Rh2CG451500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0014391
Physical Location & Seq
Forward (+)
61288626 .. 61289470
845 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG451500.1

Sequence Viewer

Length: 495 bp
ATGCTAATTTATGGCTCAACTACTCCAATTCTACTTAATACAATCAACACCAACAACAAGAAGGCTAATGGCATCATCATCAGAAGCACTTCCCAGTTTGCAAGAGCAAGCAGAAGTTGCATTGTAGCAACTGCAGGGTTGCTTGCAACTGCTGCAGTGTTAGCTTCAGCTGCATCAATAGGTCTTGCAATCGAGTCCCCTGAACAAGGTGATACTCTAGCCAACATACCGCAGACGCTATCCGGTGAGTGCATTTTGCCCAAGGATTGCAAGAAAGCTCGGATTCAAAAGCCGAAATCAAGAAAAGCGGAGTCTTGCACAATCAAGTGTGTAACTACTTGTATCAGGGGCGGCGAGGGATCACCCGGTGAAGGCCCCTTCAATGTCAGAAGACCTATAGTTGTTTTCAAGCAAGGCTTCCGAAGCCGTCAATACTGTTTGGTGGAGTGCTCAGATATATGTAATCTGATTCGAGATGGTGACGATGGGCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

164

Amino Acids

17.41

Weight (kDa)

9.18

Isoelectric Point (pI)

54.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014391)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G78995
fragaria_vesca FvH4_6g36350 FvH4_6g36350
malus_domestica MD09G1169800.v1.1
prunus_persica Prupe.3G028000_v2.0.a1
pyrus_communis pycom09g08730
rosa_chinensis RchiOBHm_Chr2g0148351
rosa_laevigata RLG00000020342
rosa_multiflora Rmu_sc0011136.1_g000003
rosa_roxburghii Rroxscaffold_2G00098840
rosa_rugosa Rorug02G0406000 Rorug02G0406000
rosa_samantha Rh2AG465100 Rh2BG477700 Rh2CG451500 Rh2DG486600
rosa_wichuraiana Rw2G037900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 230, 308, 351
AclWI GGATC 1 cut(s) 367
AcuI CTGAAG 1 cut(s) 150
AdeI CACNNNGTG 1 cut(s) 368
AfiI CCNNNNNNNGG 2 cut(s) 206, 371
AgsI TTSAA 3 cut(s) 287, 382, 409
AluBI AGCT 3 cut(s) 164, 170, 278
AluI AGCT 3 cut(s) 164, 170, 278
Alw21I GWGCWC 1 cut(s) 452
AlwI GGATC 1 cut(s) 367
AoxI GGCC 2 cut(s) 373, 488
ApeKI GCWGC 2 cut(s) 152, 170
Asp700I GAANNNNTTC 1 cut(s) 88
AspS9I GGNCC 2 cut(s) 374, 488
AsuC2I CCSGG 1 cut(s) 366
AsuHPI GGTGA 5 cut(s) 221, 257, 354, 380, 491
BbsI GAAGAC 1 cut(s) 397
Bbv12I GWGCWC 1 cut(s) 452
BbvI GCAGC 2 cut(s) 139, 157
BccI CCATC 2 cut(s) 470, 479
BceAI ACGGC 1 cut(s) 411
BcnI CCSGG 1 cut(s) 366
BfaI CTAG 1 cut(s) 218
BfmI CTRYAG 3 cut(s) 132, 153, 396
BisI GCNGC 3 cut(s) 153, 171, 352
BlsI GCNGC 3 cut(s) 154, 172, 353
Bme1390I CCNGG 1 cut(s) 366
BmgT120I GGNCC 2 cut(s) 374, 488
BmiI GGNNCC 1 cut(s) 376
BmrFI CCNGG 1 cut(s) 366
BmrI ACTGGG 1 cut(s) 88
BmsI GCATC 2 cut(s) 81, 182
BmuI ACTGGG 1 cut(s) 88
BpiI GAAGAC 1 cut(s) 397
BpuMI CCSGG 1 cut(s) 366
BsaJI CCNNGG 1 cut(s) 261
BsaWI WCCGGW 1 cut(s) 242
Bsc4I CCNNNNNNNGG 2 cut(s) 206, 371
Bse1I ACTGG 1 cut(s) 94
BseDI CCNNGG 1 cut(s) 261
BseLI CCNNNNNNNGG 2 cut(s) 206, 371
BseMII CTCAG 1 cut(s) 465
BseNI ACTGG 1 cut(s) 94
BseXI GCAGC 2 cut(s) 139, 157
BshFI GGCC 2 cut(s) 375, 490
BsiHKAI GWGCWC 1 cut(s) 452
BsiSI CCGG 2 cut(s) 243, 366
BslFI GGGAC 1 cut(s) 181
BslI CCNNNNNNNGG 2 cut(s) 206, 371
BsmFI GGGAC 1 cut(s) 181
BsnI GGCC 2 cut(s) 375, 490
Bsp1286I GDGCHC 1 cut(s) 452
Bsp143I GATC 1 cut(s) 359
BspACI CCGC 3 cut(s) 230, 308, 351
BspANI GGCC 2 cut(s) 375, 490
BspCNI CTCAG 1 cut(s) 464
BspLI GGNNCC 1 cut(s) 376
BspMAI CTGCAG 2 cut(s) 136, 157
BspPI GGATC 1 cut(s) 367
BsrI ACTGG 1 cut(s) 94
BssECI CCNNGG 1 cut(s) 261
BssMI GATC 1 cut(s) 359
BssT1I CCWWGG 1 cut(s) 261
Bst4CI ACNGT 1 cut(s) 437
BstAPI GCANNNNNTGC 2 cut(s) 117, 152
BstC8I GCNNGC 2 cut(s) 109, 144
BstDEI CTNAG 1 cut(s) 451
BstENI CCTNNNNNAGG 1 cut(s) 204
BstKTI GATC 1 cut(s) 362
BstMBI GATC 1 cut(s) 359
BstMWI GCNNNNNNNGC 5 cut(s) 117, 152, 161, 170, 423
BstSCI CCNGG 1 cut(s) 364
BstSFI CTRYAG 3 cut(s) 132, 153, 396
BstV1I GCAGC 2 cut(s) 139, 157
BstV2I GAAGAC 1 cut(s) 397
BsuRI GGCC 2 cut(s) 375, 490
BtsI GCAGTG 1 cut(s) 162
BtsIMutI CAGTG 1 cut(s) 162
Cac8I GCNNGC 2 cut(s) 109, 144
Cfr13I GGNCC 2 cut(s) 374, 488
CseI GACGC 1 cut(s) 244
DdeI CTNAG 1 cut(s) 451
DpnI GATC 1 cut(s) 361
DpnII GATC 1 cut(s) 359
DraIII CACNNNGTG 1 cut(s) 368
Eco130I CCWWGG 1 cut(s) 261
Eco57I CTGAAG 1 cut(s) 150
EcoNI CCTNNNNNAGG 1 cut(s) 204
EcoO109I RGGNCCY 1 cut(s) 374
EcoT14I CCWWGG 1 cut(s) 261
ErhI CCWWGG 1 cut(s) 261
FaiI YATR 5 cut(s) 12, 227, 398, 458, 460
FalI AAGNNNNNCTT 2 cut(s) 401, 433
FaqI GGGAC 1 cut(s) 181
Fnu4HI GCNGC 3 cut(s) 153, 171, 352
Fsp4HI GCNGC 3 cut(s) 153, 171, 352
FspBI CTAG 1 cut(s) 218
GluI GCNGC 3 cut(s) 153, 171, 352
HaeIII GGCC 2 cut(s) 375, 490
HapII CCGG 2 cut(s) 243, 366
HgaI GACGC 1 cut(s) 244
HinfI GANTC 4 cut(s) 194, 283, 311, 469
HpaII CCGG 2 cut(s) 243, 366
HphI GGTGA 5 cut(s) 221, 257, 354, 380, 491
Hpy188I TCNGA 6 cut(s) 83, 282, 389, 422, 454, 468
Hpy188III TCNNGA 2 cut(s) 300, 473
HpyAV CCTTC 3 cut(s) 55, 365, 388
HpyCH4III ACNGT 1 cut(s) 437
HpyF10VI GCNNNNNNNGC 5 cut(s) 117, 152, 161, 170, 423
HpyF3I CTNAG 1 cut(s) 451
Kzo9I GATC 1 cut(s) 359
LpnPI CCDG 6 cut(s) 107, 120, 213, 256, 331, 379
Lsp1109I GCAGC 2 cut(s) 139, 157
LweI GCATC 2 cut(s) 81, 182
MaeI CTAG 1 cut(s) 218
MaeIII GTNAC 2 cut(s) 331, 479
MalI GATC 1 cut(s) 361
MboI GATC 1 cut(s) 359
MboII GAAGA 1 cut(s) 402
MhlI GDGCHC 1 cut(s) 452
MluCI AATT 2 cut(s) 6, 27
MlyI GAGTC 2 cut(s) 203, 320
MnlI CCTC 1 cut(s) 349
MroXI GAANNNNTTC 1 cut(s) 88
MseI TTAA 2 cut(s) 36, 493
MspA1I CMGCKG 1 cut(s) 170
MspI CCGG 2 cut(s) 243, 366
MspR9I CCNGG 1 cut(s) 366
MwoI GCNNNNNNNGC 5 cut(s) 117, 152, 161, 170, 423
NciI CCSGG 1 cut(s) 366
NdeII GATC 1 cut(s) 359
NlaIV GGNNCC 1 cut(s) 376
NmuCI GTSAC 1 cut(s) 479
PdmI GAANNNNTTC 1 cut(s) 88
PfeI GAWTC 2 cut(s) 283, 469
PkrI GCNGC 3 cut(s) 154, 172, 353
PleI GAGTC 2 cut(s) 202, 319
PpsI GAGTC 2 cut(s) 202, 319
PspN4I GGNNCC 1 cut(s) 376
PspPI GGNCC 2 cut(s) 374, 488
PstI CTGCAG 2 cut(s) 136, 157
PvuII CAGCTG 1 cut(s) 170
SaqAI TTAA 2 cut(s) 36, 493
SatI GCNGC 3 cut(s) 153, 171, 352
Sau3AI GATC 1 cut(s) 359
Sau96I GGNCC 2 cut(s) 374, 488
SchI GAGTC 2 cut(s) 203, 320
ScrFI CCNGG 1 cut(s) 366
SduI GDGCHC 1 cut(s) 452
SetI ASST 6 cut(s) 166, 172, 184, 211, 280, 397
SfaNI GCATC 2 cut(s) 81, 182
SfcI CTRYAG 3 cut(s) 132, 153, 396
Sse9I AATT 2 cut(s) 6, 27
SsiI CCGC 3 cut(s) 230, 308, 351
SspMI CTAG 1 cut(s) 218
StyD4I CCNGG 1 cut(s) 364
StyI CCWWGG 1 cut(s) 261
TaaI ACNGT 1 cut(s) 437
TaqI TCGA 2 cut(s) 192, 472
TasI AATT 2 cut(s) 6, 27
TauI GCSGC 1 cut(s) 354
TfiI GAWTC 2 cut(s) 283, 469
Tru1I TTAA 2 cut(s) 36, 493
Tru9I TTAA 2 cut(s) 36, 493
TscAI CASTG 1 cut(s) 162
TseFI GTSAC 1 cut(s) 479
TseI GCWGC 2 cut(s) 152, 170
Tsp45I GTSAC 1 cut(s) 479
TspRI CASTG 1 cut(s) 162
XagI CCTNNNNNAGG 1 cut(s) 204
XmnI GAANNNNTTC 1 cut(s) 88
XspI CTAG 1 cut(s) 218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.