AlwNI	CAGNNNCTG	1 cut(s)	227
AoxI	GGCC	4 cut(s)	13, 439, 458, 554
ApeKI	GCWGC	4 cut(s)	221, 224, 227, 251
ApoI	RAATTY	2 cut(s)	271, 348
AseI	ATTAAT	1 cut(s)	90
AspS9I	GGNCC	3 cut(s)	14, 440, 554
AsuHPI	GGTGA	7 cut(s)	133, 323, 391, 420, 431, 446, 557
Bbv12I	GWGCWC	1 cut(s)	518
BbvI	GCAGC	4 cut(s)	211, 214, 233, 263
BccI	CCATC	3 cut(s)	416, 536, 545
BciT130I	CCWGG	1 cut(s)	432
BcoDI	GTCTC	2 cut(s)	267, 272
BfmI	CTRYAG	2 cut(s)	207, 228
BisI	GCNGC	4 cut(s)	222, 225, 228, 252
BlsI	GCNGC	4 cut(s)	223, 226, 229, 253
Bme1390I	CCNGG	1 cut(s)	432
BmgT120I	GGNCC	3 cut(s)	14, 440, 554
BmiI	GGNNCC	1 cut(s)	442
BmrFI	CCNGG	1 cut(s)	432
BmsI	GCATC	1 cut(s)	417
BplI	GAGNNNNNCTC	2 cut(s)	269, 301
BsaXI	ACNNNNNCTCC	2 cut(s)	51, 81
Bsc4I	CCNNNNNNNGG	2 cut(s)	59, 437
Bse118I	RCCGGY	1 cut(s)	176
Bse3DI	GCAATG	1 cut(s)	261
BseBI	CCWGG	1 cut(s)	432
BseGI	GGATG	1 cut(s)	547
BseLI	CCNNNNNNNGG	2 cut(s)	59, 437
BseMI	GCAATG	1 cut(s)	261
BseMII	CTCAG	3 cut(s)	127, 258, 531
BseRI	GAGGAG	1 cut(s)	429
BseXI	GCAGC	4 cut(s)	211, 214, 233, 263
BshFI	GGCC	4 cut(s)	15, 441, 460, 556
BsiHKAI	GWGCWC	1 cut(s)	518
BsiSI	CCGG	1 cut(s)	177
BslI	CCNNNNNNNGG	2 cut(s)	59, 437
BsmAI	GTCTC	2 cut(s)	267, 272
BsmI	GAATGC	1 cut(s)	192
BsnI	GGCC	4 cut(s)	15, 441, 460, 556
Bsp1286I	GDGCHC	1 cut(s)	518
BspANI	GGCC	4 cut(s)	15, 441, 460, 556
BspCNI	CTCAG	3 cut(s)	126, 259, 530
BspLI	GGNNCC	1 cut(s)	442
BspMAI	CTGCAG	2 cut(s)	211, 232
BsrDI	GCAATG	1 cut(s)	261
BsrFI	RCCGGY	1 cut(s)	176
BssAI	RCCGGY	1 cut(s)	176
Bst2UI	CCWGG	1 cut(s)	432
BstAPI	GCANNNNNTGC	1 cut(s)	227
BstC8I	GCNNGC	3 cut(s)	211, 215, 219
BstDEI	CTNAG	4 cut(s)	113, 199, 267, 517
BstENI	CCTNNNNNAGG	1 cut(s)	435
BstF5I	GGATG	1 cut(s)	547
BstMAI	GTCTC	2 cut(s)	267, 272
BstMWI	GCNNNNNNNGC	3 cut(s)	165, 227, 251
BstNI	CCWGG	1 cut(s)	432
BstSCI	CCNGG	1 cut(s)	430
BstSFI	CTRYAG	2 cut(s)	207, 228
BstV1I	GCAGC	4 cut(s)	211, 214, 233, 263
BsuRI	GGCC	4 cut(s)	15, 441, 460, 556
BtsCI	GGATG	1 cut(s)	547
BtsI	GCAGTG	1 cut(s)	237
BtsIMutI	CAGTG	1 cut(s)	237
Cac8I	GCNNGC	3 cut(s)	211, 215, 219
CaiI	CAGNNNCTG	1 cut(s)	227
Cfr10I	RCCGGY	1 cut(s)	176
Cfr13I	GGNCC	3 cut(s)	14, 440, 554
CsiI	ACCWGGT	1 cut(s)	430
DdeI	CTNAG	4 cut(s)	113, 199, 267, 517
DraIII	CACNNNGTG	1 cut(s)	434
Eco147I	AGGCCT	1 cut(s)	460
Eco57I	CTGAAG	2 cut(s)	225, 231
EcoNI	CCTNNNNNAGG	1 cut(s)	435
EcoO109I	RGGNCCY	1 cut(s)	440
EcoRI	GAATTC	2 cut(s)	271, 348
EcoRII	CCWGG	1 cut(s)	430
FaiI	YATR	4 cut(s)	12, 39, 95, 293
FalI	AAGNNNNNCTT	2 cut(s)	115, 147
Fnu4HI	GCNGC	4 cut(s)	222, 225, 228, 252
FokI	GGATG	1 cut(s)	554
Fsp4HI	GCNGC	4 cut(s)	222, 225, 228, 252
GluI	GCNGC	4 cut(s)	222, 225, 228, 252
HaeIII	GGCC	4 cut(s)	15, 441, 460, 556
HapII	CCGG	1 cut(s)	177
HincII	GTYRAC	1 cut(s)	70
HindII	GTYRAC	1 cut(s)	70
HinfI	GANTC	6 cut(s)	117, 260, 280, 301, 377, 483
HpaII	CCGG	1 cut(s)	177
HphI	GGTGA	7 cut(s)	133, 323, 391, 420, 431, 446, 557
Hpy166II	GTNNAC	1 cut(s)	70
Hpy188I	TCNGA	7 cut(s)	116, 122, 277, 413, 455, 488, 520
Hpy188III	TCNNGA	2 cut(s)	266, 366
Hpy8I	GTNNAC	1 cut(s)	70
HpyAV	CCTTC	4 cut(s)	334, 431, 450, 454
HpyCH4V	TGCA	7 cut(s)	209, 221, 230, 336, 384, 408, 528
HpyF10VI	GCNNNNNNNGC	3 cut(s)	165, 227, 251
HpyF3I	CTNAG	4 cut(s)	113, 199, 267, 517
Lsp1109I	GCAGC	4 cut(s)	211, 214, 233, 263
LweI	GCATC	1 cut(s)	417
MabI	ACCWGGT	1 cut(s)	430
MaeIII	GTNAC	2 cut(s)	397, 545
MboII	GAAGA	1 cut(s)	135
MhlI	GDGCHC	1 cut(s)	518
MluCI	AATT	4 cut(s)	6, 271, 348, 529
MlyI	GAGTC	4 cut(s)	269, 274, 295, 386
MmeI	TCCRAC	2 cut(s)	50, 312
MnlI	CCTC	5 cut(s)	53, 122, 407, 410, 471
MseI	TTAA	2 cut(s)	90, 537
MspA1I	CMGCKG	1 cut(s)	224
MspI	CCGG	1 cut(s)	177
MspR9I	CCNGG	1 cut(s)	432
Mva1269I	GAATGC	1 cut(s)	192
MvaI	CCWGG	1 cut(s)	432
MwoI	GCNNNNNNNGC	3 cut(s)	165, 227, 251
NlaIV	GGNNCC	1 cut(s)	442
NmuCI	GTSAC	2 cut(s)	397, 545
PceI	AGGCCT	1 cut(s)	460
PctI	GAATGC	1 cut(s)	192
PfeI	GAWTC	2 cut(s)	117, 483
PkrI	GCNGC	4 cut(s)	223, 226, 229, 253
PleI	GAGTC	4 cut(s)	268, 274, 295, 385
PpsI	GAGTC	4 cut(s)	268, 274, 295, 385
PshBI	ATTAAT	1 cut(s)	90
Psp6I	CCWGG	1 cut(s)	430
PspGI	CCWGG	1 cut(s)	430
PspN4I	GGNNCC	1 cut(s)	442
PspPI	GGNCC	3 cut(s)	14, 440, 554
PstI	CTGCAG	2 cut(s)	211, 232
PstNI	CAGNNNCTG	1 cut(s)	227
PvuII	CAGCTG	1 cut(s)	224
SaqAI	TTAA	2 cut(s)	90, 537
SatI	GCNGC	4 cut(s)	222, 225, 228, 252
Sau96I	GGNCC	3 cut(s)	14, 440, 554
SchI	GAGTC	4 cut(s)	269, 274, 295, 386
ScrFI	CCNGG	1 cut(s)	432
SduI	GDGCHC	1 cut(s)	518
SetI	ASST	5 cut(s)	114, 226, 247, 421, 433
SexAI	ACCWGGT	1 cut(s)	430
SfaNI	GCATC	1 cut(s)	417
SfcI	CTRYAG	2 cut(s)	207, 228
Sse9I	AATT	4 cut(s)	6, 271, 348, 529
SseBI	AGGCCT	1 cut(s)	460
SspI	AATATT	1 cut(s)	500
StuI	AGGCCT	1 cut(s)	460
StyD4I	CCNGG	1 cut(s)	430
TasI	AATT	4 cut(s)	6, 271, 348, 529
TfiI	GAWTC	2 cut(s)	117, 483
Tru1I	TTAA	2 cut(s)	90, 537
Tru9I	TTAA	2 cut(s)	90, 537
TscAI	CASTG	1 cut(s)	237
TseFI	GTSAC	2 cut(s)	397, 545
TseI	GCWGC	4 cut(s)	221, 224, 227, 251
Tsp45I	GTSAC	2 cut(s)	397, 545
TspRI	CASTG	1 cut(s)	237
VspI	ATTAAT	1 cut(s)	90
XagI	CCTNNNNNAGG	1 cut(s)	435
XapI	RAATTY	2 cut(s)	271, 348
XcmI	CCANNNNNNNNNTGG	1 cut(s)	305

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.