pycom09g08730

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0014391
Physical Location & Seq
Reverse (-)
6825096 .. 6826067
972 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g08730.3

Sequence Viewer

Length: 567 bp
ATGCTAATTTATTATGTCCCAACTTCTCCATTCCTTCTCAATAAAATCCCACCACAACTTGAAAAAATCAACATCGCCAACAAGATTAACAATGCCAATGGTATTAGCATCAGAAGCACTTCCCAAGCCACCAGCAGCAGCAGCAGCAGAAGCACTTCCCAAGCCACCAGCAGCAGCAGCAGAAGAAACAGAAGCAGAAGCTTTCTCTTAGCAACTGCAGGGTTTCTTGCAGCTGCTGCAGTTTTAGCTTCTGCCGGTGCAGTTGAGTCTCCTGAGCAATCTGAGACTCTAGAAAATATTCCCCAGACACTGTCTGGAGAGTGTGCTTTGCCCAAGGATTGCAAGAAACCGAGGATTCAAAGACCAAAGTCGAGAAAGGCAGAGTCTTGCACAATTAAGTGCGTCACCACCTGCATTAGAGGTGGTGAGGGCTCACCTGGTGAAGGCCCCTTCAATGTCAGGAGGCCTATAGTTGTTTTCAAGCAAGGATTTAGAAGCCGGCAATATTGTTTGGTGGAGTGCTCAGATATTTGCAATTTAATTAAAGATGGTGACGACGGGCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

189

Amino Acids

20.21

Weight (kDa)

9.45

Isoelectric Point (pI)

77.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014391)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G78995
fragaria_vesca FvH4_6g36350 FvH4_6g36350
malus_domestica MD09G1169800.v1.1
prunus_persica Prupe.3G028000_v2.0.a1
pyrus_communis pycom09g08730
rosa_chinensis RchiOBHm_Chr2g0148351
rosa_laevigata RLG00000020342
rosa_multiflora Rmu_sc0011136.1_g000003
rosa_roxburghii Rroxscaffold_2G00098840
rosa_rugosa Rorug02G0406000 Rorug02G0406000
rosa_samantha Rh2AG465100 Rh2BG477700 Rh2CG451500 Rh2DG486600
rosa_wichuraiana Rw2G037900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 419
Acc36I ACCTGC 1 cut(s) 419
AdeI CACNNNGTG 1 cut(s) 440
AfiI CCNNNNNNNGG 1 cut(s) 443
AgsI TTSAA 4 cut(s) 62, 359, 454, 481
AjnI CCWGG 1 cut(s) 436
AluBI AGCT 3 cut(s) 201, 233, 248
AluI AGCT 3 cut(s) 201, 233, 248
Alw21I GWGCWC 1 cut(s) 524
Alw26I GTCTC 2 cut(s) 273, 278
AlwNI CAGNNNCTG 2 cut(s) 236, 310
AoxI GGCC 3 cut(s) 445, 464, 560
Asp700I GAANNNNTTC 3 cut(s) 118, 154, 297
AspS9I GGNCC 2 cut(s) 446, 560
AsuHPI GGTGA 5 cut(s) 397, 426, 437, 452, 563
BanII GRGCYC 1 cut(s) 434
Bbv12I GWGCWC 1 cut(s) 524
BccI CCATC 1 cut(s) 542
BciT130I CCWGG 1 cut(s) 438
BcoDI GTCTC 2 cut(s) 273, 278
BfaI CTAG 1 cut(s) 290
BfmI CTRYAG 3 cut(s) 216, 237, 468
BfuAI ACCTGC 1 cut(s) 419
Bme1390I CCNGG 1 cut(s) 438
BmgT120I GGNCC 2 cut(s) 446, 560
BmiI GGNNCC 1 cut(s) 448
BmrFI CCNGG 1 cut(s) 438
BmsI GCATC 1 cut(s) 117
BoxI GACNNNNGTC 1 cut(s) 367
BpmI CTGGAG 1 cut(s) 336
Bpu10I CCTNAGC 1 cut(s) 273
BsaJI CCNNGG 2 cut(s) 333, 350
Bsc4I CCNNNNNNNGG 1 cut(s) 443
Bse118I RCCGGY 2 cut(s) 254, 498
BseBI CCWGG 1 cut(s) 438
BseDI CCNNGG 2 cut(s) 333, 350
BseLI CCNNNNNNNGG 1 cut(s) 443
BseMII CTCAG 3 cut(s) 264, 273, 537
BsgI GTGCAG 1 cut(s) 279
BshFI GGCC 3 cut(s) 447, 466, 562
BsiHKAI GWGCWC 1 cut(s) 524
BsiSI CCGG 2 cut(s) 255, 499
BslFI GGGAC 1 cut(s) 2
BslI CCNNNNNNNGG 1 cut(s) 443
BsmAI GTCTC 2 cut(s) 273, 278
BsmFI GGGAC 1 cut(s) 2
BsnI GGCC 3 cut(s) 447, 466, 562
Bsp1286I GDGCHC 2 cut(s) 434, 524
BspANI GGCC 3 cut(s) 447, 466, 562
BspCNI CTCAG 3 cut(s) 265, 274, 536
BspLI GGNNCC 1 cut(s) 448
BspMAI CTGCAG 2 cut(s) 220, 241
BspMI ACCTGC 1 cut(s) 419
BsrFI RCCGGY 2 cut(s) 254, 498
BssAI RCCGGY 2 cut(s) 254, 498
BssECI CCNNGG 2 cut(s) 333, 350
BssT1I CCWWGG 1 cut(s) 333
Bst2UI CCWGG 1 cut(s) 438
Bst4CI ACNGT 1 cut(s) 312
BstAPI GCANNNNNTGC 1 cut(s) 236
BstC8I GCNNGC 1 cut(s) 500
BstDEI CTNAG 4 cut(s) 208, 273, 282, 523
BstENI CCTNNNNNAGG 1 cut(s) 441
BstMAI GTCTC 2 cut(s) 273, 278
BstMWI GCNNNNNNNGC 7 cut(s) 114, 141, 144, 150, 177, 236, 245
BstNI CCWGG 1 cut(s) 438
BstPAI GACNNNNGTC 1 cut(s) 367
BstSCI CCNGG 1 cut(s) 436
BstSFI CTRYAG 3 cut(s) 216, 237, 468
BsuRI GGCC 3 cut(s) 447, 466, 562
BtgZI GCGATG 1 cut(s) 58
BtsIMutI CAGTG 1 cut(s) 308
BveI ACCTGC 1 cut(s) 419
Cac8I GCNNGC 1 cut(s) 500
CaiI CAGNNNCTG 2 cut(s) 236, 310
Cfr10I RCCGGY 2 cut(s) 254, 498
Cfr13I GGNCC 2 cut(s) 446, 560
CseI GACGC 1 cut(s) 391
CsiI ACCWGGT 1 cut(s) 436
DdeI CTNAG 4 cut(s) 208, 273, 282, 523
DraIII CACNNNGTG 1 cut(s) 440
Eco130I CCWWGG 1 cut(s) 333
Eco147I AGGCCT 1 cut(s) 466
Eco24I GRGCYC 1 cut(s) 434
EcoNI CCTNNNNNAGG 1 cut(s) 441
EcoO109I RGGNCCY 1 cut(s) 446
EcoRII CCWGG 1 cut(s) 436
EcoT14I CCWWGG 1 cut(s) 333
EcoT38I GRGCYC 1 cut(s) 434
ErhI CCWWGG 1 cut(s) 333
FaiI YATR 2 cut(s) 15, 470
FaqI GGGAC 1 cut(s) 2
FriOI GRGCYC 1 cut(s) 434
FspBI CTAG 1 cut(s) 290
GsuI CTGGAG 1 cut(s) 336
HaeIII GGCC 3 cut(s) 447, 466, 562
HapII CCGG 2 cut(s) 255, 499
HgaI GACGC 1 cut(s) 391
HindIII AAGCTT 1 cut(s) 199
HinfI GANTC 4 cut(s) 266, 286, 355, 383
HpaII CCGG 2 cut(s) 255, 499
HphI GGTGA 5 cut(s) 397, 426, 437, 452, 563
Hpy188I TCNGA 3 cut(s) 113, 283, 526
Hpy188III TCNNGA 5 cut(s) 272, 290, 315, 372, 460
Hpy99I CGWCG 1 cut(s) 560
HpyAV CCTTC 3 cut(s) 44, 437, 460
HpyCH4III ACNGT 1 cut(s) 312
HpyCH4V TGCA 8 cut(s) 218, 230, 239, 260, 342, 390, 414, 534
HpyF10VI GCNNNNNNNGC 7 cut(s) 114, 141, 144, 150, 177, 236, 245
HpyF3I CTNAG 4 cut(s) 208, 273, 282, 523
KroI GCCGGC 1 cut(s) 498
KroNI GCCGGC 1 cut(s) 500
LweI GCATC 1 cut(s) 117
MabI ACCWGGT 1 cut(s) 436
MaeI CTAG 1 cut(s) 290
MaeIII GTNAC 2 cut(s) 403, 551
MboII GAAGA 1 cut(s) 195
MhlI GDGCHC 2 cut(s) 434, 524
MluCI AATT 4 cut(s) 6, 393, 535, 540
MlyI GAGTC 3 cut(s) 275, 280, 392
MnlI CCTC 4 cut(s) 345, 413, 421, 456
MroNI GCCGGC 1 cut(s) 498
MroXI GAANNNNTTC 3 cut(s) 118, 154, 297
MseI TTAA 5 cut(s) 87, 396, 539, 543, 565
MspA1I CMGCKG 1 cut(s) 233
MspI CCGG 2 cut(s) 255, 499
MspR9I CCNGG 1 cut(s) 438
MvaI CCWGG 1 cut(s) 438
MwoI GCNNNNNNNGC 7 cut(s) 114, 141, 144, 150, 177, 236, 245
NaeI GCCGGC 1 cut(s) 500
NgoMIV GCCGGC 1 cut(s) 498
NlaIV GGNNCC 1 cut(s) 448
NmuCI GTSAC 2 cut(s) 403, 551
PacI TTAATTAA 1 cut(s) 543
PaqCI CACCTGC 1 cut(s) 419
PceI AGGCCT 1 cut(s) 466
PdiI GCCGGC 1 cut(s) 500
PdmI GAANNNNTTC 3 cut(s) 118, 154, 297
PfeI GAWTC 1 cut(s) 355
PflFI GACNNNGTC 1 cut(s) 310
PleI GAGTC 3 cut(s) 274, 280, 391
PpsI GAGTC 3 cut(s) 274, 280, 391
PshAI GACNNNNGTC 1 cut(s) 367
Psp6I CCWGG 1 cut(s) 436
PspGI CCWGG 1 cut(s) 436
PspN4I GGNNCC 1 cut(s) 448
PspPI GGNCC 2 cut(s) 446, 560
PstI CTGCAG 2 cut(s) 220, 241
PstNI CAGNNNCTG 2 cut(s) 236, 310
PsyI GACNNNGTC 1 cut(s) 310
PvuII CAGCTG 1 cut(s) 233
SaqAI TTAA 5 cut(s) 87, 396, 539, 543, 565
Sau96I GGNCC 2 cut(s) 446, 560
SchI GAGTC 3 cut(s) 275, 280, 392
ScrFI CCNGG 1 cut(s) 438
SduI GDGCHC 2 cut(s) 434, 524
SetI ASST 6 cut(s) 203, 235, 250, 413, 424, 439
SexAI ACCWGGT 1 cut(s) 436
SfaNI GCATC 1 cut(s) 117
SfcI CTRYAG 3 cut(s) 216, 237, 468
Sse9I AATT 4 cut(s) 6, 393, 535, 540
SseBI AGGCCT 1 cut(s) 466
SspI AATATT 2 cut(s) 298, 506
SspMI CTAG 1 cut(s) 290
StuI AGGCCT 1 cut(s) 466
StyD4I CCNGG 1 cut(s) 436
StyI CCWWGG 1 cut(s) 333
TaaI ACNGT 1 cut(s) 312
TaqI TCGA 1 cut(s) 371
TasI AATT 4 cut(s) 6, 393, 535, 540
TfiI GAWTC 1 cut(s) 355
Tru1I TTAA 5 cut(s) 87, 396, 539, 543, 565
Tru9I TTAA 5 cut(s) 87, 396, 539, 543, 565
TscAI CASTG 1 cut(s) 315
TseFI GTSAC 2 cut(s) 403, 551
Tsp45I GTSAC 2 cut(s) 403, 551
TspRI CASTG 1 cut(s) 315
Tth111I GACNNNGTC 1 cut(s) 310
XagI CCTNNNNNAGG 1 cut(s) 441
XbaI TCTAGA 1 cut(s) 289
XcmI CCANNNNNNNNNTGG 1 cut(s) 311
XmnI GAANNNNTTC 3 cut(s) 118, 154, 297
XspI CTAG 1 cut(s) 290
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.