FvH4_3g14540

Uncharacterized conserved protein (DUF2358)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0013249
Physical Location & Seq
Reverse (-)
8969058 .. 8970910
1853 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g14540.t1

Sequence Viewer

Length: 780 bp
ATGGCTTTTCTTCTACCCAATTTATCTCCTACTTTACTTCTCCAAACCAAGTTAAAGGAAAAACCAATTCACCACACACTTTCTCAGATAAGACCCAACTACTCTATGTCTCCTCTCACTCACCTGGCCAGTGTTCAGACCCCAACTCTATCGGAGGATGCGCAGGTTAACACCTCCAAGGGTGCGCAGGATAAGCAGGAAAGAGATGATTTTTATGTCAATCTTGGCCTGGCTGTTCGAACCCTTCGTGAAGATATGCCTTTGATTTTCGCTGAAGATCTTAATTATGACATTTACAGGGATGATATAACATTTATGGATCCTTTGAACACATTCACTGGGATTGAGAACTACAAGTTGATCTTCTGGGCATTGAGATTTCATGGCAAGATTCTGTTCCGTGACATCTCCCTTGAGGTTTATAGGATTTGGCAGCCTTCGGAGAATGTGATATTGATCAGGTGGAACATGAAGGGTGTTCCACGGGTTCCATGGGAAGCAAAGGGCCAGTTTCAGGGCACGTCGCGGTATAAATTGGATCGGAAAGGCAAGATTTATGAACATAAGGTTGATAATTTGGCGTTTAACTTCCCACAGAAGCTAAAACCGGCATCATCAGTGTTGGATTTAGTCACACCATGCCCAGCTAGCCCTAACTTGACATTCTTGTGGGGTCCTGCTGATGCTTACTCATCTTCGTGGTTGGAGTTCTATCGAGCAGTTAGGGGGACTTTGGATCGAGAAACTTTCTTGCTTCCACAAGATGGTTTGGCAAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2358

Protein Analysis

260

Amino Acids

29.87

Weight (kDa)

7.8

Isoelectric Point (pI)

39.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF2358 PF10184 78 - 188 8.9e-40 Uncharacterized conserved protein (DUF2358)
SnoaL_2 PF12680 97 - 188 8.4e-06 SnoaL-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013249)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G79510 AT1G79510
fragaria_vesca FvH4_3g14540
malus_domestica MD05G1235700.v1.1 MD10G1212200.v1.1
prunus_persica Prupe.4G130800_v2.0.a1
pyrus_communis pycom05g21250 pycom10g17980
rosa_chinensis RchiOBHm_Chr5g0023911
rosa_laevigata RLG00000032748
rosa_multiflora Rmu_sc0004175.1_g000013
rosa_roxburghii Rroxscaffold_1G00055300
rosa_rugosa Rorug05G0080300
rosa_samantha Rh5AG170600 Rh5BG167700 Rh5CG183200 Rh5DG169800
rosa_wichuraiana Rw5G015430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 2 cut(s) 162, 186
Acc36I ACCTGC 1 cut(s) 154
AccB7I CCANNNNNTGG 1 cut(s) 764
AccII CGCG 1 cut(s) 526
AciI CCGC 1 cut(s) 526
AclWI GGATC 4 cut(s) 314, 327, 546, 744
AcoI YGGCCR 1 cut(s) 126
AcuI CTGAAG 1 cut(s) 294
AfiI CCNNNNNNNGG 2 cut(s) 514, 764
AgsI TTSAA 1 cut(s) 328
AjiI CACGTC 1 cut(s) 522
AjnI CCWGG 2 cut(s) 123, 228
AluBI AGCT 3 cut(s) 601, 647, 777
AluI AGCT 3 cut(s) 601, 647, 777
Alw26I GTCTC 1 cut(s) 114
AlwI GGATC 4 cut(s) 314, 327, 546, 744
AoxI GGCC 3 cut(s) 126, 226, 505
ApeKI GCWGC 1 cut(s) 433
Asp700I GAANNNNTTC 1 cut(s) 332
AspLEI GCGC 2 cut(s) 163, 187
AspS9I GGNCC 2 cut(s) 505, 674
AsuHPI GGTGA 2 cut(s) 62, 113
AsuII TTCGAA 1 cut(s) 238
AsuNHI GCTAGC 1 cut(s) 647
AvaII GGWCC 1 cut(s) 674
BaeGI GKGCMC 1 cut(s) 521
BalI TGGCCA 1 cut(s) 128
BamHI GGATCC 1 cut(s) 319
BbvI GCAGC 1 cut(s) 445
BccI CCATC 1 cut(s) 758
BciT130I CCWGG 2 cut(s) 125, 230
BclI TGATCA 1 cut(s) 456
BcoDI GTCTC 1 cut(s) 114
BfaI CTAG 1 cut(s) 648
BfuAI ACCTGC 1 cut(s) 154
BglII AGATCT 1 cut(s) 277
BisI GCNGC 1 cut(s) 434
BlsI GCNGC 1 cut(s) 435
Bme1390I CCNGG 2 cut(s) 125, 230
Bme18I GGWCC 1 cut(s) 674
BmgBI CACGTC 1 cut(s) 522
BmgT120I GGNCC 2 cut(s) 505, 674
BmiI GGNNCC 3 cut(s) 321, 489, 675
BmrFI CCNGG 2 cut(s) 125, 230
BmrI ACTGGG 1 cut(s) 348
BmsI GCATC 3 cut(s) 148, 620, 673
BmtI GCTAGC 1 cut(s) 651
BmuI ACTGGG 1 cut(s) 348
Bpu14I TTCGAA 1 cut(s) 238
BpuEI CTTGAG 1 cut(s) 434
BsaBI GATNNNNATC 1 cut(s) 455
BsaJI CCNNGG 3 cut(s) 177, 482, 491
Bsc4I CCNNNNNNNGG 2 cut(s) 514, 764
Bse118I RCCGGY 1 cut(s) 607
Bse1I ACTGG 3 cut(s) 129, 343, 508
Bse8I GATNNNNATC 1 cut(s) 455
BseBI CCWGG 2 cut(s) 125, 230
BseDI CCNNGG 3 cut(s) 177, 482, 491
BseGI GGATG 2 cut(s) 163, 307
BseJI GATNNNNATC 1 cut(s) 455
BseLI CCNNNNNNNGG 2 cut(s) 514, 764
BseMII CTCAG 1 cut(s) 98
BseNI ACTGG 3 cut(s) 129, 343, 508
BseRI GAGGAG 1 cut(s) 102
BseSI GKGCMC 1 cut(s) 521
BseXI GCAGC 1 cut(s) 445
BseYI CCCAGC 1 cut(s) 643
Bsh1236I CGCG 1 cut(s) 526
BshFI GGCC 3 cut(s) 128, 228, 507
BsiSI CCGG 1 cut(s) 608
BslFI GGGAC 1 cut(s) 742
BslI CCNNNNNNNGG 2 cut(s) 514, 764
BsmAI GTCTC 1 cut(s) 114
BsmFI GGGAC 1 cut(s) 742
BsnI GGCC 3 cut(s) 128, 228, 507
Bsp119I TTCGAA 1 cut(s) 238
Bsp1286I GDGCHC 1 cut(s) 521
Bsp143I GATC 6 cut(s) 277, 319, 360, 456, 538, 736
Bsp19I CCATGG 1 cut(s) 491
BspACI CCGC 1 cut(s) 526
BspANI GGCC 3 cut(s) 128, 228, 507
BspCNI CTCAG 1 cut(s) 97
BspFNI CGCG 1 cut(s) 526
BspLI GGNNCC 3 cut(s) 321, 489, 675
BspMI ACCTGC 1 cut(s) 154
BspOI GCTAGC 1 cut(s) 651
BspPI GGATC 4 cut(s) 314, 327, 546, 744
BspT104I TTCGAA 1 cut(s) 238
BsrFI RCCGGY 1 cut(s) 607
BsrI ACTGG 3 cut(s) 129, 343, 508
BssAI RCCGGY 1 cut(s) 607
BssECI CCNNGG 3 cut(s) 177, 482, 491
BssMI GATC 6 cut(s) 277, 319, 360, 456, 538, 736
BssT1I CCWWGG 2 cut(s) 177, 491
Bst2UI CCWGG 2 cut(s) 125, 230
BstBI TTCGAA 1 cut(s) 238
BstC8I GCNNGC 2 cut(s) 649, 775
BstDEI CTNAG 1 cut(s) 84
BstDSI CCRYGG 2 cut(s) 482, 491
BstF5I GGATG 2 cut(s) 163, 307
BstFNI CGCG 1 cut(s) 526
BstHHI GCGC 2 cut(s) 163, 187
BstKTI GATC 6 cut(s) 280, 322, 363, 459, 541, 739
BstMAI GTCTC 1 cut(s) 114
BstMBI GATC 6 cut(s) 277, 319, 360, 456, 538, 736
BstMWI GCNNNNNNNGC 2 cut(s) 193, 648
BstNI CCWGG 2 cut(s) 125, 230
BstSCI CCNGG 2 cut(s) 123, 228
BstSLI GKGCMC 1 cut(s) 521
BstUI CGCG 1 cut(s) 526
BstV1I GCAGC 1 cut(s) 445
BstX2I RGATCY 2 cut(s) 277, 319
BstYI RGATCY 2 cut(s) 277, 319
BsuRI GGCC 3 cut(s) 128, 228, 507
BtgI CCRYGG 2 cut(s) 482, 491
BtrI CACGTC 1 cut(s) 522
BtsCI GGATG 2 cut(s) 163, 307
BtsIMutI CAGTG 3 cut(s) 136, 336, 624
BveI ACCTGC 1 cut(s) 154
Cac8I GCNNGC 2 cut(s) 649, 775
CfoI GCGC 2 cut(s) 163, 187
Cfr10I RCCGGY 1 cut(s) 607
Cfr13I GGNCC 2 cut(s) 505, 674
CviAII CATG 4 cut(s) 383, 469, 492, 639
DdeI CTNAG 1 cut(s) 84
DpnI GATC 6 cut(s) 279, 321, 362, 458, 540, 738
DpnII GATC 6 cut(s) 277, 319, 360, 456, 538, 736
EaeI YGGCCR 1 cut(s) 126
Eco130I CCWWGG 2 cut(s) 177, 491
Eco47I GGWCC 1 cut(s) 674
Eco57I CTGAAG 1 cut(s) 294
EcoO109I RGGNCCY 1 cut(s) 674
EcoRII CCWGG 2 cut(s) 123, 228
EcoT14I CCWWGG 2 cut(s) 177, 491
ErhI CCWWGG 2 cut(s) 177, 491
FaeI CATG 4 cut(s) 386, 472, 495, 642
FalI AAGNNNNNCTT 2 cut(s) 347, 379
FaqI GGGAC 1 cut(s) 742
FatI CATG 4 cut(s) 382, 468, 491, 638
FbaI TGATCA 1 cut(s) 456
Fnu4HI GCNGC 1 cut(s) 434
FokI GGATG 2 cut(s) 170, 314
Fsp4HI GCNGC 1 cut(s) 434
FspBI CTAG 1 cut(s) 648
FspI TGCGCA 2 cut(s) 162, 186
GlaI GCGC 2 cut(s) 162, 186
GluI GCNGC 1 cut(s) 434
GsaI CCCAGC 1 cut(s) 647
HaeIII GGCC 3 cut(s) 128, 228, 507
HapII CCGG 1 cut(s) 608
HhaI GCGC 2 cut(s) 163, 187
Hin1II CATG 4 cut(s) 386, 472, 495, 642
Hin6I GCGC 2 cut(s) 161, 185
HinP1I GCGC 2 cut(s) 161, 185
HincII GTYRAC 1 cut(s) 169
HindII GTYRAC 1 cut(s) 169
HinfI GANTC 1 cut(s) 391
HpaI GTTAAC 1 cut(s) 169
HpaII CCGG 1 cut(s) 608
HphI GGTGA 2 cut(s) 62, 113
Hpy166II GTNNAC 1 cut(s) 169
Hpy188I TCNGA 5 cut(s) 87, 138, 154, 442, 543
Hpy188III TCNNGA 2 cut(s) 248, 740
Hpy8I GTNNAC 1 cut(s) 169
Hpy99I CGWCG 1 cut(s) 526
HpyAV CCTTC 3 cut(s) 254, 447, 466
HpyCH4IV ACGT 1 cut(s) 521
HpyF10VI GCNNNNNNNGC 2 cut(s) 193, 648
HpyF3I CTNAG 1 cut(s) 84
HpySE526I ACGT 1 cut(s) 521
Hsp92II CATG 4 cut(s) 386, 472, 495, 642
HspAI GCGC 2 cut(s) 161, 185
Ksp22I TGATCA 1 cut(s) 456
KspAI GTTAAC 1 cut(s) 169
Kzo9I GATC 6 cut(s) 277, 319, 360, 456, 538, 736
Lsp1109I GCAGC 1 cut(s) 445
LweI GCATC 3 cut(s) 148, 620, 673
MaeI CTAG 1 cut(s) 648
MaeII ACGT 1 cut(s) 521
MaeIII GTNAC 2 cut(s) 401, 631
MalI GATC 6 cut(s) 279, 321, 362, 458, 540, 738
MboI GATC 6 cut(s) 277, 319, 360, 456, 538, 736
MboII GAAGA 4 cut(s) 263, 287, 355, 687
MflI RGATCY 2 cut(s) 277, 319
MhlI GDGCHC 1 cut(s) 521
MlsI TGGCCA 1 cut(s) 128
MluCI AATT 5 cut(s) 19, 66, 283, 533, 574
MluNI TGGCCA 1 cut(s) 128
MmeI TCCRAC 2 cut(s) 603, 684
MnlI CCTC 4 cut(s) 123, 148, 184, 409
Mox20I TGGCCA 1 cut(s) 128
MroXI GAANNNNTTC 1 cut(s) 332
MscI TGGCCA 1 cut(s) 128
MseI TTAA 4 cut(s) 53, 168, 282, 585
MslI CAYNNNNRTG 2 cut(s) 667, 697
Msp20I TGGCCA 1 cut(s) 128
MspI CCGG 1 cut(s) 608
MspR9I CCNGG 2 cut(s) 125, 230
MvaI CCWGG 2 cut(s) 125, 230
MvnI CGCG 1 cut(s) 526
MwoI GCNNNNNNNGC 2 cut(s) 193, 648
NcoI CCATGG 1 cut(s) 491
NdeII GATC 6 cut(s) 277, 319, 360, 456, 538, 736
NheI GCTAGC 1 cut(s) 647
NlaIII CATG 4 cut(s) 386, 472, 495, 642
NlaIV GGNNCC 3 cut(s) 321, 489, 675
NmuCI GTSAC 2 cut(s) 401, 631
NsbI TGCGCA 2 cut(s) 162, 186
NspV TTCGAA 1 cut(s) 238
PcsI WCGNNNNNNNCGW 1 cut(s) 244
PdmI GAANNNNTTC 1 cut(s) 332
PfeI GAWTC 1 cut(s) 391
PflMI CCANNNNNTGG 1 cut(s) 764
PkrI GCNGC 1 cut(s) 435
PpuMI RGGWCCY 1 cut(s) 674
Psp5II RGGWCCY 1 cut(s) 674
Psp6I CCWGG 2 cut(s) 123, 228
PspFI CCCAGC 1 cut(s) 643
PspGI CCWGG 2 cut(s) 123, 228
PspN4I GGNNCC 3 cut(s) 321, 489, 675
PspPI GGNCC 2 cut(s) 505, 674
PspPPI RGGWCCY 1 cut(s) 674
PsuI RGATCY 2 cut(s) 277, 319
RseI CAYNNNNRTG 2 cut(s) 667, 697
SaqAI TTAA 4 cut(s) 53, 168, 282, 585
SatI GCNGC 1 cut(s) 434
Sau3AI GATC 6 cut(s) 277, 319, 360, 456, 538, 736
Sau96I GGNCC 2 cut(s) 505, 674
ScrFI CCNGG 2 cut(s) 125, 230
SduI GDGCHC 1 cut(s) 521
SfaNI GCATC 3 cut(s) 148, 620, 673
SfuI TTCGAA 1 cut(s) 238
SinI GGWCC 1 cut(s) 674
SmiMI CAYNNNNRTG 2 cut(s) 667, 697
SmlI CTYRAG 1 cut(s) 413
SmoI CTYRAG 1 cut(s) 413
Sse9I AATT 5 cut(s) 19, 66, 283, 533, 574
SsiI CCGC 1 cut(s) 526
SspMI CTAG 1 cut(s) 648
StyD4I CCNGG 2 cut(s) 123, 228
StyI CCWWGG 2 cut(s) 177, 491
TaiI ACGT 1 cut(s) 524
TaqI TCGA 3 cut(s) 238, 715, 739
TasI AATT 5 cut(s) 19, 66, 283, 533, 574
TfiI GAWTC 1 cut(s) 391
Tru1I TTAA 4 cut(s) 53, 168, 282, 585
Tru9I TTAA 4 cut(s) 53, 168, 282, 585
TscAI CASTG 3 cut(s) 136, 343, 624
TseFI GTSAC 2 cut(s) 401, 631
TseI GCWGC 1 cut(s) 433
Tsp45I GTSAC 2 cut(s) 401, 631
TspDTI ATGAA 3 cut(s) 371, 485, 573
TspGWI ACGGA 1 cut(s) 389
TspRI CASTG 3 cut(s) 136, 343, 624
Van91I CCANNNNNTGG 1 cut(s) 764
VpaK11BI GGWCC 1 cut(s) 674
XcmI CCANNNNNNNNNTGG 1 cut(s) 489
XmnI GAANNNNTTC 1 cut(s) 332
XspI CTAG 1 cut(s) 648
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.