AT1G79510

Uncharacterized conserved protein (DUF2358)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0013249
Physical Location & Seq
Reverse (-)
29908013 .. 29909988
1976 bp
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UTR
Exon/CDS
Intron
AT1G79510.1

Sequence Viewer

Length: 828 bp
ATGGCGTTTCTTCTCCCCAATCTCTCTCCTTCTTTCCTTCTTCCGACCGGAAAATCACTCAAAGAGAAACCCATTTCCAACCAAGCTTTATCATCATCATCATCATCGTCCAATAGCTACGAGTTTGAAGAAGATAGTCTCTCTCCACTTTCTCTCTTTAGCGTCCAGGCTCCTCCTCCTGTTCGAGGTGCGCAGGTTAAGACCAAACCAAGTGCGCAGGATAAGTACCAGCACGGCAGCAAAGATGACTTCTACATCAATCTCGGTTTAGCTGTACGTACCCTTCGCGAAGATTTGCCTCTCCTCTTCACCAAAGATCTCAATTACGACATTTACAGGGATGATATAACATTAGTGGATCCAATGAACACGTTCTCTGGGATTGACAACTACAAATTGATCTTCTGGGCACTTAGATTTCATGGCAAGATTCTCTTCAGGGATATCTCACTTGAGATCTTCAGGGTTTGGCAACCATCAGAGAACATGATTCTCATCAGGTGGAATCTTAAAGGTGTACCTAGAGTCCCATGGGAGGCAAAGGGAGAGTTTCAGGGTACTTCTCGCTATAAACTCGACCGAAATGGCAAAATCTATGAGCATAAGGTCGATAACTTGGCCTTCAACTTCCCTCACCAGCTCAAACCTGCCACTTCTGTTTTGGATATGGTCACCGCTTGCCCTGCAAGTCCCAATCCAACTTTCATGTTTGGCGCCATGGATTCATACTCATCTTCTTGGATTGAGTTCTACAAAGCAGTGCAAAGGACACTAGACAAGCAAGAAGAGCAAATGCTTGTGCAAGACCATTTCGTCCCATGCTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2358

Protein Analysis

275

Amino Acids

31.45

Weight (kDa)

6.53

Isoelectric Point (pI)

42.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF2358 PF10184 91 - 201 1.7e-39 Uncharacterized conserved protein (DUF2358)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013249)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G79510 AT1G79510
fragaria_vesca FvH4_3g14540
malus_domestica MD05G1235700.v1.1 MD10G1212200.v1.1
prunus_persica Prupe.4G130800_v2.0.a1
pyrus_communis pycom05g21250 pycom10g17980
rosa_chinensis RchiOBHm_Chr5g0023911
rosa_laevigata RLG00000032748
rosa_multiflora Rmu_sc0004175.1_g000013
rosa_roxburghii Rroxscaffold_1G00055300
rosa_rugosa Rorug05G0080300
rosa_samantha Rh5AG170600 Rh5BG167700 Rh5CG183200 Rh5DG169800
rosa_wichuraiana Rw5G015430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 812
Acc16I TGCGCA 2 cut(s) 192, 216
Acc36I ACCTGC 2 cut(s) 184, 655
AccB1I GGYRCC 1 cut(s) 713
AccII CGCG 1 cut(s) 288
AciI CCGC 1 cut(s) 675
AclWI GGATC 2 cut(s) 353, 366
AcuI CTGAAG 2 cut(s) 421, 445
AcyI GRCGYC 1 cut(s) 714
AfaI GTAC 5 cut(s) 227, 276, 280, 519, 559
AfiI CCNNNNNNNGG 2 cut(s) 185, 535
AflIII ACRYGT 1 cut(s) 369
AgsI TTSAA 2 cut(s) 128, 625
AjnI CCWGG 1 cut(s) 165
AjuI GAANNNNNNNTTGG 2 cut(s) 686, 718
AluBI AGCT 4 cut(s) 86, 117, 272, 640
AluI AGCT 4 cut(s) 86, 117, 272, 640
Alw26I GTCTC 1 cut(s) 143
AlwI GGATC 2 cut(s) 353, 366
AoxI GGCC 1 cut(s) 618
ApeKI GCWGC 1 cut(s) 237
Asp700I GAANNNNTTC 1 cut(s) 371
AspLEI GCGC 3 cut(s) 193, 217, 716
AsuHPI GGTGA 3 cut(s) 301, 626, 664
BaeGI GKGCMC 1 cut(s) 412
BamHI GGATCC 1 cut(s) 358
BanI GGYRCC 1 cut(s) 713
BarI GAAGNNNNNNTAC 2 cut(s) 267, 299
BbvI GCAGC 1 cut(s) 249
BccI CCATC 1 cut(s) 484
BceAI ACGGC 1 cut(s) 250
BciT130I CCWGG 1 cut(s) 167
BcoDI GTCTC 1 cut(s) 143
BfaI CTAG 2 cut(s) 522, 773
BfoI RGCGCY 1 cut(s) 717
BfuAI ACCTGC 2 cut(s) 184, 655
BglII AGATCT 2 cut(s) 316, 456
BisI GCNGC 1 cut(s) 238
BlsI GCNGC 1 cut(s) 239
Bme1390I CCNGG 1 cut(s) 167
BmiI GGNNCC 3 cut(s) 171, 360, 715
BmrFI CCNGG 1 cut(s) 167
BpuEI CTTGAG 1 cut(s) 473
BsaAI YACGTR 1 cut(s) 278
BsaBI GATNNNNATC 1 cut(s) 494
BsaHI GRCGYC 1 cut(s) 714
BsaJI CCNNGG 2 cut(s) 530, 717
BsaWI WCCGGW 1 cut(s) 47
Bsc4I CCNNNNNNNGG 2 cut(s) 185, 535
Bse8I GATNNNNATC 1 cut(s) 494
BseBI CCWGG 1 cut(s) 167
BseDI CCNNGG 2 cut(s) 530, 717
BseGI GGATG 1 cut(s) 346
BseJI GATNNNNATC 1 cut(s) 494
BseLI CCNNNNNNNGG 2 cut(s) 185, 535
BseRI GAGGAG 3 cut(s) 162, 165, 293
BseSI GKGCMC 1 cut(s) 412
BseXI GCAGC 1 cut(s) 249
Bsh1236I CGCG 1 cut(s) 288
Bsh1285I CGRYCG 2 cut(s) 48, 580
BshFI GGCC 1 cut(s) 620
BshNI GGYRCC 1 cut(s) 713
BsiEI CGRYCG 2 cut(s) 48, 580
BsiSI CCGG 1 cut(s) 48
BslFI GGGAC 3 cut(s) 512, 675, 800
BslI CCNNNNNNNGG 2 cut(s) 185, 535
BsmAI GTCTC 1 cut(s) 143
BsmFI GGGAC 3 cut(s) 512, 675, 800
BsnI GGCC 1 cut(s) 620
Bsp1286I GDGCHC 1 cut(s) 412
Bsp143I GATC 4 cut(s) 316, 358, 399, 456
Bsp19I CCATGG 2 cut(s) 530, 717
Bsp68I TCGCGA 1 cut(s) 288
BspACI CCGC 1 cut(s) 675
BspANI GGCC 1 cut(s) 620
BspFNI CGCG 1 cut(s) 288
BspLI GGNNCC 3 cut(s) 171, 360, 715
BspMI ACCTGC 2 cut(s) 184, 655
BspPI GGATC 2 cut(s) 353, 366
BspQI GCTCTTC 1 cut(s) 780
BspT107I GGYRCC 1 cut(s) 713
BssECI CCNNGG 2 cut(s) 530, 717
BssMI GATC 4 cut(s) 316, 358, 399, 456
BssNI GRCGYC 1 cut(s) 714
BssT1I CCWWGG 2 cut(s) 530, 717
Bst2UI CCWGG 1 cut(s) 167
Bst6I CTCTTC 3 cut(s) 311, 440, 780
BstACI GRCGYC 1 cut(s) 714
BstBAI YACGTR 1 cut(s) 278
BstC8I GCNNGC 1 cut(s) 679
BstDEI CTNAG 1 cut(s) 413
BstDSI CCRYGG 2 cut(s) 530, 717
BstEII GGTNACC 1 cut(s) 670
BstENI CCTNNNNNAGG 1 cut(s) 183
BstF5I GGATG 1 cut(s) 346
BstFNI CGCG 1 cut(s) 288
BstH2I RGCGCY 1 cut(s) 717
BstHHI GCGC 3 cut(s) 193, 217, 716
BstKTI GATC 4 cut(s) 319, 361, 402, 459
BstMAI GTCTC 1 cut(s) 143
BstMBI GATC 4 cut(s) 316, 358, 399, 456
BstMCI CGRYCG 2 cut(s) 48, 580
BstMWI GCNNNNNNNGC 2 cut(s) 683, 787
BstNI CCWGG 1 cut(s) 167
BstPI GGTNACC 1 cut(s) 670
BstSCI CCNGG 1 cut(s) 165
BstSLI GKGCMC 1 cut(s) 412
BstSNI TACGTA 1 cut(s) 278
BstUI CGCG 1 cut(s) 288
BstV1I GCAGC 1 cut(s) 249
BstX2I RGATCY 3 cut(s) 316, 358, 456
BstYI RGATCY 3 cut(s) 316, 358, 456
BsuRI GGCC 1 cut(s) 620
BtgI CCRYGG 2 cut(s) 530, 717
BtsCI GGATG 1 cut(s) 346
BtsI GCAGTG 1 cut(s) 765
BtsIMutI CAGTG 1 cut(s) 765
BtuMI TCGCGA 1 cut(s) 288
BveI ACCTGC 2 cut(s) 184, 655
Cac8I GCNNGC 1 cut(s) 679
CfoI GCGC 3 cut(s) 193, 217, 716
CseI GACGC 1 cut(s) 151
Csp6I GTAC 5 cut(s) 226, 275, 279, 518, 558
CviAII CATG 6 cut(s) 422, 487, 531, 706, 718, 819
CviJI RGCY 6 cut(s) 86, 117, 170, 272, 620, 640
CviKI_1 RGCY 6 cut(s) 86, 117, 170, 272, 620, 640
CviQI GTAC 5 cut(s) 226, 275, 279, 518, 558
DdeI CTNAG 1 cut(s) 413
DinI GGCGCC 1 cut(s) 715
DpnI GATC 4 cut(s) 318, 360, 401, 458
DpnII GATC 4 cut(s) 316, 358, 399, 456
DrdI GACNNNNNNGTC 1 cut(s) 812
DseDI GACNNNNNNGTC 1 cut(s) 812
Eam1104I CTCTTC 3 cut(s) 311, 440, 780
EarI CTCTTC 3 cut(s) 311, 440, 780
Eco105I TACGTA 1 cut(s) 278
Eco130I CCWWGG 2 cut(s) 530, 717
Eco32I GATATC 1 cut(s) 445
Eco57I CTGAAG 2 cut(s) 421, 445
Eco91I GGTNACC 1 cut(s) 670
EcoNI CCTNNNNNAGG 1 cut(s) 183
EcoO65I GGTNACC 1 cut(s) 670
EcoRII CCWGG 1 cut(s) 165
EcoRV GATATC 1 cut(s) 445
EcoT14I CCWWGG 2 cut(s) 530, 717
EgeI GGCGCC 1 cut(s) 715
EheI GGCGCC 1 cut(s) 715
ErhI CCWWGG 2 cut(s) 530, 717
FaeI CATG 6 cut(s) 425, 490, 534, 709, 721, 822
FalI AAGNNNNNCTT 2 cut(s) 419, 451
FaqI GGGAC 3 cut(s) 512, 675, 800
FatI CATG 6 cut(s) 421, 486, 530, 705, 717, 818
Fnu4HI GCNGC 1 cut(s) 238
FokI GGATG 1 cut(s) 353
Fsp4HI GCNGC 1 cut(s) 238
FspBI CTAG 2 cut(s) 522, 773
FspI TGCGCA 2 cut(s) 192, 216
GlaI GCGC 3 cut(s) 192, 216, 715
GluI GCNGC 1 cut(s) 238
HaeII RGCGCY 1 cut(s) 717
HaeIII GGCC 1 cut(s) 620
HapII CCGG 1 cut(s) 48
HgaI GACGC 1 cut(s) 151
HhaI GCGC 3 cut(s) 193, 217, 716
Hin1I GRCGYC 1 cut(s) 714
Hin1II CATG 6 cut(s) 425, 490, 534, 709, 721, 822
Hin6I GCGC 3 cut(s) 191, 215, 714
HinP1I GCGC 3 cut(s) 191, 215, 714
HindIII AAGCTT 1 cut(s) 84
HinfI GANTC 5 cut(s) 430, 490, 505, 525, 722
HpaII CCGG 1 cut(s) 48
HphI GGTGA 3 cut(s) 301, 626, 664
Hpy166II GTNNAC 1 cut(s) 518
Hpy188I TCNGA 2 cut(s) 45, 481
Hpy188III TCNNGA 1 cut(s) 287
Hpy8I GTNNAC 1 cut(s) 518
HpyAV CCTTC 4 cut(s) 39, 47, 293, 631
HpyCH4IV ACGT 2 cut(s) 277, 371
HpyCH4V TGCA 3 cut(s) 686, 763, 802
HpyF10VI GCNNNNNNNGC 2 cut(s) 683, 787
HpyF3I CTNAG 1 cut(s) 413
HpySE526I ACGT 2 cut(s) 277, 371
Hsp92I GRCGYC 1 cut(s) 714
Hsp92II CATG 6 cut(s) 425, 490, 534, 709, 721, 822
HspAI GCGC 3 cut(s) 191, 215, 714
KasI GGCGCC 1 cut(s) 713
Kzo9I GATC 4 cut(s) 316, 358, 399, 456
LguI GCTCTTC 1 cut(s) 780
LmnI GCTCC 1 cut(s) 175
Lsp1109I GCAGC 1 cut(s) 249
MaeI CTAG 2 cut(s) 522, 773
MaeII ACGT 2 cut(s) 277, 371
MaeIII GTNAC 1 cut(s) 670
MalI GATC 4 cut(s) 318, 360, 401, 458
MboI GATC 4 cut(s) 316, 358, 399, 456
MflI RGATCY 3 cut(s) 316, 358, 456
MhlI GDGCHC 1 cut(s) 412
MluCI AATT 2 cut(s) 322, 395
Mly113I GGCGCC 1 cut(s) 714
MlyI GAGTC 1 cut(s) 534
MmeI TCCRAC 3 cut(s) 68, 102, 722
MnlI CCTC 7 cut(s) 179, 183, 186, 309, 314, 529, 642
MroXI GAANNNNTTC 1 cut(s) 371
MseI TTAA 2 cut(s) 198, 510
MspI CCGG 1 cut(s) 48
MspR9I CCNGG 1 cut(s) 167
MvaI CCWGG 1 cut(s) 167
MvnI CGCG 1 cut(s) 288
MwoI GCNNNNNNNGC 2 cut(s) 683, 787
NarI GGCGCC 1 cut(s) 714
NcoI CCATGG 2 cut(s) 530, 717
NdeII GATC 4 cut(s) 316, 358, 399, 456
NlaIII CATG 6 cut(s) 425, 490, 534, 709, 721, 822
NlaIV GGNNCC 3 cut(s) 171, 360, 715
NmuCI GTSAC 1 cut(s) 670
NruI TCGCGA 1 cut(s) 288
NsbI TGCGCA 2 cut(s) 192, 216
PciSI GCTCTTC 1 cut(s) 780
PdmI GAANNNNTTC 1 cut(s) 371
PfeI GAWTC 4 cut(s) 430, 490, 505, 722
PkrI GCNGC 1 cut(s) 239
PleI GAGTC 1 cut(s) 533
PluTI GGCGCC 1 cut(s) 717
PpsI GAGTC 1 cut(s) 533
Ppu21I YACGTR 1 cut(s) 278
Psp6I CCWGG 1 cut(s) 165
PspEI GGTNACC 1 cut(s) 670
PspGI CCWGG 1 cut(s) 165
PspN4I GGNNCC 3 cut(s) 171, 360, 715
PsuI RGATCY 3 cut(s) 316, 358, 456
RruI TCGCGA 1 cut(s) 288
RsaI GTAC 5 cut(s) 227, 276, 280, 519, 559
RsaNI GTAC 5 cut(s) 226, 275, 279, 518, 558
SapI GCTCTTC 1 cut(s) 780
SaqAI TTAA 2 cut(s) 198, 510
SatI GCNGC 1 cut(s) 238
Sau3AI GATC 4 cut(s) 316, 358, 399, 456
SchI GAGTC 1 cut(s) 534
ScrFI CCNGG 1 cut(s) 167
SduI GDGCHC 1 cut(s) 412
SfoI GGCGCC 1 cut(s) 715
SmlI CTYRAG 1 cut(s) 452
SmoI CTYRAG 1 cut(s) 452
SnaBI TACGTA 1 cut(s) 278
Sse9I AATT 2 cut(s) 322, 395
SsiI CCGC 1 cut(s) 675
SspDI GGCGCC 1 cut(s) 713
SspMI CTAG 2 cut(s) 522, 773
StyD4I CCNGG 1 cut(s) 165
StyI CCWWGG 2 cut(s) 530, 717
TaiI ACGT 2 cut(s) 280, 374
TaqI TCGA 3 cut(s) 184, 576, 609
TaqII GACCGA 1 cut(s) 594
TasI AATT 2 cut(s) 322, 395
TfiI GAWTC 4 cut(s) 430, 490, 505, 722
Tru1I TTAA 2 cut(s) 198, 510
Tru9I TTAA 2 cut(s) 198, 510
TscAI CASTG 1 cut(s) 765
TseFI GTSAC 1 cut(s) 670
TseI GCWGC 1 cut(s) 237
Tsp45I GTSAC 1 cut(s) 670
TspDTI ATGAA 4 cut(s) 380, 410, 694, 714
TspRI CASTG 1 cut(s) 765
XagI CCTNNNNNAGG 1 cut(s) 183
XcmI CCANNNNNNNNNTGG 1 cut(s) 658
XmnI GAANNNNTTC 1 cut(s) 371
XspI CTAG 2 cut(s) 522, 773
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.