Rroxscaffold_1G00055980

Protein of unknown function (DUF620)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0015065
Physical Location & Seq
Reverse (-)
77694019 .. 77696255
2237 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00055980.1

Sequence Viewer

Length: 1176 bp
ATGATGGGTTCAAAGGCAAGGAAGAAGCAGATGTGGTCTCCGCAGCCATTGACGCCACTCATGGAAGGTCCAGACCCAGAAATGCAAGAAGAAGGAGGTAAGAAGGAAAGCTCTTGGGAAGCCATACGTGAATGGTTCAGAGCACAAAAGGGTCTTCCTCAAGGAAGTAACTTATCAACTTCGGCATATGGAAGTAATGGTAGTACCATTCCGGCAAAGAGACAGGATTTGAGGCTCTTGCTTGGTGTGTTGGGCTGTCCTTTAGCTCCAATTCCTCAAGCCAGTGAGCCAGTTGATCATCCCATGCCCCACATCAAAGACATCCCATTTGAAACTTCGACTGCGCACTACATTATACAACAGTATCTGGCAGCAAGCGGGTGCTTGAAGCAGCAGAAGTGCAACAAGAACATGTATGCGAGTGGGATGGTGAAGATGGTCTGCTGTGAGACTGAGGTTTCTGCAGGTAGAAATGTGAAGACTTTGGGAACAAGAAGTGGGGAAAGTGGGTGCTTTGTTCTTTGGCAAATGTTACCCGGCATGTGGTCTCTGGAATTGGTGGTCGGCGGCAACAAGGTGGTGGCCGGAAGTGATGGAAAGACTGTGTGGAGGCACACCCCTTGGCTCGGCACTCATGCTGCCAAAGGCCCTCAACGCCCATTACGCCGCATCATCCAGACCCAAAGAGCACAGCAAGCTTGTTTGCCAAGGCACAATGCTTGGGGGGAGAAGAGGATTGGCGACGATGATTGCTTTGTATTAAAAGTTTCTGCAGACCGTGAGGCTGTAATGGAACGAAGCGAAGGTCCTGCAGAGGTAATTAGGCATGCATTGTACGGCTATTTCTGTCAAAAGAGTGGACTCCTCATCTACTTAGAGGACTCGCACCTCACTAGGGTTGAAACCCCAGAAAACGAAACTGTGTATTGGGAGACCACCATAGGAAGCAGCATTGCAGATTACAGAGATGTTGATGGTGTGCTCATCGCTCATCAAGGCCGTTCCATCGCCACCGTCTTCCGGTGTGGCGAGCTATCAATGGAGTATACGAGGACTAGAATGGAAGAGGTTTGGAACATTGATGATGTTGTGTTCAATGTGCCGGGGCTTTCCATGGACTATTTCATTGCTCCTGCTGATATATATGATAGTAGTAGTGCTGTACAATCACCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF620

Protein Analysis

391

Amino Acids

43.47

Weight (kDa)

6.33

Isoelectric Point (pI)

47.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF620 PF04788 138 - 378 9.8e-99 Protein of unknown function (DUF620)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015065)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G79420
fragaria_vesca FvH4_3g14040
malus_domestica MD05G1238500.v1.1 MD10G1216800.v1.1
prunus_persica Prupe.4G127900_v2.0.a1
pyrus_communis pycom05g21460
rosa_chinensis RchiOBHm_Chr5g0023361
rosa_laevigata RLG00000032716
rosa_multiflora Rmu_sc0007223.1_g000005
rosa_roxburghii Rroxscaffold_1G00055980
rosa_rugosa Rorug05G0078600
rosa_samantha Rh5AG165500 Rh5BG164700 Rh5CG179600 Rh5DG166200
rosa_wichuraiana Rw5G014890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 345
Acc36I ACCTGC 1 cut(s) 455
AccI GTMKAC 1 cut(s) 1046
AciI CCGC 4 cut(s) 41, 378, 567, 667
AcoI YGGCCR 1 cut(s) 582
AcyI GRCGYC 1 cut(s) 53
AfaI GTAC 3 cut(s) 205, 836, 1164
AfiI CCNNNNNNNGG 4 cut(s) 543, 626, 895, 1020
AflIII ACRYGT 1 cut(s) 411
AgsI TTSAA 5 cut(s) 12, 332, 388, 902, 1096
AluBI AGCT 4 cut(s) 111, 266, 698, 1033
AluI AGCT 4 cut(s) 111, 266, 698, 1033
Alw21I GWGCWC 3 cut(s) 145, 691, 984
Alw26I GTCTC 5 cut(s) 42, 214, 443, 552, 926
AlwNI CAGNNNCTG 1 cut(s) 367
AoxI GGCC 3 cut(s) 582, 646, 997
ApeKI GCWGC 5 cut(s) 43, 371, 391, 638, 948
ArsI GACNNNNNNTTYG 4 cut(s) 311, 343, 790, 822
AspLEI GCGC 1 cut(s) 346
AspS9I GGNCC 3 cut(s) 68, 647, 806
AsuC2I CCSGG 2 cut(s) 537, 1104
AsuHPI GGTGA 2 cut(s) 442, 1161
AvaII GGWCC 2 cut(s) 68, 806
BaeI ACNNNNGTAYC 2 cut(s) 347, 380
BbsI GAAGAC 3 cut(s) 146, 485, 1009
Bbv12I GWGCWC 3 cut(s) 145, 691, 984
BbvI GCAGC 5 cut(s) 55, 383, 403, 625, 960
BccI CCATC 5 cut(s) 421, 430, 587, 968, 1013
BceAI ACGGC 2 cut(s) 853, 984
BcgI CGANNNNNNTGC 2 cut(s) 791, 825
BclI TGATCA 1 cut(s) 295
BcnI CCSGG 2 cut(s) 537, 1104
BcoDI GTCTC 5 cut(s) 42, 214, 443, 552, 926
BfaI CTAG 2 cut(s) 894, 1056
BfmI CTRYAG 3 cut(s) 462, 771, 810
BfuAI ACCTGC 1 cut(s) 455
BisI GCNGC 7 cut(s) 44, 372, 392, 568, 639, 667, 949
BlsI GCNGC 7 cut(s) 45, 373, 393, 569, 640, 668, 950
Bme1390I CCNGG 2 cut(s) 537, 1104
Bme18I GGWCC 2 cut(s) 68, 806
BmgT120I GGNCC 3 cut(s) 68, 647, 806
BmrFI CCNGG 2 cut(s) 537, 1104
BmsI GCATC 1 cut(s) 678
BpiI GAAGAC 3 cut(s) 146, 485, 1009
BpuEI CTTGAG 2 cut(s) 144, 261
BpuMI CCSGG 2 cut(s) 537, 1104
BsaAI YACGTR 1 cut(s) 128
BsaHI GRCGYC 1 cut(s) 53
BsaI GGTCTC 3 cut(s) 42, 552, 926
BsaJI CCNNGG 4 cut(s) 620, 707, 1103, 1113
BsaWI WCCGGW 1 cut(s) 1020
Bsc4I CCNNNNNNNGG 4 cut(s) 543, 626, 895, 1020
Bse1I ACTGG 2 cut(s) 282, 290
Bse3DI GCAATG 2 cut(s) 951, 1125
BseDI CCNNGG 4 cut(s) 620, 707, 1103, 1113
BseGI GGATG 4 cut(s) 298, 321, 432, 672
BseLI CCNNNNNNNGG 4 cut(s) 543, 626, 895, 1020
BseMI GCAATG 2 cut(s) 951, 1125
BseMII CTCAG 1 cut(s) 444
BseNI ACTGG 2 cut(s) 282, 290
BseRI GAGGAG 1 cut(s) 854
BseXI GCAGC 5 cut(s) 55, 383, 403, 625, 960
BshFI GGCC 3 cut(s) 584, 648, 999
BsiHKAI GWGCWC 3 cut(s) 145, 691, 984
BsiSI CCGG 5 cut(s) 212, 537, 585, 1021, 1103
BslI CCNNNNNNNGG 4 cut(s) 543, 626, 895, 1020
BsmAI GTCTC 5 cut(s) 42, 214, 443, 552, 926
BsnI GGCC 3 cut(s) 584, 648, 999
Bso31I GGTCTC 3 cut(s) 42, 552, 926
Bsp1286I GDGCHC 3 cut(s) 145, 691, 984
Bsp1407I TGTACA 1 cut(s) 1162
Bsp143I GATC 1 cut(s) 295
Bsp19I CCATGG 1 cut(s) 1113
BspACI CCGC 4 cut(s) 41, 378, 567, 667
BspANI GGCC 3 cut(s) 584, 648, 999
BspCNI CTCAG 1 cut(s) 445
BspMAI CTGCAG 3 cut(s) 466, 775, 814
BspMI ACCTGC 1 cut(s) 455
BspTNI GGTCTC 3 cut(s) 42, 552, 926
BsrDI GCAATG 2 cut(s) 951, 1125
BsrGI TGTACA 1 cut(s) 1162
BsrI ACTGG 2 cut(s) 282, 290
BssECI CCNNGG 4 cut(s) 620, 707, 1103, 1113
BssMI GATC 1 cut(s) 295
BssNAI GTATAC 1 cut(s) 1047
BssNI GRCGYC 1 cut(s) 53
BssT1I CCWWGG 3 cut(s) 620, 707, 1113
Bst1107I GTATAC 1 cut(s) 1047
Bst4CI ACNGT 5 cut(s) 363, 604, 779, 922, 1015
Bst6I CTCTTC 2 cut(s) 725, 1059
BstACI GRCGYC 1 cut(s) 53
BstAUI TGTACA 1 cut(s) 1162
BstBAI YACGTR 1 cut(s) 128
BstC8I GCNNGC 4 cut(s) 376, 696, 828, 1031
BstDEI CTNAG 2 cut(s) 453, 874
BstDSI CCRYGG 1 cut(s) 1113
BstF5I GGATG 4 cut(s) 298, 321, 432, 672
BstHHI GCGC 1 cut(s) 346
BstKTI GATC 1 cut(s) 298
BstMAI GTCTC 5 cut(s) 42, 214, 443, 552, 926
BstMBI GATC 1 cut(s) 295
BstMWI GCNNNNNNNGC 4 cut(s) 52, 654, 663, 695
BstNSI RCATGY 3 cut(s) 415, 544, 830
BstSCI CCNGG 2 cut(s) 535, 1102
BstSFI CTRYAG 3 cut(s) 462, 771, 810
BstV1I GCAGC 5 cut(s) 55, 383, 403, 625, 960
BstV2I GAAGAC 3 cut(s) 146, 485, 1009
BstZ17I GTATAC 1 cut(s) 1047
BsuRI GGCC 3 cut(s) 584, 648, 999
BtgI CCRYGG 1 cut(s) 1113
BtgZI GCGATG 2 cut(s) 970, 991
BtsCI GGATG 4 cut(s) 298, 321, 432, 672
BtsIMutI CAGTG 1 cut(s) 289
BveI ACCTGC 1 cut(s) 455
Cac8I GCNNGC 4 cut(s) 376, 696, 828, 1031
CaiI CAGNNNCTG 1 cut(s) 367
CfoI GCGC 1 cut(s) 346
Cfr13I GGNCC 3 cut(s) 68, 647, 806
CseI GACGC 1 cut(s) 61
Csp6I GTAC 3 cut(s) 204, 835, 1163
CviAII CATG 8 cut(s) 61, 304, 412, 541, 635, 827, 1114, 1173
CviQI GTAC 3 cut(s) 204, 835, 1163
DdeI CTNAG 2 cut(s) 453, 874
DpnI GATC 1 cut(s) 297
DpnII GATC 1 cut(s) 295
EaeI YGGCCR 1 cut(s) 582
Eam1104I CTCTTC 2 cut(s) 725, 1059
EarI CTCTTC 2 cut(s) 725, 1059
Eco130I CCWWGG 3 cut(s) 620, 707, 1113
Eco31I GGTCTC 3 cut(s) 42, 552, 926
Eco47I GGWCC 2 cut(s) 68, 806
EcoO109I RGGNCCY 2 cut(s) 647, 806
EcoT14I CCWWGG 3 cut(s) 620, 707, 1113
EcoT22I ATGCAT 1 cut(s) 832
ErhI CCWWGG 3 cut(s) 620, 707, 1113
FaeI CATG 8 cut(s) 64, 307, 415, 544, 638, 830, 1117, 1176
FatI CATG 8 cut(s) 60, 303, 411, 540, 634, 826, 1113, 1172
FauI CCCGC 1 cut(s) 371
FauNDI CATATG 1 cut(s) 187
FbaI TGATCA 1 cut(s) 295
FblI GTMKAC 1 cut(s) 1046
Fnu4HI GCNGC 7 cut(s) 44, 372, 392, 568, 639, 667, 949
FokI GGATG 4 cut(s) 285, 308, 439, 659
Fsp4HI GCNGC 7 cut(s) 44, 372, 392, 568, 639, 667, 949
FspBI CTAG 2 cut(s) 894, 1056
FspI TGCGCA 1 cut(s) 345
GlaI GCGC 1 cut(s) 345
GluI GCNGC 7 cut(s) 44, 372, 392, 568, 639, 667, 949
HaeIII GGCC 3 cut(s) 584, 648, 999
HapII CCGG 5 cut(s) 212, 537, 585, 1021, 1103
HgaI GACGC 1 cut(s) 61
HhaI GCGC 1 cut(s) 346
Hin1I GRCGYC 1 cut(s) 53
Hin1II CATG 8 cut(s) 64, 307, 415, 544, 638, 830, 1117, 1176
Hin6I GCGC 1 cut(s) 344
HinP1I GCGC 1 cut(s) 344
HindIII AAGCTT 1 cut(s) 696
HinfI GANTC 2 cut(s) 861, 881
HpaII CCGG 5 cut(s) 212, 537, 585, 1021, 1103
HphI GGTGA 2 cut(s) 442, 1161
Hpy166II GTNNAC 2 cut(s) 860, 1047
Hpy188I TCNGA 1 cut(s) 140
Hpy188III TCNNGA 3 cut(s) 71, 551, 676
Hpy8I GTNNAC 2 cut(s) 860, 1047
Hpy99I CGWCG 1 cut(s) 746
HpyAV CCTTC 4 cut(s) 59, 86, 97, 797
HpyCH4III ACNGT 5 cut(s) 363, 604, 779, 922, 1015
HpyCH4IV ACGT 1 cut(s) 127
HpyCH4V TGCA 7 cut(s) 85, 402, 464, 773, 812, 830, 956
HpyF10VI GCNNNNNNNGC 4 cut(s) 52, 654, 663, 695
HpyF3I CTNAG 2 cut(s) 453, 874
HpySE526I ACGT 1 cut(s) 127
Hsp92I GRCGYC 1 cut(s) 53
Hsp92II CATG 8 cut(s) 64, 307, 415, 544, 638, 830, 1117, 1176
HspAI GCGC 1 cut(s) 344
Ksp22I TGATCA 1 cut(s) 295
Kzo9I GATC 1 cut(s) 295
LmnI GCTCC 2 cut(s) 271, 1135
Lsp1109I GCAGC 5 cut(s) 55, 383, 403, 625, 960
LweI GCATC 1 cut(s) 678
MaeI CTAG 2 cut(s) 894, 1056
MaeII ACGT 1 cut(s) 127
MaeIII GTNAC 2 cut(s) 167, 531
MalI GATC 1 cut(s) 297
MboI GATC 1 cut(s) 295
MboII GAAGA 8 cut(s) 34, 101, 146, 445, 490, 742, 1009, 1076
MhlI GDGCHC 3 cut(s) 145, 691, 984
MluCI AATT 3 cut(s) 270, 554, 819
MlyI GAGTC 2 cut(s) 855, 875
Mph1103I ATGCAT 1 cut(s) 832
MseI TTAA 1 cut(s) 761
MspI CCGG 5 cut(s) 212, 537, 585, 1021, 1103
MspR9I CCNGG 2 cut(s) 537, 1104
MwoI GCNNNNNNNGC 4 cut(s) 52, 654, 663, 695
NciI CCSGG 2 cut(s) 537, 1104
NcoI CCATGG 1 cut(s) 1113
NdeI CATATG 1 cut(s) 187
NdeII GATC 1 cut(s) 295
NlaIII CATG 8 cut(s) 64, 307, 415, 544, 638, 830, 1117, 1176
NmeAIII GCCGAG 1 cut(s) 606
NsbI TGCGCA 1 cut(s) 345
NsiI ATGCAT 1 cut(s) 832
NspI RCATGY 3 cut(s) 415, 544, 830
PaeI GCATGC 1 cut(s) 830
PciI ACATGT 1 cut(s) 411
PkrI GCNGC 7 cut(s) 45, 373, 393, 569, 640, 668, 950
PleI GAGTC 2 cut(s) 855, 875
PpsI GAGTC 2 cut(s) 855, 875
Ppu21I YACGTR 1 cut(s) 128
PpuMI RGGWCCY 1 cut(s) 806
PscI ACATGT 1 cut(s) 411
Psp5II RGGWCCY 1 cut(s) 806
PspPI GGNCC 3 cut(s) 68, 647, 806
PspPPI RGGWCCY 1 cut(s) 806
PstI CTGCAG 3 cut(s) 466, 775, 814
PstNI CAGNNNCTG 1 cut(s) 367
RsaI GTAC 3 cut(s) 205, 836, 1164
RsaNI GTAC 3 cut(s) 204, 835, 1163
SaqAI TTAA 1 cut(s) 761
SatI GCNGC 7 cut(s) 44, 372, 392, 568, 639, 667, 949
Sau3AI GATC 1 cut(s) 295
Sau96I GGNCC 3 cut(s) 68, 647, 806
SchI GAGTC 2 cut(s) 855, 875
ScrFI CCNGG 2 cut(s) 537, 1104
SduI GDGCHC 3 cut(s) 145, 691, 984
SfaNI GCATC 1 cut(s) 678
SfcI CTRYAG 3 cut(s) 462, 771, 810
SinI GGWCC 2 cut(s) 68, 806
SmlI CTYRAG 2 cut(s) 159, 276
SmoI CTYRAG 2 cut(s) 159, 276
SphI GCATGC 1 cut(s) 830
Sse9I AATT 3 cut(s) 270, 554, 819
SsiI CCGC 4 cut(s) 41, 378, 567, 667
SspMI CTAG 2 cut(s) 894, 1056
StyD4I CCNGG 2 cut(s) 535, 1102
StyI CCWWGG 3 cut(s) 620, 707, 1113
TaaI ACNGT 5 cut(s) 363, 604, 779, 922, 1015
TaiI ACGT 1 cut(s) 130
TaqI TCGA 1 cut(s) 338
TasI AATT 3 cut(s) 270, 554, 819
TatI WGTACW 1 cut(s) 1162
TauI GCSGC 2 cut(s) 570, 669
Tru1I TTAA 1 cut(s) 761
Tru9I TTAA 1 cut(s) 761
TscAI CASTG 1 cut(s) 289
TseI GCWGC 5 cut(s) 43, 371, 391, 638, 948
TspDTI ATGAA 1 cut(s) 1114
TspRI CASTG 1 cut(s) 289
VpaK11BI GGWCC 2 cut(s) 68, 806
XceI RCATGY 3 cut(s) 415, 544, 830
XmiI GTMKAC 1 cut(s) 1046
XspI CTAG 2 cut(s) 894, 1056
Zsp2I ATGCAT 1 cut(s) 832
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.