Prupe.4G130800_v2.0.a1

Uncharacterized conserved protein (DUF2358)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0013249
Physical Location & Seq
Reverse (-)
7226522 .. 7227903
1382 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G130800.1

Sequence Viewer

Length: 780 bp
ATGGCTTTTCTTCTTCCAAATTTCTCTCCCTCTCTACTCCTCCAAACCAAATCAAAAGAAAAACCCATGAACCAGACACTTTCTCTGACAAAACCCAGCTTTTGTTTCTCTCATCTCTCTCCTCTGGCCAGCCTGCAGACACCCACTTTGTTGGAAGGGGCACAGCTTAACACCTCCAGGGTTGCGCAGGATAAGCAGCAAAGAGACGACTTTTATGTCAATCTTGGCGTTGCTGTACGCACTCTTCGTGAAGACGTCCCTTTAATTTTCTCCAAAGACCTTAATTATGACATTTATAGGGATGATATAACATTTACGGATCCCTTGAATACATTCACTGGCATTGAGAATTACAAACTCATCTTCTGGGCATTGAGATTTCATGGAAAGATTCTGTTCCGTGACATTTCACTTGAGGTTTATAGGATTTGGCAGCCTTCAGAGAATGTGATATTGATAAGGTGGAACATGAAGGGTGTTCCTCGGGTTCCATGGGAAGCACAGGGTCAGTTTCAGGGCACCTCGCGATATAAACTAGATCGAAAAGGCAAAATATATGAACACAAAGTCGATAACTTGGCATTTAATTTCCCGCAGAAGCTCAAACCAGCTGCATCAGTGTTAGATTTAGTGGCAGCATGCCCTCCTAGTCCTAACCTGACGTTTTTGTGGGGTCCTGCGGATGTGTACTCATCTTCATGGGTGGAGTTTTATCGAGCAGTGAGGGGGACTTTGCATCGAGATGGTTTCTTGCTTCCACAAGATGGTTTGGTTAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2358

Protein Analysis

260

Amino Acids

29.73

Weight (kDa)

9.13

Isoelectric Point (pI)

37.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013249)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G79510 AT1G79510
fragaria_vesca FvH4_3g14540
malus_domestica MD05G1235700.v1.1 MD10G1212200.v1.1
prunus_persica Prupe.4G130800_v2.0.a1
pyrus_communis pycom05g21250 pycom10g17980
rosa_chinensis RchiOBHm_Chr5g0023911
rosa_laevigata RLG00000032748
rosa_multiflora Rmu_sc0004175.1_g000013
rosa_roxburghii Rroxscaffold_1G00055300
rosa_rugosa Rorug05G0080300
rosa_samantha Rh5AG170600 Rh5BG167700 Rh5CG183200 Rh5DG169800
rosa_wichuraiana Rw5G015430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 215
AatII GACGTC 1 cut(s) 258
Acc16I TGCGCA 1 cut(s) 186
AccB1I GGYRCC 1 cut(s) 518
AccB7I CCANNNNNTGG 1 cut(s) 764
AccII CGCG 1 cut(s) 526
AciI CCGC 2 cut(s) 593, 680
AclWI GGATC 2 cut(s) 314, 327
AcoI YGGCCR 1 cut(s) 126
AcsI RAATTY 1 cut(s) 19
AcuI CTGAAG 1 cut(s) 423
AcyI GRCGYC 1 cut(s) 255
AfaI GTAC 2 cut(s) 237, 689
AfiI CCNNNNNNNGG 1 cut(s) 764
AgsI TTSAA 1 cut(s) 328
AjnI CCWGG 1 cut(s) 176
AluBI AGCT 5 cut(s) 99, 166, 601, 611, 777
AluI AGCT 5 cut(s) 99, 166, 601, 611, 777
Alw26I GTCTC 1 cut(s) 198
AlwI GGATC 2 cut(s) 314, 327
Ama87I CYCGRG 1 cut(s) 483
AoxI GGCC 1 cut(s) 126
ApeKI GCWGC 4 cut(s) 196, 433, 611, 635
ApoI RAATTY 1 cut(s) 19
ArsI GACNNNNNNTTYG 2 cut(s) 130, 162
Asp700I GAANNNNTTC 1 cut(s) 332
AspLEI GCGC 1 cut(s) 187
AspS9I GGNCC 1 cut(s) 674
AvaI CYCGRG 1 cut(s) 483
AvaII GGWCC 1 cut(s) 674
BaeGI GKGCMC 2 cut(s) 163, 521
BalI TGGCCA 1 cut(s) 128
BamHI GGATCC 1 cut(s) 319
BanI GGYRCC 1 cut(s) 518
BarI GAAGNNNNNNTAC 2 cut(s) 228, 260
BbsI GAAGAC 1 cut(s) 258
BbvI GCAGC 4 cut(s) 208, 445, 598, 647
BccI CCATC 2 cut(s) 737, 758
BciT130I CCWGG 1 cut(s) 178
BcoDI GTCTC 1 cut(s) 198
BfaI CTAG 2 cut(s) 536, 648
BfmI CTRYAG 1 cut(s) 134
BisI GCNGC 4 cut(s) 197, 434, 612, 636
BlsI GCNGC 4 cut(s) 198, 435, 613, 637
Bme1390I CCNGG 1 cut(s) 178
Bme18I GGWCC 1 cut(s) 674
BmeT110I CYCGRG 1 cut(s) 483
BmgT120I GGNCC 1 cut(s) 674
BmiI GGNNCC 4 cut(s) 321, 489, 520, 675
BmrFI CCNGG 1 cut(s) 178
BmsI GCATC 2 cut(s) 623, 745
BpiI GAAGAC 1 cut(s) 258
BpmI CTGGAG 1 cut(s) 160
BpuEI CTTGAG 1 cut(s) 434
BsaHI GRCGYC 1 cut(s) 255
BsaJI CCNNGG 3 cut(s) 177, 482, 491
Bsc4I CCNNNNNNNGG 1 cut(s) 764
Bse1I ACTGG 1 cut(s) 343
BseBI CCWGG 1 cut(s) 178
BseDI CCNNGG 3 cut(s) 177, 482, 491
BseGI GGATG 2 cut(s) 307, 688
BseLI CCNNNNNNNGG 1 cut(s) 764
BseNI ACTGG 1 cut(s) 343
BseRI GAGGAG 2 cut(s) 29, 111
BseSI GKGCMC 2 cut(s) 163, 521
BseXI GCAGC 4 cut(s) 208, 445, 598, 647
BseYI CCCAGC 1 cut(s) 95
Bsh1236I CGCG 1 cut(s) 526
BshFI GGCC 1 cut(s) 128
BshNI GGYRCC 1 cut(s) 518
BsiHKCI CYCGRG 1 cut(s) 483
BslFI GGGAC 2 cut(s) 242, 742
BslI CCNNNNNNNGG 1 cut(s) 764
BsmAI GTCTC 1 cut(s) 198
BsmBI CGTCTC 1 cut(s) 198
BsmFI GGGAC 2 cut(s) 242, 742
BsnI GGCC 1 cut(s) 128
BsoBI CYCGRG 1 cut(s) 483
Bsp1286I GDGCHC 2 cut(s) 163, 521
Bsp143I GATC 2 cut(s) 319, 538
Bsp19I CCATGG 1 cut(s) 491
Bsp68I TCGCGA 1 cut(s) 526
BspACI CCGC 2 cut(s) 593, 680
BspANI GGCC 1 cut(s) 128
BspFNI CGCG 1 cut(s) 526
BspLI GGNNCC 4 cut(s) 321, 489, 520, 675
BspMAI CTGCAG 1 cut(s) 138
BspPI GGATC 2 cut(s) 314, 327
BspT107I GGYRCC 1 cut(s) 518
BsrI ACTGG 1 cut(s) 343
BssECI CCNNGG 3 cut(s) 177, 482, 491
BssMI GATC 2 cut(s) 319, 538
BssNI GRCGYC 1 cut(s) 255
BssT1I CCWWGG 1 cut(s) 491
Bst2UI CCWGG 1 cut(s) 178
Bst6I CTCTTC 1 cut(s) 249
BstACI GRCGYC 1 cut(s) 255
BstC8I GCNNGC 3 cut(s) 130, 134, 640
BstDSI CCRYGG 1 cut(s) 491
BstF5I GGATG 2 cut(s) 307, 688
BstFNI CGCG 1 cut(s) 526
BstHHI GCGC 1 cut(s) 187
BstKTI GATC 2 cut(s) 322, 541
BstMAI GTCTC 1 cut(s) 198
BstMBI GATC 2 cut(s) 319, 538
BstMWI GCNNNNNNNGC 1 cut(s) 193
BstNI CCWGG 1 cut(s) 178
BstNSI RCATGY 1 cut(s) 642
BstSCI CCNGG 1 cut(s) 176
BstSFI CTRYAG 1 cut(s) 134
BstSLI GKGCMC 2 cut(s) 163, 521
BstUI CGCG 1 cut(s) 526
BstV1I GCAGC 4 cut(s) 208, 445, 598, 647
BstV2I GAAGAC 1 cut(s) 258
BstX2I RGATCY 1 cut(s) 319
BstXI CCANNNNNNTGG 1 cut(s) 151
BstYI RGATCY 1 cut(s) 319
BsuRI GGCC 1 cut(s) 128
BtgI CCRYGG 1 cut(s) 491
BtsCI GGATG 2 cut(s) 307, 688
BtsI GCAGTG 1 cut(s) 726
BtsIMutI CAGTG 3 cut(s) 336, 624, 726
BtuMI TCGCGA 1 cut(s) 526
Cac8I GCNNGC 3 cut(s) 130, 134, 640
CfoI GCGC 1 cut(s) 187
Cfr13I GGNCC 1 cut(s) 674
Csp6I GTAC 2 cut(s) 236, 688
CviAII CATG 6 cut(s) 67, 383, 469, 492, 639, 699
CviJI RGCY 9 cut(s) 5, 99, 128, 132, 166, 436, 601, 611, 777
CviKI_1 RGCY 9 cut(s) 5, 99, 128, 132, 166, 436, 601, 611, 777
CviQI GTAC 2 cut(s) 236, 688
DpnI GATC 2 cut(s) 321, 540
DpnII GATC 2 cut(s) 319, 538
DrdI GACNNNNNNGTC 1 cut(s) 215
DseDI GACNNNNNNGTC 1 cut(s) 215
EaeI YGGCCR 1 cut(s) 126
Eam1104I CTCTTC 1 cut(s) 249
EarI CTCTTC 1 cut(s) 249
Eco130I CCWWGG 1 cut(s) 491
Eco47I GGWCC 1 cut(s) 674
Eco57I CTGAAG 1 cut(s) 423
Eco88I CYCGRG 1 cut(s) 483
EcoO109I RGGNCCY 1 cut(s) 674
EcoRII CCWGG 1 cut(s) 176
EcoT14I CCWWGG 1 cut(s) 491
ErhI CCWWGG 1 cut(s) 491
Esp3I CGTCTC 1 cut(s) 198
FaeI CATG 6 cut(s) 70, 386, 472, 495, 642, 702
FaqI GGGAC 2 cut(s) 242, 742
FatI CATG 6 cut(s) 66, 382, 468, 491, 638, 698
FauI CCCGC 1 cut(s) 600
Fnu4HI GCNGC 4 cut(s) 197, 434, 612, 636
FokI GGATG 2 cut(s) 314, 695
Fsp4HI GCNGC 4 cut(s) 197, 434, 612, 636
FspBI CTAG 2 cut(s) 536, 648
FspI TGCGCA 1 cut(s) 186
GlaI GCGC 1 cut(s) 186
GluI GCNGC 4 cut(s) 197, 434, 612, 636
GsaI CCCAGC 1 cut(s) 99
GsuI CTGGAG 1 cut(s) 160
HaeIII GGCC 1 cut(s) 128
HhaI GCGC 1 cut(s) 187
Hin1I GRCGYC 1 cut(s) 255
Hin1II CATG 6 cut(s) 70, 386, 472, 495, 642, 702
Hin6I GCGC 1 cut(s) 185
HinP1I GCGC 1 cut(s) 185
HinfI GANTC 1 cut(s) 391
Hpy166II GTNNAC 1 cut(s) 688
Hpy188I TCNGA 2 cut(s) 87, 442
Hpy188III TCNNGA 3 cut(s) 248, 525, 740
Hpy8I GTNNAC 1 cut(s) 688
HpyAV CCTTC 3 cut(s) 149, 447, 466
HpyCH4IV ACGT 2 cut(s) 255, 662
HpyCH4V TGCA 3 cut(s) 136, 614, 736
HpyF10VI GCNNNNNNNGC 1 cut(s) 193
HpySE526I ACGT 2 cut(s) 255, 662
Hsp92I GRCGYC 1 cut(s) 255
Hsp92II CATG 6 cut(s) 70, 386, 472, 495, 642, 702
HspAI GCGC 1 cut(s) 185
Kzo9I GATC 2 cut(s) 319, 538
Lsp1109I GCAGC 4 cut(s) 208, 445, 598, 647
LweI GCATC 2 cut(s) 623, 745
MaeI CTAG 2 cut(s) 536, 648
MaeII ACGT 2 cut(s) 255, 662
MaeIII GTNAC 1 cut(s) 401
MalI GATC 2 cut(s) 321, 540
MboI GATC 2 cut(s) 319, 538
MboII GAAGA 5 cut(s) 5, 236, 263, 355, 687
MflI RGATCY 1 cut(s) 319
MhlI GDGCHC 2 cut(s) 163, 521
MlsI TGGCCA 1 cut(s) 128
MluCI AATT 5 cut(s) 19, 264, 283, 349, 586
MluNI TGGCCA 1 cut(s) 128
MmeI TCCRAC 1 cut(s) 132
MnlI CCTC 9 cut(s) 40, 50, 132, 184, 409, 492, 532, 654, 717
Mox20I TGGCCA 1 cut(s) 128
MroXI GAANNNNTTC 1 cut(s) 332
MscI TGGCCA 1 cut(s) 128
MseI TTAA 4 cut(s) 168, 263, 282, 585
MslI CAYNNNNRTG 2 cut(s) 697, 741
Msp20I TGGCCA 1 cut(s) 128
MspA1I CMGCKG 1 cut(s) 611
MspR9I CCNGG 1 cut(s) 178
MvaI CCWGG 1 cut(s) 178
MvnI CGCG 1 cut(s) 526
MwoI GCNNNNNNNGC 1 cut(s) 193
NcoI CCATGG 1 cut(s) 491
NdeII GATC 2 cut(s) 319, 538
NlaIII CATG 6 cut(s) 70, 386, 472, 495, 642, 702
NlaIV GGNNCC 4 cut(s) 321, 489, 520, 675
NmuCI GTSAC 1 cut(s) 401
NruI TCGCGA 1 cut(s) 526
NsbI TGCGCA 1 cut(s) 186
NspI RCATGY 1 cut(s) 642
PaeI GCATGC 1 cut(s) 642
PcsI WCGNNNNNNNCGW 1 cut(s) 244
PdmI GAANNNNTTC 1 cut(s) 332
PfeI GAWTC 1 cut(s) 391
PflMI CCANNNNNTGG 1 cut(s) 764
PkrI GCNGC 4 cut(s) 198, 435, 613, 637
PpuMI RGGWCCY 1 cut(s) 674
Psp5II RGGWCCY 1 cut(s) 674
Psp6I CCWGG 1 cut(s) 176
PspFI CCCAGC 1 cut(s) 95
PspGI CCWGG 1 cut(s) 176
PspN4I GGNNCC 4 cut(s) 321, 489, 520, 675
PspPI GGNCC 1 cut(s) 674
PspPPI RGGWCCY 1 cut(s) 674
PstI CTGCAG 1 cut(s) 138
PsuI RGATCY 1 cut(s) 319
PvuII CAGCTG 1 cut(s) 611
RruI TCGCGA 1 cut(s) 526
RsaI GTAC 2 cut(s) 237, 689
RsaNI GTAC 2 cut(s) 236, 688
RseI CAYNNNNRTG 2 cut(s) 697, 741
SaqAI TTAA 4 cut(s) 168, 263, 282, 585
SatI GCNGC 4 cut(s) 197, 434, 612, 636
Sau3AI GATC 2 cut(s) 319, 538
Sau96I GGNCC 1 cut(s) 674
ScrFI CCNGG 1 cut(s) 178
SduI GDGCHC 2 cut(s) 163, 521
SfaNI GCATC 2 cut(s) 623, 745
SfcI CTRYAG 1 cut(s) 134
SinI GGWCC 1 cut(s) 674
SmiMI CAYNNNNRTG 2 cut(s) 697, 741
SmlI CTYRAG 1 cut(s) 413
SmoI CTYRAG 1 cut(s) 413
SphI GCATGC 1 cut(s) 642
Sse9I AATT 5 cut(s) 19, 264, 283, 349, 586
SsiI CCGC 2 cut(s) 593, 680
SspMI CTAG 2 cut(s) 536, 648
StyD4I CCNGG 1 cut(s) 176
StyI CCWWGG 1 cut(s) 491
TaiI ACGT 2 cut(s) 258, 665
TaqI TCGA 4 cut(s) 541, 570, 715, 739
TasI AATT 5 cut(s) 19, 264, 283, 349, 586
TatI WGTACW 1 cut(s) 687
TfiI GAWTC 1 cut(s) 391
Tru1I TTAA 4 cut(s) 168, 263, 282, 585
Tru9I TTAA 4 cut(s) 168, 263, 282, 585
TscAI CASTG 3 cut(s) 343, 624, 726
TseFI GTSAC 1 cut(s) 401
TseI GCWGC 4 cut(s) 196, 433, 611, 635
Tsp45I GTSAC 1 cut(s) 401
TspDTI ATGAA 5 cut(s) 83, 371, 485, 573, 687
TspGWI ACGGA 2 cut(s) 332, 389
TspRI CASTG 3 cut(s) 343, 624, 726
Van91I CCANNNNNTGG 1 cut(s) 764
VpaK11BI GGWCC 1 cut(s) 674
XapI RAATTY 1 cut(s) 19
XceI RCATGY 1 cut(s) 642
XmnI GAANNNNTTC 1 cut(s) 332
XspI CTAG 2 cut(s) 536, 648
ZraI GACGTC 1 cut(s) 256
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.