AT1G79420

Protein of unknown function (DUF620)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0015065
Physical Location & Seq
Forward (+)
29871326 .. 29874329
3004 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G79420.1

Sequence Viewer

Length: 1254 bp
ATGAGCAACTCAAAGTCATACTGGAGAAAGCAAAGATGGGGAACGCCGCCACAAGCCCTAACACCGTTAATGGAAGGACCAGATCCAGACATGCAAGACGAAAGAACCAAGAAGGAGAGCTCATGGGAAGCAATTAGAGAATGGTTTAAGGTTCATAAGGGCATTTCTGGAAATATGTCATCTCCTTCGGTCCAACCACTTTGCAACAGCTATGACGTGCCAGCTAAGGGACAAGACTTGAGGCTCTTGCTCGGCGTCTTGGGTTGTCCTCTTGCTCCAATCTCCGTTGTCGTCTCTGACCTATTTCCCGATGACCCTCTTCTTGGTTCTTTCCAAATCAAGAATGTCCCATTTGAGACGTCGACAGCGCATTATATAATACAACAATACTTAGCGGCGACGGGATGTCTAAAGCGAGCGAAGGCGGCGAAAAACATGTACGCGACGGGGATAATGAAAATGAGTTGCTGTGAGACGGAGATAGCCGCCGGAAAAAGTGTGAAGACACTAGGCGGTGGTGGAAACGGTAGGAGCGGAGATAGTGGTTGCTTCGTGCTGTGGCAGATGCAGCCTGGAATGTGGTCTCTGGAGCTTGTTCTCGGTGGAACTAAACTCATCTCTGGCTCGGACGGTAAAACAGTTTGGCGCCATACGCCATGGCTCGGTACTCACGCCGCTAAAGGCCCTCAACGTCCACTTCGTCGTCTAATCCAGGGCTTGGACCCAAAAACCACAGCAAGCCTATTCGCAAAGGCCCAATGCTTAGGCGAACGAAGAATCGGCGACGATGACTGTTTCGTGCTCAAAGTCTCCGCCGATCGTGACTCGTTGTTAGAACGGAATGACGCCGGAGCTCCGGCGGAGGTTATACGCCACGCACTGTACGGATACTTCTGTCAGAAAAGCGGTCTATTAGTCTATTTAGAGGATTCGCACCTCACTAGGGTTATGACGATCTCGCCTGAGGACGAGGCGGTTTACTGGGAGACGACGATCGGAACAAGCATCGGAGATTACCGTGACGTTGACGGAGTAGCCGTCGCGCATTGTGGTCGTGCCGTCGCGACGGTGTTCCGATTTGGGGAGACGTCGTTGCAGTATAGCAGAACGAGGATGGAGGAGATTTGGAGGATAGACGACGTCGTTTTCGATGTGCCTGGTCTCTCTTTGGACTCCTTTATTCCTCCCGCCGATATATTTGAAGATACTAACCCTAACAATAATAATATTTACAGTATTGTTAATTCCCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF620

Protein Analysis

417

Amino Acids

45.97

Weight (kDa)

6.2

Isoelectric Point (pI)

39.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF620 PF04788 146 - 396 1.4e-106 Protein of unknown function (DUF620)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015065)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G79420
fragaria_vesca FvH4_3g14040
malus_domestica MD05G1238500.v1.1 MD10G1216800.v1.1
prunus_persica Prupe.4G127900_v2.0.a1
pyrus_communis pycom05g21460
rosa_chinensis RchiOBHm_Chr5g0023361
rosa_laevigata RLG00000032716
rosa_multiflora Rmu_sc0007223.1_g000005
rosa_roxburghii Rroxscaffold_1G00055980
rosa_rugosa Rorug05G0078600
rosa_samantha Rh5AG165500 Rh5BG164700 Rh5CG179600 Rh5DG166200
rosa_wichuraiana Rw5G014890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 3 cut(s) 362, 1091, 1143
AccB1I GGYRCC 1 cut(s) 645
AccB7I CCANNNNNTGG 1 cut(s) 718
AccBSI CCGCTC 1 cut(s) 534
AccI GTMKAC 1 cut(s) 362
AccII CGCG 3 cut(s) 443, 1043, 1064
AclWI GGATC 1 cut(s) 77
AcyI GRCGYC 6 cut(s) 255, 359, 646, 846, 1088, 1140
AfaI GTAC 3 cut(s) 440, 667, 884
AfiI CCNNNNNNNGG 6 cut(s) 227, 323, 662, 718, 943, 1081
AflIII ACRYGT 1 cut(s) 435
AgsI TTSAA 1 cut(s) 1202
AhdI GACNNNNNGTC 1 cut(s) 405
AjiI CACGTC 1 cut(s) 217
AjnI CCWGG 3 cut(s) 571, 711, 1156
AluBI AGCT 5 cut(s) 120, 210, 224, 592, 854
AluI AGCT 5 cut(s) 120, 210, 224, 592, 854
Alw21I GWGCWC 3 cut(s) 122, 804, 856
Alw26I GTCTC 8 cut(s) 298, 350, 467, 588, 814, 980, 1079, 1166
AlwI GGATC 1 cut(s) 77
AoxI GGCC 2 cut(s) 682, 753
ApeKI GCWGC 1 cut(s) 568
ArsI GACNNNNNNTTYG 2 cut(s) 1130, 1162
AspLEI GCGC 3 cut(s) 370, 648, 1045
AspS9I GGNCC 5 cut(s) 77, 190, 683, 721, 754
AvaII GGWCC 3 cut(s) 77, 190, 721
AxyI CCTNAGG 1 cut(s) 963
BaeI ACNNNNGTAYC 2 cut(s) 880, 913
BanI GGYRCC 1 cut(s) 645
BanII GRGCYC 2 cut(s) 122, 856
BarI GAAGNNNNNNTAC 2 cut(s) 875, 907
BbsI GAAGAC 1 cut(s) 509
Bbv12I GWGCWC 3 cut(s) 122, 804, 856
BbvI GCAGC 1 cut(s) 580
BccI CCATC 2 cut(s) 30, 1108
BceAI ACGGC 2 cut(s) 1022, 1043
BcgI CGANNNNNNTGC 2 cut(s) 1034, 1068
BciT130I CCWGG 3 cut(s) 573, 713, 1158
BciVI GTATCC 1 cut(s) 881
BcoDI GTCTC 8 cut(s) 298, 350, 467, 588, 814, 980, 1079, 1166
BfaI CTAG 2 cut(s) 509, 942
BfoI RGCGCY 1 cut(s) 649
BfuI GTATCC 1 cut(s) 881
BisI GCNGC 6 cut(s) 47, 396, 426, 486, 569, 675
BlsI GCNGC 6 cut(s) 48, 397, 427, 487, 570, 676
Bme1390I CCNGG 3 cut(s) 573, 713, 1158
Bme18I GGWCC 3 cut(s) 77, 190, 721
BmeRI GACNNNNNGTC 1 cut(s) 405
BmgBI CACGTC 1 cut(s) 217
BmgT120I GGNCC 5 cut(s) 77, 190, 683, 721, 754
BmiI GGNNCC 2 cut(s) 647, 723
BmrFI CCNGG 3 cut(s) 573, 713, 1158
BmrI ACTGGG 1 cut(s) 991
BmsI GCATC 2 cut(s) 555, 1014
BmuI ACTGGG 1 cut(s) 991
BpiI GAAGAC 1 cut(s) 509
BpmI CTGGAG 2 cut(s) 43, 608
Bpu10I CCTNAGC 2 cut(s) 225, 763
BpuEI CTTGAG 1 cut(s) 259
BsaHI GRCGYC 6 cut(s) 255, 359, 646, 846, 1088, 1140
BsaI GGTCTC 2 cut(s) 588, 1166
BsaJI CCNNGG 2 cut(s) 656, 712
BsaXI ACNNNNNCTCC 4 cut(s) 1023, 1053, 1076, 1106
Bsc4I CCNNNNNNNGG 6 cut(s) 227, 323, 662, 718, 943, 1081
Bse1I ACTGG 2 cut(s) 26, 986
Bse21I CCTNAGG 1 cut(s) 963
BseBI CCWGG 3 cut(s) 573, 713, 1158
BseDI CCNNGG 2 cut(s) 656, 712
BseGI GGATG 2 cut(s) 410, 1119
BseLI CCNNNNNNNGG 6 cut(s) 227, 323, 662, 718, 943, 1081
BseMII CTCAG 1 cut(s) 954
BseNI ACTGG 2 cut(s) 26, 986
BseRI GAGGAG 1 cut(s) 1133
BseXI GCAGC 1 cut(s) 580
Bsh1236I CGCG 3 cut(s) 443, 1043, 1064
Bsh1285I CGRYCG 2 cut(s) 820, 996
BshFI GGCC 2 cut(s) 684, 755
BshNI GGYRCC 1 cut(s) 645
BsiEI CGRYCG 2 cut(s) 820, 996
BsiHKAI GWGCWC 3 cut(s) 122, 804, 856
BsiSI CCGG 3 cut(s) 489, 849, 857
BslFI GGGAC 2 cut(s) 243, 332
BslI CCNNNNNNNGG 6 cut(s) 227, 323, 662, 718, 943, 1081
BsmAI GTCTC 8 cut(s) 298, 350, 467, 588, 814, 980, 1079, 1166
BsmBI CGTCTC 5 cut(s) 298, 350, 467, 980, 1079
BsmFI GGGAC 2 cut(s) 243, 332
BsnI GGCC 2 cut(s) 684, 755
Bso31I GGTCTC 2 cut(s) 588, 1166
Bsp1286I GDGCHC 3 cut(s) 122, 804, 856
Bsp143I GATC 4 cut(s) 82, 817, 954, 993
Bsp19I CCATGG 1 cut(s) 656
Bsp68I TCGCGA 1 cut(s) 1064
BspANI GGCC 2 cut(s) 684, 755
BspCNI CTCAG 1 cut(s) 955
BspFNI CGCG 3 cut(s) 443, 1043, 1064
BspLI GGNNCC 2 cut(s) 647, 723
BspPI GGATC 1 cut(s) 77
BspT107I GGYRCC 1 cut(s) 645
BspTNI GGTCTC 2 cut(s) 588, 1166
BsrBI CCGCTC 1 cut(s) 534
BsrI ACTGG 2 cut(s) 26, 986
BssECI CCNNGG 2 cut(s) 656, 712
BssMI GATC 4 cut(s) 82, 817, 954, 993
BssNI GRCGYC 6 cut(s) 255, 359, 646, 846, 1088, 1140
BssT1I CCWWGG 1 cut(s) 656
Bst2UI CCWGG 3 cut(s) 573, 713, 1158
Bst4CI ACNGT 9 cut(s) 66, 527, 632, 640, 794, 882, 1019, 1069, 1235
Bst6I CTCTTC 1 cut(s) 324
BstACI GRCGYC 6 cut(s) 255, 359, 646, 846, 1088, 1140
BstC8I GCNNGC 3 cut(s) 222, 417, 739
BstDEI CTNAG 4 cut(s) 225, 391, 763, 963
BstDSI CCRYGG 1 cut(s) 656
BstF5I GGATG 2 cut(s) 410, 1119
BstFNI CGCG 3 cut(s) 443, 1043, 1064
BstH2I RGCGCY 1 cut(s) 649
BstHHI GCGC 3 cut(s) 370, 648, 1045
BstKTI GATC 4 cut(s) 85, 820, 957, 996
BstMAI GTCTC 8 cut(s) 298, 350, 467, 588, 814, 980, 1079, 1166
BstMBI GATC 4 cut(s) 82, 817, 954, 993
BstMCI CGRYCG 2 cut(s) 820, 996
BstMWI GCNNNNNNNGC 3 cut(s) 425, 568, 652
BstNI CCWGG 3 cut(s) 573, 713, 1158
BstNSI RCATGY 2 cut(s) 94, 439
BstSCI CCNGG 3 cut(s) 571, 711, 1156
BstUI CGCG 3 cut(s) 443, 1043, 1064
BstV1I GCAGC 1 cut(s) 580
BstV2I GAAGAC 1 cut(s) 509
BstX2I RGATCY 1 cut(s) 82
BstYI RGATCY 1 cut(s) 82
Bsu36I CCTNAGG 1 cut(s) 963
BsuI GTATCC 1 cut(s) 881
BsuRI GGCC 2 cut(s) 684, 755
BtgI CCRYGG 1 cut(s) 656
BtrI CACGTC 1 cut(s) 217
BtsCI GGATG 2 cut(s) 410, 1119
BtsIMutI CAGTG 1 cut(s) 878
BtuMI TCGCGA 1 cut(s) 1064
Cac8I GCNNGC 3 cut(s) 222, 417, 739
CfoI GCGC 3 cut(s) 370, 648, 1045
Cfr13I GGNCC 5 cut(s) 77, 190, 683, 721, 754
CseI GACGC 2 cut(s) 244, 854
Csp6I GTAC 3 cut(s) 439, 666, 883
CviAII CATG 4 cut(s) 91, 123, 436, 657
CviQI GTAC 3 cut(s) 439, 666, 883
DdeI CTNAG 4 cut(s) 225, 391, 763, 963
DinI GGCGCC 1 cut(s) 647
DpnI GATC 4 cut(s) 84, 819, 956, 995
DpnII GATC 4 cut(s) 82, 817, 954, 993
DriI GACNNNNNGTC 1 cut(s) 405
Eam1104I CTCTTC 1 cut(s) 324
Eam1105I GACNNNNNGTC 1 cut(s) 405
EarI CTCTTC 1 cut(s) 324
EciI GGCGGA 2 cut(s) 802, 875
Ecl136II GAGCTC 2 cut(s) 120, 854
Eco130I CCWWGG 1 cut(s) 656
Eco24I GRGCYC 2 cut(s) 122, 856
Eco31I GGTCTC 2 cut(s) 588, 1166
Eco47I GGWCC 3 cut(s) 77, 190, 721
Eco53kI GAGCTC 2 cut(s) 120, 854
Eco81I CCTNAGG 1 cut(s) 963
EcoICRI GAGCTC 2 cut(s) 120, 854
EcoO109I RGGNCCY 1 cut(s) 683
EcoRII CCWGG 3 cut(s) 571, 711, 1156
EcoT14I CCWWGG 1 cut(s) 656
EcoT38I GRGCYC 2 cut(s) 122, 856
EgeI GGCGCC 1 cut(s) 647
EheI GGCGCC 1 cut(s) 647
ErhI CCWWGG 1 cut(s) 656
Esp3I CGTCTC 5 cut(s) 298, 350, 467, 980, 1079
FaeI CATG 4 cut(s) 94, 126, 439, 660
FaqI GGGAC 2 cut(s) 243, 332
FatI CATG 4 cut(s) 90, 122, 435, 656
FauI CCCGC 1 cut(s) 1195
FblI GTMKAC 1 cut(s) 362
Fnu4HI GCNGC 6 cut(s) 47, 396, 426, 486, 569, 675
FokI GGATG 2 cut(s) 417, 1126
FriOI GRGCYC 2 cut(s) 122, 856
Fsp4HI GCNGC 6 cut(s) 47, 396, 426, 486, 569, 675
FspBI CTAG 2 cut(s) 509, 942
GlaI GCGC 3 cut(s) 369, 647, 1044
GluI GCNGC 6 cut(s) 47, 396, 426, 486, 569, 675
GsuI CTGGAG 2 cut(s) 43, 608
HaeII RGCGCY 1 cut(s) 649
HaeIII GGCC 2 cut(s) 684, 755
HapII CCGG 3 cut(s) 489, 849, 857
HgaI GACGC 2 cut(s) 244, 854
HhaI GCGC 3 cut(s) 370, 648, 1045
Hin1I GRCGYC 6 cut(s) 255, 359, 646, 846, 1088, 1140
Hin1II CATG 4 cut(s) 94, 126, 439, 660
Hin6I GCGC 3 cut(s) 368, 646, 1043
HinP1I GCGC 3 cut(s) 368, 646, 1043
HincII GTYRAC 2 cut(s) 363, 1027
HindII GTYRAC 2 cut(s) 363, 1027
HinfI GANTC 4 cut(s) 777, 824, 929, 1172
HpaII CCGG 3 cut(s) 489, 849, 857
Hpy166II GTNNAC 4 cut(s) 363, 695, 979, 1027
Hpy188I TCNGA 6 cut(s) 298, 628, 900, 998, 1010, 1076
Hpy188III TCNNGA 8 cut(s) 86, 168, 308, 340, 587, 821, 1063, 1248
Hpy8I GTNNAC 4 cut(s) 363, 695, 979, 1027
HpyAV CCTTC 4 cut(s) 68, 106, 195, 415
HpyCH4III ACNGT 9 cut(s) 66, 527, 632, 640, 794, 882, 1019, 1069, 1235
HpyCH4IV ACGT 6 cut(s) 216, 359, 691, 1023, 1088, 1140
HpyCH4V TGCA 4 cut(s) 94, 204, 568, 1096
HpyF10VI GCNNNNNNNGC 3 cut(s) 425, 568, 652
HpyF3I CTNAG 4 cut(s) 225, 391, 763, 963
HpySE526I ACGT 6 cut(s) 216, 359, 691, 1023, 1088, 1140
Hsp92I GRCGYC 6 cut(s) 255, 359, 646, 846, 1088, 1140
Hsp92II CATG 4 cut(s) 94, 126, 439, 660
HspAI GCGC 3 cut(s) 368, 646, 1043
KasI GGCGCC 1 cut(s) 645
Kzo9I GATC 4 cut(s) 82, 817, 954, 993
LmnI GCTCC 5 cut(s) 280, 531, 589, 851, 859
Lsp1109I GCAGC 1 cut(s) 580
LweI GCATC 2 cut(s) 555, 1014
MaeI CTAG 2 cut(s) 509, 942
MaeII ACGT 6 cut(s) 216, 359, 691, 1023, 1088, 1140
MaeIII GTNAC 2 cut(s) 821, 1019
MalI GATC 4 cut(s) 84, 819, 956, 995
MbiI CCGCTC 1 cut(s) 534
MboI GATC 4 cut(s) 82, 817, 954, 993
MboII GAAGA 4 cut(s) 311, 514, 786, 1214
MflI RGATCY 1 cut(s) 82
MhlI GDGCHC 3 cut(s) 122, 804, 856
MluCI AATT 2 cut(s) 132, 1243
Mly113I GGCGCC 1 cut(s) 646
MlyI GAGTC 2 cut(s) 818, 1166
MmeI TCCRAC 1 cut(s) 217
MseI TTAA 3 cut(s) 68, 147, 1242
MspI CCGG 3 cut(s) 489, 849, 857
MspR9I CCNGG 3 cut(s) 573, 713, 1158
MvaI CCWGG 3 cut(s) 573, 713, 1158
MvnI CGCG 3 cut(s) 443, 1043, 1064
MwoI GCNNNNNNNGC 3 cut(s) 425, 568, 652
NarI GGCGCC 1 cut(s) 646
NcoI CCATGG 1 cut(s) 656
NdeII GATC 4 cut(s) 82, 817, 954, 993
NlaIII CATG 4 cut(s) 94, 126, 439, 660
NlaIV GGNNCC 2 cut(s) 647, 723
NmeAIII GCCGAG 1 cut(s) 231
NmuCI GTSAC 2 cut(s) 821, 1019
NruI TCGCGA 1 cut(s) 1064
NspI RCATGY 2 cut(s) 94, 439
PciI ACATGT 1 cut(s) 435
PcsI WCGNNNNNNNCGW 3 cut(s) 697, 1035, 1146
PfeI GAWTC 2 cut(s) 777, 929
PflFI GACNNNGTC 1 cut(s) 1139
PflMI CCANNNNNTGG 1 cut(s) 718
PkrI GCNGC 6 cut(s) 48, 397, 427, 487, 570, 676
Ple19I CGATCG 2 cut(s) 820, 996
PleI GAGTC 2 cut(s) 818, 1166
PluTI GGCGCC 1 cut(s) 649
PpsI GAGTC 2 cut(s) 818, 1166
PscI ACATGT 1 cut(s) 435
Psp124BI GAGCTC 2 cut(s) 122, 856
Psp6I CCWGG 3 cut(s) 571, 711, 1156
PspGI CCWGG 3 cut(s) 571, 711, 1156
PspN4I GGNNCC 2 cut(s) 647, 723
PspPI GGNCC 5 cut(s) 77, 190, 683, 721, 754
PsuI RGATCY 1 cut(s) 82
PsyI GACNNNGTC 1 cut(s) 1139
PvuI CGATCG 2 cut(s) 820, 996
RruI TCGCGA 1 cut(s) 1064
RsaI GTAC 3 cut(s) 440, 667, 884
RsaNI GTAC 3 cut(s) 439, 666, 883
SacI GAGCTC 2 cut(s) 122, 856
SalI GTCGAC 1 cut(s) 361
SaqAI TTAA 3 cut(s) 68, 147, 1242
SatI GCNGC 6 cut(s) 47, 396, 426, 486, 569, 675
Sau3AI GATC 4 cut(s) 82, 817, 954, 993
Sau96I GGNCC 5 cut(s) 77, 190, 683, 721, 754
SchI GAGTC 2 cut(s) 818, 1166
ScrFI CCNGG 3 cut(s) 573, 713, 1158
SduI GDGCHC 3 cut(s) 122, 804, 856
SfaNI GCATC 2 cut(s) 555, 1014
SfoI GGCGCC 1 cut(s) 647
SinI GGWCC 3 cut(s) 77, 190, 721
SmlI CTYRAG 1 cut(s) 238
SmoI CTYRAG 1 cut(s) 238
Sse9I AATT 2 cut(s) 132, 1243
SspDI GGCGCC 1 cut(s) 645
SspI AATATT 1 cut(s) 1228
SspMI CTAG 2 cut(s) 509, 942
SstI GAGCTC 2 cut(s) 122, 856
StyD4I CCNGG 3 cut(s) 571, 711, 1156
StyI CCWWGG 1 cut(s) 656
TaaI ACNGT 9 cut(s) 66, 527, 632, 640, 794, 882, 1019, 1069, 1235
TaiI ACGT 6 cut(s) 219, 362, 694, 1026, 1091, 1143
TaqI TCGA 2 cut(s) 362, 1149
TaqII GACCGA 1 cut(s) 178
TasI AATT 2 cut(s) 132, 1243
TauI GCSGC 5 cut(s) 49, 398, 428, 488, 677
TfiI GAWTC 2 cut(s) 777, 929
Tru1I TTAA 3 cut(s) 68, 147, 1242
Tru9I TTAA 3 cut(s) 68, 147, 1242
TscAI CASTG 1 cut(s) 885
TseFI GTSAC 2 cut(s) 821, 1019
TseI GCWGC 1 cut(s) 568
Tsp45I GTSAC 2 cut(s) 821, 1019
TspDTI ATGAA 2 cut(s) 143, 470
TspGWI ACGGA 5 cut(s) 274, 491, 853, 900, 1044
TspRI CASTG 1 cut(s) 885
Tth111I GACNNNGTC 1 cut(s) 1139
Van91I CCANNNNNTGG 1 cut(s) 718
VpaK11BI GGWCC 3 cut(s) 77, 190, 721
XceI RCATGY 2 cut(s) 94, 439
XmiI GTMKAC 1 cut(s) 362
XspI CTAG 2 cut(s) 509, 942
ZraI GACGTC 3 cut(s) 360, 1089, 1141
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.