AT1G79780

Belongs to the Casparian strip membrane proteins (CASP) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0014226
Physical Location & Seq
Forward (+)
30015712 .. 30016856
1145 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G79780.1

Sequence Viewer

Length: 564 bp
ATGACGAGTAATGGAGAAGGGGGAGAGGTGGTGGCGAAGAGGAGGAGGAAGGGAATTAAGGAGCTAGTGCAGGTGGCTCTCAGGGGAGGTTGTTTGGCTGCTTCAGCCACGGCCATGGCGGTGATGCTGACCGCTACTGAGGAGGGAGTGGCAGACATCTACGGCTTCAAGCTCACTCTCTCCTCCAACTGGTCTTTCTCTCCCTCCTACCAGTATGTGGTGGGGGCATGCGCAGGGACCGTGCTCTACTCCCTGTTACAGCTCTGCCTCGGTGTTTACAGACTCGTCACCGGATCTCCCATCACGCCTTCCCGCTTCCAAGCTTGGCTTTGCTTCACCTCCGATCAGCTCTTTTGTTATTTGATGATGAGCGCTGGATCAGCCGGTTCCGGAGTTACCAACCTCAACAAAACCGGCATCAGGCACACTCCTCTCCCCGACTTCTGCAAGACCCTTTCTTCTTTCTGCAATCATGTCGCCCTGTCTCTCCTCTTAGTCTTCCTCTCCTTCATCTTCCTCGCTTCCTCTTCCTTCTTTACTGTCCTTGTGCTCTCCACTCCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0048037 GO:0051536 GO:0051540
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF588

Protein Analysis

187

Amino Acids

20.01

Weight (kDa)

8.9

Isoelectric Point (pI)

33.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CASP_dom PF04535 21 - 172 3.7e-38 Casparian strip membrane protein domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014226)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G79780 AT3G16300
fragaria_vesca FvH4_6g32160
malus_domestica MD09G1205900.v1.1
prunus_persica Prupe.3G061300_v2.0.a1 Prupe.3G065500_v2.0.a1
pyrus_communis pycom09g12270
rosa_chinensis RchiOBHm_Chr2g0140051
rosa_multiflora Rmu_sc0003365.1_g000011 Rmu_sc0012959.1_g000001
rosa_roxburghii Rroxscaffold_2G00105110
rosa_rugosa Rorug02G0360800
rosa_samantha Rh2AG411400 Rh2BG421600 Rh2CG397500 Rh2DG431100
rosa_wichuraiana Rw2G033700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 61
Acc16I TGCGCA 1 cut(s) 232
Acc36I ACCTGC 1 cut(s) 61
AccB7I CCANNNNNTGG 1 cut(s) 217
AccIII TCCGGA 1 cut(s) 389
AciI CCGC 3 cut(s) 119, 132, 313
AclWI GGATC 2 cut(s) 301, 385
AcoI YGGCCR 1 cut(s) 111
AcuI CTGAAG 1 cut(s) 87
AfeI AGCGCT 1 cut(s) 373
AfiI CCNNNNNNNGG 3 cut(s) 189, 217, 420
AgsI TTSAA 1 cut(s) 169
AjuI GAANNNNNNNTTGG 2 cut(s) 179, 211
AluBI AGCT 5 cut(s) 64, 172, 262, 323, 349
AluI AGCT 5 cut(s) 64, 172, 262, 323, 349
Alw21I GWGCWC 2 cut(s) 246, 552
Alw26I GTCTC 1 cut(s) 489
AlwI GGATC 2 cut(s) 301, 385
Aor13HI TCCGGA 1 cut(s) 389
Aor51HI AGCGCT 1 cut(s) 373
AoxI GGCC 1 cut(s) 111
ApeKI GCWGC 1 cut(s) 98
AspLEI GCGC 2 cut(s) 233, 374
AspS9I GGNCC 1 cut(s) 237
AsuHPI GGTGA 3 cut(s) 133, 280, 328
AvaII GGWCC 1 cut(s) 237
BbsI GAAGAC 1 cut(s) 490
Bbv12I GWGCWC 2 cut(s) 246, 552
BbvI GCAGC 1 cut(s) 85
BccI CCATC 1 cut(s) 308
BceAI ACGGC 2 cut(s) 126, 178
BcgI CGANNNNNNTGC 2 cut(s) 457, 491
BcoDI GTCTC 1 cut(s) 489
BfaI CTAG 2 cut(s) 65, 562
BfoI RGCGCY 1 cut(s) 375
BfuAI ACCTGC 1 cut(s) 61
BisI GCNGC 1 cut(s) 99
BlsI GCNGC 1 cut(s) 100
Bme18I GGWCC 1 cut(s) 237
BmgT120I GGNCC 1 cut(s) 237
BmiI GGNNCC 2 cut(s) 238, 388
BmsI GCATC 2 cut(s) 114, 426
BpiI GAAGAC 1 cut(s) 490
BsaJI CCNNGG 3 cut(s) 108, 114, 268
BsaWI WCCGGW 2 cut(s) 290, 389
BsaXI ACNNNNNCTCC 4 cut(s) 15, 45, 280, 310
Bsc4I CCNNNNNNNGG 3 cut(s) 189, 217, 420
Bse118I RCCGGY 2 cut(s) 383, 413
Bse1I ACTGG 2 cut(s) 194, 211
BseAI TCCGGA 1 cut(s) 389
BseDI CCNNGG 3 cut(s) 108, 114, 268
BseLI CCNNNNNNNGG 3 cut(s) 189, 217, 420
BseMII CTCAG 2 cut(s) 94, 129
BseNI ACTGG 2 cut(s) 194, 211
BseRI GAGGAG 6 cut(s) 55, 58, 155, 172, 420, 479
BseXI GCAGC 1 cut(s) 85
BsgI GTGCAG 1 cut(s) 89
BshFI GGCC 1 cut(s) 113
BsiHKAI GWGCWC 2 cut(s) 246, 552
BsiSI CCGG 4 cut(s) 291, 384, 390, 414
BslFI GGGAC 1 cut(s) 250
BslI CCNNNNNNNGG 3 cut(s) 189, 217, 420
BsmAI GTCTC 1 cut(s) 489
BsmFI GGGAC 1 cut(s) 250
BsnI GGCC 1 cut(s) 113
Bsp1286I GDGCHC 2 cut(s) 246, 552
Bsp13I TCCGGA 1 cut(s) 389
Bsp143I GATC 3 cut(s) 293, 343, 377
Bsp19I CCATGG 1 cut(s) 114
BspACI CCGC 3 cut(s) 119, 132, 313
BspANI GGCC 1 cut(s) 113
BspCNI CTCAG 2 cut(s) 93, 130
BspEI TCCGGA 1 cut(s) 389
BspLI GGNNCC 2 cut(s) 238, 388
BspMI ACCTGC 1 cut(s) 61
BspPI GGATC 2 cut(s) 301, 385
BsrFI RCCGGY 2 cut(s) 383, 413
BsrI ACTGG 2 cut(s) 194, 211
BssAI RCCGGY 2 cut(s) 383, 413
BssECI CCNNGG 3 cut(s) 108, 114, 268
BssMI GATC 3 cut(s) 293, 343, 377
BssT1I CCWWGG 1 cut(s) 114
Bst4CI ACNGT 2 cut(s) 241, 541
Bst6I CTCTTC 2 cut(s) 32, 532
BstC8I GCNNGC 1 cut(s) 229
BstDEI CTNAG 3 cut(s) 80, 138, 493
BstDSI CCRYGG 2 cut(s) 108, 114
BstH2I RGCGCY 1 cut(s) 375
BstHHI GCGC 2 cut(s) 233, 374
BstKTI GATC 3 cut(s) 296, 346, 380
BstMAI GTCTC 1 cut(s) 489
BstMBI GATC 3 cut(s) 293, 343, 377
BstMWI GCNNNNNNNGC 2 cut(s) 104, 380
BstNSI RCATGY 1 cut(s) 231
BstV1I GCAGC 1 cut(s) 85
BstV2I GAAGAC 1 cut(s) 490
BstX2I RGATCY 1 cut(s) 293
BstXI CCANNNNNNTGG 1 cut(s) 115
BstYI RGATCY 1 cut(s) 293
BsuRI GGCC 1 cut(s) 113
BtgI CCRYGG 2 cut(s) 108, 114
BveI ACCTGC 1 cut(s) 61
Cac8I GCNNGC 1 cut(s) 229
CfoI GCGC 2 cut(s) 233, 374
Cfr10I RCCGGY 2 cut(s) 383, 413
Cfr13I GGNCC 1 cut(s) 237
CviAII CATG 3 cut(s) 115, 228, 473
DdeI CTNAG 3 cut(s) 80, 138, 493
DpnI GATC 3 cut(s) 295, 345, 379
DpnII GATC 3 cut(s) 293, 343, 377
EaeI YGGCCR 1 cut(s) 111
Eam1104I CTCTTC 2 cut(s) 32, 532
EarI CTCTTC 2 cut(s) 32, 532
Eco130I CCWWGG 1 cut(s) 114
Eco47I GGWCC 1 cut(s) 237
Eco47III AGCGCT 1 cut(s) 373
Eco57I CTGAAG 1 cut(s) 87
EcoT14I CCWWGG 1 cut(s) 114
ErhI CCWWGG 1 cut(s) 114
FaeI CATG 3 cut(s) 118, 231, 476
FaiI YATR 4 cut(s) 116, 216, 229, 474
FalI AAGNNNNNCTT 2 cut(s) 312, 344
FaqI GGGAC 1 cut(s) 250
FatI CATG 3 cut(s) 114, 227, 472
FauI CCCGC 1 cut(s) 320
Fnu4HI GCNGC 1 cut(s) 99
Fsp4HI GCNGC 1 cut(s) 99
FspBI CTAG 2 cut(s) 65, 562
FspI TGCGCA 1 cut(s) 232
GlaI GCGC 2 cut(s) 232, 373
GluI GCNGC 1 cut(s) 99
HaeII RGCGCY 1 cut(s) 375
HaeIII GGCC 1 cut(s) 113
HapII CCGG 4 cut(s) 291, 384, 390, 414
HhaI GCGC 2 cut(s) 233, 374
Hin1II CATG 3 cut(s) 118, 231, 476
Hin6I GCGC 2 cut(s) 231, 372
HinP1I GCGC 2 cut(s) 231, 372
HindIII AAGCTT 1 cut(s) 321
HinfI GANTC 1 cut(s) 282
HpaII CCGG 4 cut(s) 291, 384, 390, 414
HphI GGTGA 3 cut(s) 133, 280, 328
Hpy166II GTNNAC 1 cut(s) 277
Hpy188I TCNGA 1 cut(s) 343
Hpy188III TCNNGA 1 cut(s) 390
Hpy8I GTNNAC 1 cut(s) 277
HpyAV CCTTC 5 cut(s) 11, 43, 318, 517, 541
HpyCH4III ACNGT 2 cut(s) 241, 541
HpyCH4V TGCA 3 cut(s) 70, 447, 468
HpyF10VI GCNNNNNNNGC 2 cut(s) 104, 380
HpyF3I CTNAG 3 cut(s) 80, 138, 493
Hsp92II CATG 3 cut(s) 118, 231, 476
HspAI GCGC 2 cut(s) 231, 372
Kpn2I TCCGGA 1 cut(s) 389
Kzo9I GATC 3 cut(s) 293, 343, 377
LmnI GCTCC 1 cut(s) 61
Lsp1109I GCAGC 1 cut(s) 85
LweI GCATC 2 cut(s) 114, 426
MaeI CTAG 2 cut(s) 65, 562
MaeIII GTNAC 3 cut(s) 255, 286, 394
MalI GATC 3 cut(s) 295, 345, 379
MboI GATC 3 cut(s) 293, 343, 377
MboII GAAGA 5 cut(s) 49, 450, 490, 505, 519
MflI RGATCY 1 cut(s) 293
MhlI GDGCHC 2 cut(s) 246, 552
MluCI AATT 1 cut(s) 54
MlyI GAGTC 1 cut(s) 276
MmeI TCCRAC 1 cut(s) 210
MroI TCCGGA 1 cut(s) 389
MseI TTAA 1 cut(s) 57
MslI CAYNNNNRTG 2 cut(s) 113, 119
MspI CCGG 4 cut(s) 291, 384, 390, 414
MwoI GCNNNNNNNGC 2 cut(s) 104, 380
NcoI CCATGG 1 cut(s) 114
NdeII GATC 3 cut(s) 293, 343, 377
NlaIII CATG 3 cut(s) 118, 231, 476
NlaIV GGNNCC 2 cut(s) 238, 388
NmuCI GTSAC 1 cut(s) 286
NsbI TGCGCA 1 cut(s) 232
NspI RCATGY 1 cut(s) 231
PaeI GCATGC 1 cut(s) 231
PaqCI CACCTGC 1 cut(s) 61
PflMI CCANNNNNTGG 1 cut(s) 217
PkrI GCNGC 1 cut(s) 100
PleI GAGTC 1 cut(s) 276
PpsI GAGTC 1 cut(s) 276
PspN4I GGNNCC 2 cut(s) 238, 388
PspPI GGNCC 1 cut(s) 237
PsuI RGATCY 1 cut(s) 293
RseI CAYNNNNRTG 2 cut(s) 113, 119
SaqAI TTAA 1 cut(s) 57
SatI GCNGC 1 cut(s) 99
Sau3AI GATC 3 cut(s) 293, 343, 377
Sau96I GGNCC 1 cut(s) 237
SchI GAGTC 1 cut(s) 276
SduI GDGCHC 2 cut(s) 246, 552
SfaNI GCATC 2 cut(s) 114, 426
SinI GGWCC 1 cut(s) 237
SmiMI CAYNNNNRTG 2 cut(s) 113, 119
SphI GCATGC 1 cut(s) 231
Sse9I AATT 1 cut(s) 54
SsiI CCGC 3 cut(s) 119, 132, 313
SspMI CTAG 2 cut(s) 65, 562
StyI CCWWGG 1 cut(s) 114
TaaI ACNGT 2 cut(s) 241, 541
TasI AATT 1 cut(s) 54
Tru1I TTAA 1 cut(s) 57
Tru9I TTAA 1 cut(s) 57
TseFI GTSAC 1 cut(s) 286
TseI GCWGC 1 cut(s) 98
Tsp45I GTSAC 1 cut(s) 286
TspDTI ATGAA 1 cut(s) 499
Van91I CCANNNNNTGG 1 cut(s) 217
VpaK11BI GGWCC 1 cut(s) 237
XceI RCATGY 1 cut(s) 231
XspI CTAG 2 cut(s) 65, 562
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.