Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003365.1

Orthogroup ID

OG0014226

Physical Location & Seq

Genomic Coordinates Forward (+)

44610 .. 44906

Gene Structure 297 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003365.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

atggtgaccggccggaaaacaacgtcgtgcgacgaagaaatggccgagtccaaggcggtggagaacggaacaaccaccatgagcactactgggcaggcgaccaagtcatcagctcaactcggcgccttgctccggaaggctgacgtggcgcatgtgtgcctcaggctgctctgcatggcgtcctccgtcacggcgctgtcgttcatggtcaccgcccagcaagccagcaccgtcactatctacggtttccatctccccgtttactccaagtggtctttctccgagtccttcgagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0048037 GO:0051536 GO:0051540

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF588

Protein Analysis

98

Amino Acids

10.52

Weight (kDa)

6.71

Isoelectric Point (pI)

38.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014226)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79780 AT3G16300
fragaria_vesca	FvH4_6g32160
malus_domestica	MD09G1205900.v1.1
prunus_persica	Prupe.3G061300_v2.0.a1 Prupe.3G065500_v2.0.a1
pyrus_communis	pycom09g12270
rosa_chinensis	RchiOBHm_Chr2g0140051
rosa_multiflora	Rmu_sc0003365.1_g000011 Rmu_sc0012959.1_g000001
rosa_roxburghii	Rroxscaffold_2G00105110
rosa_rugosa	Rorug02G0360800
rosa_samantha	Rh2AG411400 Rh2BG421600 Rh2CG397500 Rh2DG431100
rosa_wichuraiana	Rw2G033700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	122
AccIII	TCCGGA	1 cut(s)	132
AciI	CCGC	2 cut(s)	56, 213
AcoI	YGGCCR	2 cut(s)	10, 42
AcyI	GRCGYC	2 cut(s)	123, 179
AfiI	CCNNNNNNNGG	1 cut(s)	132
AjiI	CACGTC	1 cut(s)	145
AjuI	GAANNNNNNNTTGG	2 cut(s)	260, 292
AluBI	AGCT	1 cut(s)	113
AluI	AGCT	1 cut(s)	113
Alw21I	GWGCWC	1 cut(s)	86
Aor13HI	TCCGGA	1 cut(s)	132
AoxI	GGCC	2 cut(s)	10, 42
ApeKI	GCWGC	1 cut(s)	166
AspLEI	GCGC	3 cut(s)	125, 151, 196
AsuHPI	GGTGA	2 cut(s)	16, 202
AxyI	CCTNAGG	1 cut(s)	161
BanI	GGYRCC	1 cut(s)	122
Bbv12I	GWGCWC	1 cut(s)	86
BbvI	GCAGC	1 cut(s)	153
BccI	CCATC	1 cut(s)	258
BceAI	ACGGC	1 cut(s)	207
BfoI	RGCGCY	2 cut(s)	126, 197
BisI	GCNGC	1 cut(s)	167
BlsI	GCNGC	1 cut(s)	168
BmgBI	CACGTC	1 cut(s)	145
BmiI	GGNNCC	1 cut(s)	124
BmrI	ACTGGG	1 cut(s)	99
BmuI	ACTGGG	1 cut(s)	99
BsaHI	GRCGYC	2 cut(s)	123, 179
BsaJI	CCNNGG	1 cut(s)	51
BsaWI	WCCGGW	1 cut(s)	132
Bsc4I	CCNNNNNNNGG	1 cut(s)	132
Bse118I	RCCGGY	1 cut(s)	8
Bse1I	ACTGG	1 cut(s)	94
Bse21I	CCTNAGG	1 cut(s)	161
BseAI	TCCGGA	1 cut(s)	132
BseDI	CCNNGG	1 cut(s)	51
BseLI	CCNNNNNNNGG	1 cut(s)	132
BseMII	CTCAG	1 cut(s)	175
BseNI	ACTGG	1 cut(s)	94
BseX3I	CGGCCG	1 cut(s)	10
BseXI	GCAGC	1 cut(s)	153
BseYI	CCCAGC	1 cut(s)	216
Bsh1285I	CGRYCG	1 cut(s)	13
BshFI	GGCC	2 cut(s)	12, 44
BshNI	GGYRCC	1 cut(s)	122
BsiEI	CGRYCG	1 cut(s)	13
BsiHKAI	GWGCWC	1 cut(s)	86
BsiSI	CCGG	3 cut(s)	9, 13, 133
BslI	CCNNNNNNNGG	1 cut(s)	132
BsnI	GGCC	2 cut(s)	12, 44
Bsp1286I	GDGCHC	1 cut(s)	86
Bsp13I	TCCGGA	1 cut(s)	132
BspACI	CCGC	2 cut(s)	56, 213
BspANI	GGCC	2 cut(s)	12, 44
BspCNI	CTCAG	1 cut(s)	174
BspEI	TCCGGA	1 cut(s)	132
BspLI	GGNNCC	1 cut(s)	124
BspT107I	GGYRCC	1 cut(s)	122
BsrFI	RCCGGY	1 cut(s)	8
BsrI	ACTGG	1 cut(s)	94
BssAI	RCCGGY	1 cut(s)	8
BssECI	CCNNGG	1 cut(s)	51
BssNI	GRCGYC	2 cut(s)	123, 179
BssT1I	CCWWGG	1 cut(s)	51
Bst4CI	ACNGT	2 cut(s)	232, 245
BstACI	GRCGYC	2 cut(s)	123, 179
BstC8I	GCNNGC	3 cut(s)	96, 222, 226
BstDEI	CTNAG	1 cut(s)	161
BstEII	GGTNACC	2 cut(s)	4, 208
BstH2I	RGCGCY	2 cut(s)	126, 197
BstHHI	GCGC	3 cut(s)	125, 151, 196
BstMCI	CGRYCG	1 cut(s)	13
BstMWI	GCNNNNNNNGC	2 cut(s)	146, 221
BstNSI	RCATGY	1 cut(s)	155
BstPI	GGTNACC	2 cut(s)	4, 208
BstV1I	GCAGC	1 cut(s)	153
BstXI	CCANNNNNNTGG	1 cut(s)	58
BstZI	CGGCCG	1 cut(s)	10
Bsu36I	CCTNAGG	1 cut(s)	161
BsuRI	GGCC	2 cut(s)	12, 44
BtrI	CACGTC	1 cut(s)	145
Cac8I	GCNNGC	3 cut(s)	96, 222, 226
CfoI	GCGC	3 cut(s)	125, 151, 196
Cfr10I	RCCGGY	1 cut(s)	8
CseI	GACGC	1 cut(s)	168
CviAII	CATG	4 cut(s)	79, 152, 175, 205
CviJI	RGCY	6 cut(s)	12, 44, 113, 140, 166, 224
CviKI_1	RGCY	6 cut(s)	12, 44, 113, 140, 166, 224
DdeI	CTNAG	1 cut(s)	161
DinI	GGCGCC	1 cut(s)	124
EaeI	YGGCCR	2 cut(s)	10, 42
EagI	CGGCCG	1 cut(s)	10
EclXI	CGGCCG	1 cut(s)	10
Eco130I	CCWWGG	1 cut(s)	51
Eco52I	CGGCCG	1 cut(s)	10
Eco81I	CCTNAGG	1 cut(s)	161
Eco91I	GGTNACC	2 cut(s)	4, 208
EcoO65I	GGTNACC	2 cut(s)	4, 208
EcoT14I	CCWWGG	1 cut(s)	51
EgeI	GGCGCC	1 cut(s)	124
EheI	GGCGCC	1 cut(s)	124
ErhI	CCWWGG	1 cut(s)	51
FaeI	CATG	4 cut(s)	82, 155, 178, 208
FaiI	YATR	4 cut(s)	80, 153, 176, 206
FatI	CATG	4 cut(s)	78, 151, 174, 204
Fnu4HI	GCNGC	1 cut(s)	167
Fsp4HI	GCNGC	1 cut(s)	167
GlaI	GCGC	3 cut(s)	124, 150, 195
GluI	GCNGC	1 cut(s)	167
GsaI	CCCAGC	1 cut(s)	220
HaeII	RGCGCY	2 cut(s)	126, 197
HaeIII	GGCC	2 cut(s)	12, 44
HapII	CCGG	3 cut(s)	9, 13, 133
HgaI	GACGC	1 cut(s)	168
HhaI	GCGC	3 cut(s)	125, 151, 196
Hin1I	GRCGYC	2 cut(s)	123, 179
Hin1II	CATG	4 cut(s)	82, 155, 178, 208
Hin6I	GCGC	3 cut(s)	123, 149, 194
HinP1I	GCGC	3 cut(s)	123, 149, 194
HinfI	GANTC	2 cut(s)	47, 284
HpaII	CCGG	3 cut(s)	9, 13, 133
HphI	GGTGA	2 cut(s)	16, 202
Hpy166II	GTNNAC	1 cut(s)	262
Hpy188I	TCNGA	1 cut(s)	283
Hpy188III	TCNNGA	1 cut(s)	133
Hpy8I	GTNNAC	1 cut(s)	262
Hpy99I	CGWCG	2 cut(s)	28, 35
HpyAV	CCTTC	1 cut(s)	130
HpyCH4III	ACNGT	2 cut(s)	232, 245
HpyCH4IV	ACGT	2 cut(s)	23, 144
HpyCH4V	TGCA	1 cut(s)	174
HpyF10VI	GCNNNNNNNGC	2 cut(s)	146, 221
HpyF3I	CTNAG	1 cut(s)	161
HpySE526I	ACGT	2 cut(s)	23, 144
Hsp92I	GRCGYC	2 cut(s)	123, 179
Hsp92II	CATG	4 cut(s)	82, 155, 178, 208
HspAI	GCGC	3 cut(s)	123, 149, 194
KasI	GGCGCC	1 cut(s)	122
Kpn2I	TCCGGA	1 cut(s)	132
LmnI	GCTCC	1 cut(s)	135
LpnPI	CCDG	8 cut(s)	22, 26, 75, 80, 146, 148, 230, 238
Lsp1109I	GCAGC	1 cut(s)	153
MaeII	ACGT	2 cut(s)	23, 144
MaeIII	GTNAC	4 cut(s)	4, 187, 208, 232
MboII	GAAGA	1 cut(s)	47
MhlI	GDGCHC	1 cut(s)	86
Mly113I	GGCGCC	1 cut(s)	123
MlyI	GAGTC	2 cut(s)	56, 293
MnlI	CCTC	2 cut(s)	170, 193
MroI	TCCGGA	1 cut(s)	132
MspI	CCGG	3 cut(s)	9, 13, 133
MwoI	GCNNNNNNNGC	2 cut(s)	146, 221
NarI	GGCGCC	1 cut(s)	123
NlaIII	CATG	4 cut(s)	82, 155, 178, 208
NlaIV	GGNNCC	1 cut(s)	124
NmeAIII	GCCGAG	2 cut(s)	70, 99
NmuCI	GTSAC	4 cut(s)	4, 187, 208, 232
NspI	RCATGY	1 cut(s)	155
PcsI	WCGNNNNNNNCGW	1 cut(s)	197
PflFI	GACNNNGTC	1 cut(s)	103
PkrI	GCNGC	1 cut(s)	168
PleI	GAGTC	2 cut(s)	55, 292
PluTI	GGCGCC	1 cut(s)	126
PpsI	GAGTC	2 cut(s)	55, 292
PspEI	GGTNACC	2 cut(s)	4, 208
PspFI	CCCAGC	1 cut(s)	216
PspN4I	GGNNCC	1 cut(s)	124
PsyI	GACNNNGTC	1 cut(s)	103
SatI	GCNGC	1 cut(s)	167
SchI	GAGTC	2 cut(s)	56, 293
SduI	GDGCHC	1 cut(s)	86
SetI	ASST	3 cut(s)	26, 115, 147
SfoI	GGCGCC	1 cut(s)	124
SsiI	CCGC	2 cut(s)	56, 213
SspDI	GGCGCC	1 cut(s)	122
StyI	CCWWGG	1 cut(s)	51
TaaI	ACNGT	2 cut(s)	232, 245
TaiI	ACGT	2 cut(s)	26, 147
TaqI	TCGA	1 cut(s)	291
TseFI	GTSAC	4 cut(s)	4, 187, 208, 232
TseI	GCWGC	1 cut(s)	166
Tsp45I	GTSAC	4 cut(s)	4, 187, 208, 232
TspDTI	ATGAA	1 cut(s)	193
TspGWI	ACGGA	2 cut(s)	81, 175
Tth111I	GACNNNGTC	1 cut(s)	103
XceI	RCATGY	1 cut(s)	155

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.