FvH4_6g32160

Belongs to the Casparian strip membrane proteins (CASP) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0014226
Physical Location & Seq
Reverse (-)
25252918 .. 25255572
2655 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g32160.t1

Sequence Viewer

Length: 642 bp
ATGTTGGGCGGTAGGAAAACGACGGCTTGCGACGAAGAGGTGGCCGAGTCCAAGGCGGTGGAGAACGGAACCACCGCGAGTGTGCCGCAGGCGCCCAACTCATCATCATCTCAACTCGGCGCCTTGCTCCGTAAAGCTGACGTGGCTCACGTGTGCCTGAGGCTGCTCTGCATGGCGTCCTCCGTCACGGCGCTGTCGTCCATGCTCACCGCCCGGCAAGCCAGCATCGTCACCATCTACGGTTTCCACCTCCCCGTTTACTCCAAGTGGTCTTTCGCCCAGTCCTTCGTATACGTGGTTGGAGTTACGGCAGCTGTCACGGTTTATTCATTGCTGCAACTACTGATAAGTGGATCTAAGCTGGTGAGGAAGTCTCCGATGATTCCCTCAAGGAATCATGCCTGGGTTAGCTTTGCTGGGGATCAGGTATTTGCATATGCACTGATGAGCGCAGGGTCAGCTGCATCTGGAGTAAGCAACCTGAACCGCACAGGAATCCGGCACACACCACTCCCAAATTTTTGTAAACCGCTAAATATCTTCTGCAACCACATTGCCATCTCCATAGCCTTCACTTTCTTAAGCTGCCTCTTGCTGGCCACATCTGCTGTTCAGAGTGTCATCTGGCTCTCCAACAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0048037 GO:0051536 GO:0051540
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF588

Protein Analysis

214

Amino Acids

22.65

Weight (kDa)

9.44

Isoelectric Point (pI)

44.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CASP_dom PF04535 45 - 198 1.3e-37 Casparian strip membrane protein domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014226)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G79780 AT3G16300
fragaria_vesca FvH4_6g32160
malus_domestica MD09G1205900.v1.1
prunus_persica Prupe.3G061300_v2.0.a1 Prupe.3G065500_v2.0.a1
pyrus_communis pycom09g12270
rosa_chinensis RchiOBHm_Chr2g0140051
rosa_multiflora Rmu_sc0003365.1_g000011 Rmu_sc0012959.1_g000001
rosa_roxburghii Rroxscaffold_2G00105110
rosa_rugosa Rorug02G0360800
rosa_samantha Rh2AG411400 Rh2BG421600 Rh2CG397500 Rh2DG431100
rosa_wichuraiana Rw2G033700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 91, 119
AccI GTMKAC 1 cut(s) 291
AccII CGCG 1 cut(s) 77
AciI CCGC 7 cut(s) 9, 56, 75, 86, 210, 487, 530
AclWI GGATC 2 cut(s) 361, 429
AcoI YGGCCR 2 cut(s) 42, 597
AcsI RAATTY 1 cut(s) 517
AcvI CACGTG 1 cut(s) 151
AcyI GRCGYC 3 cut(s) 92, 120, 176
AfiI CCNNNNNNNGG 1 cut(s) 595
AflII CTTAAG 1 cut(s) 580
AflIII ACRYGT 1 cut(s) 150
AjiI CACGTC 1 cut(s) 142
AjnI CCWGG 1 cut(s) 401
AjuI GAANNNNNNNTTGG 2 cut(s) 257, 289
AluBI AGCT 6 cut(s) 137, 314, 361, 411, 461, 585
AluI AGCT 6 cut(s) 137, 314, 361, 411, 461, 585
Alw26I GTCTC 1 cut(s) 378
AlwI GGATC 2 cut(s) 361, 429
AoxI GGCC 2 cut(s) 42, 597
ApeKI GCWGC 5 cut(s) 163, 311, 334, 461, 585
ApoI RAATTY 1 cut(s) 517
AspLEI GCGC 4 cut(s) 94, 122, 193, 452
AsuC2I CCSGG 1 cut(s) 214
AsuHPI GGTGA 3 cut(s) 199, 223, 376
AxyI CCTNAGG 1 cut(s) 158
BalI TGGCCA 1 cut(s) 599
BanI GGYRCC 2 cut(s) 91, 119
BbrPI CACGTG 1 cut(s) 151
BbvI GCAGC 5 cut(s) 150, 321, 323, 448, 572
BccI CCATC 2 cut(s) 242, 566
BceAI ACGGC 3 cut(s) 39, 204, 324
BciT130I CCWGG 1 cut(s) 403
BcnI CCSGG 1 cut(s) 214
BcoDI GTCTC 1 cut(s) 378
BfoI RGCGCY 3 cut(s) 95, 123, 194
BfrI CTTAAG 1 cut(s) 580
BisI GCNGC 6 cut(s) 86, 164, 312, 335, 462, 586
BlsI GCNGC 6 cut(s) 87, 165, 313, 336, 463, 587
Bme1390I CCNGG 2 cut(s) 214, 403
BmgBI CACGTC 1 cut(s) 142
BmiI GGNNCC 3 cut(s) 70, 93, 121
BmrFI CCNGG 2 cut(s) 214, 403
BmrI ACTGGG 1 cut(s) 274
BmsI GCATC 2 cut(s) 234, 473
BmuI ACTGGG 1 cut(s) 274
BplI GAGNNNNNCTC 2 cut(s) 358, 390
BpmI CTGGAG 1 cut(s) 489
BpuEI CTTGAG 1 cut(s) 373
BpuMI CCSGG 1 cut(s) 214
BsaAI YACGTR 2 cut(s) 151, 295
BsaHI GRCGYC 3 cut(s) 92, 120, 176
BsaJI CCNNGG 2 cut(s) 51, 402
Bsc4I CCNNNNNNNGG 1 cut(s) 595
Bse1I ACTGG 1 cut(s) 280
Bse21I CCTNAGG 1 cut(s) 158
Bse3DI GCAATG 2 cut(s) 329, 552
BseBI CCWGG 1 cut(s) 403
BseDI CCNNGG 2 cut(s) 51, 402
BseLI CCNNNNNNNGG 1 cut(s) 595
BseMI GCAATG 2 cut(s) 329, 552
BseMII CTCAG 1 cut(s) 149
BseNI ACTGG 1 cut(s) 280
BseXI GCAGC 5 cut(s) 150, 321, 323, 448, 572
BseYI CCCAGC 1 cut(s) 416
Bsh1236I CGCG 1 cut(s) 77
BshFI GGCC 2 cut(s) 44, 599
BshNI GGYRCC 2 cut(s) 91, 119
BsiSI CCGG 2 cut(s) 214, 499
BslI CCNNNNNNNGG 1 cut(s) 595
BsmAI GTCTC 1 cut(s) 378
BsnI GGCC 2 cut(s) 44, 599
Bsp143I GATC 2 cut(s) 353, 421
BspACI CCGC 7 cut(s) 9, 56, 75, 86, 210, 487, 530
BspANI GGCC 2 cut(s) 44, 599
BspCNI CTCAG 1 cut(s) 150
BspFNI CGCG 1 cut(s) 77
BspLI GGNNCC 3 cut(s) 70, 93, 121
BspPI GGATC 2 cut(s) 361, 429
BspT107I GGYRCC 2 cut(s) 91, 119
BspTI CTTAAG 1 cut(s) 580
BsrDI GCAATG 2 cut(s) 329, 552
BsrI ACTGG 1 cut(s) 280
BssECI CCNNGG 2 cut(s) 51, 402
BssMI GATC 2 cut(s) 353, 421
BssNAI GTATAC 1 cut(s) 292
BssNI GRCGYC 3 cut(s) 92, 120, 176
BssT1I CCWWGG 1 cut(s) 51
Bst1107I GTATAC 1 cut(s) 292
Bst2UI CCWGG 1 cut(s) 403
Bst4CI ACNGT 2 cut(s) 242, 322
Bst6I CTCTTC 1 cut(s) 30
BstACI GRCGYC 3 cut(s) 92, 120, 176
BstAFI CTTAAG 1 cut(s) 580
BstBAI YACGTR 2 cut(s) 151, 295
BstC8I GCNNGC 5 cut(s) 28, 90, 219, 223, 597
BstDEI CTNAG 2 cut(s) 158, 357
BstFNI CGCG 1 cut(s) 77
BstH2I RGCGCY 3 cut(s) 95, 123, 194
BstHHI GCGC 4 cut(s) 94, 122, 193, 452
BstKTI GATC 2 cut(s) 356, 424
BstMAI GTCTC 1 cut(s) 378
BstMBI GATC 2 cut(s) 353, 421
BstMWI GCNNNNNNNGC 5 cut(s) 91, 143, 218, 458, 605
BstNI CCWGG 1 cut(s) 403
BstSCI CCNGG 2 cut(s) 212, 401
BstUI CGCG 1 cut(s) 77
BstV1I GCAGC 5 cut(s) 150, 321, 323, 448, 572
BstX2I RGATCY 1 cut(s) 353
BstXI CCANNNNNNTGG 1 cut(s) 58
BstYI RGATCY 1 cut(s) 353
BstZ17I GTATAC 1 cut(s) 292
Bsu36I CCTNAGG 1 cut(s) 158
BsuRI GGCC 2 cut(s) 44, 599
BtrI CACGTC 1 cut(s) 142
BtsIMutI CAGTG 1 cut(s) 440
Cac8I GCNNGC 5 cut(s) 28, 90, 219, 223, 597
CfoI GCGC 4 cut(s) 94, 122, 193, 452
CseI GACGC 1 cut(s) 165
CviAII CATG 3 cut(s) 172, 202, 398
DdeI CTNAG 2 cut(s) 158, 357
DinI GGCGCC 2 cut(s) 93, 121
DpnI GATC 2 cut(s) 355, 423
DpnII GATC 2 cut(s) 353, 421
EaeI YGGCCR 2 cut(s) 42, 597
Eam1104I CTCTTC 1 cut(s) 30
EarI CTCTTC 1 cut(s) 30
Eco130I CCWWGG 1 cut(s) 51
Eco72I CACGTG 1 cut(s) 151
Eco81I CCTNAGG 1 cut(s) 158
EcoRII CCWGG 1 cut(s) 401
EcoT14I CCWWGG 1 cut(s) 51
EgeI GGCGCC 2 cut(s) 93, 121
EheI GGCGCC 2 cut(s) 93, 121
ErhI CCWWGG 1 cut(s) 51
FaeI CATG 3 cut(s) 175, 205, 401
FaiI YATR 7 cut(s) 173, 203, 292, 399, 436, 438, 566
FatI CATG 3 cut(s) 171, 201, 397
FauNDI CATATG 1 cut(s) 436
FblI GTMKAC 1 cut(s) 291
Fnu4HI GCNGC 6 cut(s) 86, 164, 312, 335, 462, 586
Fsp4HI GCNGC 6 cut(s) 86, 164, 312, 335, 462, 586
GlaI GCGC 4 cut(s) 93, 121, 192, 451
GluI GCNGC 6 cut(s) 86, 164, 312, 335, 462, 586
GsaI CCCAGC 1 cut(s) 420
GsuI CTGGAG 1 cut(s) 489
HaeII RGCGCY 3 cut(s) 95, 123, 194
HaeIII GGCC 2 cut(s) 44, 599
HapII CCGG 2 cut(s) 214, 499
HgaI GACGC 1 cut(s) 165
HhaI GCGC 4 cut(s) 94, 122, 193, 452
Hin1I GRCGYC 3 cut(s) 92, 120, 176
Hin1II CATG 3 cut(s) 175, 205, 401
Hin6I GCGC 4 cut(s) 92, 120, 191, 450
HinP1I GCGC 4 cut(s) 92, 120, 191, 450
HinfI GANTC 4 cut(s) 47, 382, 394, 495
HpaII CCGG 2 cut(s) 214, 499
HphI GGTGA 3 cut(s) 199, 223, 376
Hpy166II GTNNAC 3 cut(s) 259, 292, 527
Hpy188I TCNGA 2 cut(s) 378, 615
Hpy188III TCNNGA 1 cut(s) 468
Hpy8I GTNNAC 3 cut(s) 259, 292, 527
Hpy99I CGWCG 2 cut(s) 25, 35
HpyAV CCTTC 2 cut(s) 295, 580
HpyCH4III ACNGT 2 cut(s) 242, 322
HpyCH4IV ACGT 3 cut(s) 141, 150, 294
HpyCH4V TGCA 6 cut(s) 171, 337, 434, 440, 464, 546
HpyF10VI GCNNNNNNNGC 5 cut(s) 91, 143, 218, 458, 605
HpyF3I CTNAG 2 cut(s) 158, 357
HpySE526I ACGT 3 cut(s) 141, 150, 294
Hsp92I GRCGYC 3 cut(s) 92, 120, 176
Hsp92II CATG 3 cut(s) 175, 205, 401
HspAI GCGC 4 cut(s) 92, 120, 191, 450
KasI GGCGCC 2 cut(s) 91, 119
Kzo9I GATC 2 cut(s) 353, 421
LmnI GCTCC 1 cut(s) 132
Lsp1109I GCAGC 5 cut(s) 150, 321, 323, 448, 572
LweI GCATC 2 cut(s) 234, 473
MaeII ACGT 3 cut(s) 141, 150, 294
MaeIII GTNAC 4 cut(s) 184, 229, 304, 316
MalI GATC 2 cut(s) 355, 423
MboI GATC 2 cut(s) 353, 421
MboII GAAGA 2 cut(s) 47, 532
MfeI CAATTG 1 cut(s) 637
MflI RGATCY 1 cut(s) 353
MlsI TGGCCA 1 cut(s) 599
MluCI AATT 2 cut(s) 517, 637
MluNI TGGCCA 1 cut(s) 599
Mly113I GGCGCC 2 cut(s) 92, 120
MlyI GAGTC 1 cut(s) 56
MmeI TCCRAC 1 cut(s) 280
MnlI CCTC 7 cut(s) 31, 153, 190, 260, 360, 397, 599
Mox20I TGGCCA 1 cut(s) 599
MscI TGGCCA 1 cut(s) 599
MseI TTAA 1 cut(s) 581
Msp20I TGGCCA 1 cut(s) 599
MspA1I CMGCKG 2 cut(s) 314, 461
MspCI CTTAAG 1 cut(s) 580
MspI CCGG 2 cut(s) 214, 499
MspR9I CCNGG 2 cut(s) 214, 403
MunI CAATTG 1 cut(s) 637
MvaI CCWGG 1 cut(s) 403
MvnI CGCG 1 cut(s) 77
MwoI GCNNNNNNNGC 5 cut(s) 91, 143, 218, 458, 605
NarI GGCGCC 2 cut(s) 92, 120
NciI CCSGG 1 cut(s) 214
NdeI CATATG 1 cut(s) 436
NdeII GATC 2 cut(s) 353, 421
NlaIII CATG 3 cut(s) 175, 205, 401
NlaIV GGNNCC 3 cut(s) 70, 93, 121
NmeAIII GCCGAG 2 cut(s) 70, 96
NmuCI GTSAC 3 cut(s) 184, 229, 316
PcsI WCGNNNNNNNCGW 2 cut(s) 147, 194
PfeI GAWTC 3 cut(s) 382, 394, 495
PkrI GCNGC 6 cut(s) 87, 165, 313, 336, 463, 587
PleI GAGTC 1 cut(s) 55
PluTI GGCGCC 2 cut(s) 95, 123
PmaCI CACGTG 1 cut(s) 151
PmlI CACGTG 1 cut(s) 151
PpsI GAGTC 1 cut(s) 55
Ppu21I YACGTR 2 cut(s) 151, 295
Psp6I CCWGG 1 cut(s) 401
PspCI CACGTG 1 cut(s) 151
PspFI CCCAGC 1 cut(s) 416
PspGI CCWGG 1 cut(s) 401
PspN4I GGNNCC 3 cut(s) 70, 93, 121
PsuI RGATCY 1 cut(s) 353
PvuII CAGCTG 2 cut(s) 314, 461
SaqAI TTAA 1 cut(s) 581
SatI GCNGC 6 cut(s) 86, 164, 312, 335, 462, 586
Sau3AI GATC 2 cut(s) 353, 421
SchI GAGTC 1 cut(s) 56
ScrFI CCNGG 2 cut(s) 214, 403
SfaNI GCATC 2 cut(s) 234, 473
SfoI GGCGCC 2 cut(s) 93, 121
SmlI CTYRAG 2 cut(s) 388, 580
SmoI CTYRAG 2 cut(s) 388, 580
Sse9I AATT 2 cut(s) 517, 637
SsiI CCGC 7 cut(s) 9, 56, 75, 86, 210, 487, 530
SspDI GGCGCC 2 cut(s) 91, 119
StyD4I CCNGG 2 cut(s) 212, 401
StyI CCWWGG 1 cut(s) 51
TaaI ACNGT 2 cut(s) 242, 322
TaiI ACGT 3 cut(s) 144, 153, 297
TasI AATT 2 cut(s) 517, 637
TauI GCSGC 1 cut(s) 88
TfiI GAWTC 3 cut(s) 382, 394, 495
Tru1I TTAA 1 cut(s) 581
Tru9I TTAA 1 cut(s) 581
TscAI CASTG 1 cut(s) 447
TseFI GTSAC 3 cut(s) 184, 229, 316
TseI GCWGC 5 cut(s) 163, 311, 334, 461, 585
Tsp45I GTSAC 3 cut(s) 184, 229, 316
TspDTI ATGAA 1 cut(s) 318
TspGWI ACGGA 3 cut(s) 81, 119, 172
TspRI CASTG 1 cut(s) 447
Vha464I CTTAAG 1 cut(s) 580
XapI RAATTY 1 cut(s) 517
XmiI GTMKAC 1 cut(s) 291
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.