Rorug02G0406000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0014391
Physical Location & Seq
Reverse (-)
51829844 .. 51831870
2027 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0406000.1

Sequence Viewer

Length: 327 bp
ATGGCTTGGAGGCAAATACTGTTCCACACCAGAGCAATTTTGACTCCACATTCAACAACTGGGCTCGCCAGCTTCTCCACCAAATCAACCCCATACTTGGAGAAAGTCGGGATACCCGAATTTTTAAAAGGAATAGGCAATGGGGTGGAAGCTCATGTGGCTAAAATTGAATCTGAGATTGGTGACTTTCAGAAGCTGCTCCTCACTCGTACTCTCAGACTGAAGAAACTTGGCATCCCTGTCAAACAAAGGAAGCTGATCTTGAAATACACCCACAAGTATAGGCTGGGACTCTGGAGGCCTCTAGCTCAGCCAATGAAATCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

108

Amino Acids

12.31

Weight (kDa)

10.56

Isoelectric Point (pI)

23.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SAM_Ribosomal_mS41 PF09597 31 - 97 5.5e-19 Small ribosomal subunit protein mS41 SAM domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014391)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G78995
fragaria_vesca FvH4_6g36350 FvH4_6g36350
malus_domestica MD09G1169800.v1.1
prunus_persica Prupe.3G028000_v2.0.a1
pyrus_communis pycom09g08730
rosa_chinensis RchiOBHm_Chr2g0148351
rosa_laevigata RLG00000020342
rosa_multiflora Rmu_sc0011136.1_g000003
rosa_roxburghii Rroxscaffold_2G00098840
rosa_rugosa Rorug02G0406000 Rorug02G0406000
rosa_samantha Rh2AG465100 Rh2BG477700 Rh2CG451500 Rh2DG486600
rosa_wichuraiana Rw2G037900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 119
AcuI CTGAAG 1 cut(s) 242
AfaI GTAC 1 cut(s) 211
AfiI CCNNNNNNNGG 1 cut(s) 97
AgsI TTSAA 3 cut(s) 54, 170, 265
AjuI GAANNNNNNNTTGG 2 cut(s) 162, 194
AluBI AGCT 5 cut(s) 72, 152, 196, 256, 308
AluI AGCT 5 cut(s) 72, 152, 196, 256, 308
AlwNI CAGNNNCTG 1 cut(s) 196
AoxI GGCC 1 cut(s) 299
ApeKI GCWGC 1 cut(s) 196
ApoI RAATTY 1 cut(s) 119
AsuHPI GGTGA 1 cut(s) 194
BanII GRGCYC 1 cut(s) 66
BbvI GCAGC 1 cut(s) 183
BciVI GTATCC 1 cut(s) 105
BfaI CTAG 2 cut(s) 305, 325
BfuI GTATCC 1 cut(s) 105
BisI GCNGC 1 cut(s) 197
BlpI GCTNAGC 1 cut(s) 309
BlsI GCNGC 1 cut(s) 198
BmrI ACTGGG 1 cut(s) 69
BmsI GCATC 1 cut(s) 243
BmuI ACTGGG 1 cut(s) 69
BpmI CTGGAG 1 cut(s) 316
Bpu1102I GCTNAGC 1 cut(s) 309
Bsc4I CCNNNNNNNGG 1 cut(s) 97
Bse1I ACTGG 1 cut(s) 64
Bse3DI GCAATG 1 cut(s) 145
BseGI GGATG 1 cut(s) 234
BseLI CCNNNNNNNGG 1 cut(s) 97
BseMI GCAATG 1 cut(s) 145
BseMII CTCAG 3 cut(s) 165, 229, 323
BseNI ACTGG 1 cut(s) 64
BseRI GAGGAG 1 cut(s) 191
BseXI GCAGC 1 cut(s) 183
BseYI CCCAGC 1 cut(s) 286
BshFI GGCC 1 cut(s) 301
BslFI GGGAC 1 cut(s) 303
BslI CCNNNNNNNGG 1 cut(s) 97
BsmFI GGGAC 1 cut(s) 303
BsnI GGCC 1 cut(s) 301
Bsp1286I GDGCHC 1 cut(s) 66
Bsp143I GATC 1 cut(s) 258
Bsp1720I GCTNAGC 1 cut(s) 309
BspANI GGCC 1 cut(s) 301
BspCNI CTCAG 3 cut(s) 166, 228, 322
BsrDI GCAATG 1 cut(s) 145
BsrI ACTGG 1 cut(s) 64
BssMI GATC 1 cut(s) 258
Bst4CI ACNGT 1 cut(s) 21
BstC8I GCNNGC 2 cut(s) 66, 70
BstDEI CTNAG 3 cut(s) 174, 215, 309
BstF5I GGATG 1 cut(s) 234
BstKTI GATC 1 cut(s) 261
BstMBI GATC 1 cut(s) 258
BstMWI GCNNNNNNNGC 1 cut(s) 158
BstV1I GCAGC 1 cut(s) 183
BsuI GTATCC 1 cut(s) 105
BsuRI GGCC 1 cut(s) 301
BtsCI GGATG 1 cut(s) 234
Cac8I GCNNGC 2 cut(s) 66, 70
CaiI CAGNNNCTG 1 cut(s) 196
Csp6I GTAC 1 cut(s) 210
CviAII CATG 1 cut(s) 155
CviQI GTAC 1 cut(s) 210
DdeI CTNAG 3 cut(s) 174, 215, 309
DpnI GATC 1 cut(s) 260
DpnII GATC 1 cut(s) 258
DraI TTTAAA 1 cut(s) 126
Eco147I AGGCCT 1 cut(s) 301
Eco24I GRGCYC 1 cut(s) 66
Eco57I CTGAAG 1 cut(s) 242
EcoT38I GRGCYC 1 cut(s) 66
FaeI CATG 1 cut(s) 158
FaiI YATR 3 cut(s) 94, 156, 282
FalI AAGNNNNNCTT 2 cut(s) 245, 277
FaqI GGGAC 1 cut(s) 303
FatI CATG 1 cut(s) 154
Fnu4HI GCNGC 1 cut(s) 197
FokI GGATG 1 cut(s) 221
FriOI GRGCYC 1 cut(s) 66
Fsp4HI GCNGC 1 cut(s) 197
FspBI CTAG 2 cut(s) 305, 325
GluI GCNGC 1 cut(s) 197
GsaI CCCAGC 1 cut(s) 290
GsuI CTGGAG 1 cut(s) 316
HaeIII GGCC 1 cut(s) 301
Hin1II CATG 1 cut(s) 158
HinfI GANTC 3 cut(s) 43, 170, 291
HphI GGTGA 1 cut(s) 194
Hpy188I TCNGA 3 cut(s) 175, 192, 218
Hpy188III TCNNGA 3 cut(s) 109, 262, 295
HpyCH4III ACNGT 1 cut(s) 21
HpyF10VI GCNNNNNNNGC 1 cut(s) 158
HpyF3I CTNAG 3 cut(s) 174, 215, 309
Hsp92II CATG 1 cut(s) 158
Kzo9I GATC 1 cut(s) 258
LmnI GCTCC 1 cut(s) 204
LpnPI CCDG 6 cut(s) 43, 45, 82, 252, 272, 280
Lsp1109I GCAGC 1 cut(s) 183
LweI GCATC 1 cut(s) 243
MaeI CTAG 2 cut(s) 305, 325
MaeIII GTNAC 1 cut(s) 182
MalI GATC 1 cut(s) 260
MboI GATC 1 cut(s) 258
MboII GAAGA 1 cut(s) 235
MhlI GDGCHC 1 cut(s) 66
MluCI AATT 3 cut(s) 36, 119, 165
MlyI GAGTC 2 cut(s) 37, 285
MnlI CCTC 4 cut(s) 3, 212, 291, 312
MseI TTAA 1 cut(s) 125
MwoI GCNNNNNNNGC 1 cut(s) 158
NdeII GATC 1 cut(s) 258
NlaIII CATG 1 cut(s) 158
NmuCI GTSAC 1 cut(s) 182
PceI AGGCCT 1 cut(s) 301
PcsI WCGNNNNNNNCGW 1 cut(s) 114
PfeI GAWTC 1 cut(s) 170
PkrI GCNGC 1 cut(s) 198
PleI GAGTC 2 cut(s) 37, 285
PpsI GAGTC 2 cut(s) 37, 285
PspFI CCCAGC 1 cut(s) 286
PstNI CAGNNNCTG 1 cut(s) 196
RsaI GTAC 1 cut(s) 211
RsaNI GTAC 1 cut(s) 210
SaqAI TTAA 1 cut(s) 125
SatI GCNGC 1 cut(s) 197
Sau3AI GATC 1 cut(s) 258
SchI GAGTC 2 cut(s) 37, 285
SduI GDGCHC 1 cut(s) 66
SetI ASST 5 cut(s) 74, 154, 198, 258, 310
SfaNI GCATC 1 cut(s) 243
Sse9I AATT 3 cut(s) 36, 119, 165
SseBI AGGCCT 1 cut(s) 301
SspMI CTAG 2 cut(s) 305, 325
StuI AGGCCT 1 cut(s) 301
TaaI ACNGT 1 cut(s) 21
TasI AATT 3 cut(s) 36, 119, 165
TfiI GAWTC 1 cut(s) 170
Tru1I TTAA 1 cut(s) 125
Tru9I TTAA 1 cut(s) 125
TseFI GTSAC 1 cut(s) 182
TseI GCWGC 1 cut(s) 196
Tsp45I GTSAC 1 cut(s) 182
XapI RAATTY 1 cut(s) 119
XspI CTAG 2 cut(s) 305, 325
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.