AT1G79850

Belongs to the universal ribosomal protein uS17 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0016696
Physical Location & Seq
Reverse (-)
30041243 .. 30041952
710 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G79850.1

Sequence Viewer

Length: 450 bp
ATGATAACGTCGTCCCTAACCTCATCTCTGCAAGCTCTCAAGCTTTCGTCTCCGTTCGCCCATGGCTCCACTCCTCTCTCATCTCTCTCTAAGCCCAATTCCTTCCCGAACCACAGAATGCCCGCTTTAGTTCCGGTCATCAGAGCCATGAAAACGATGCAGGGGCGCGTGGTGTGCGCAACCAGTGACAAGACTGTGGCGGTGGAGGTGGTGAGGCTGGCTCCCCACCCCAAGTACAAGAGGCGCGTGAGGATGAAGAAGAAGTACCAAGCTCACGACCCCGATAATCAGTTCAAGGTTGGCGACGTGGTCAGACTGGAAAAGAGCAGACCCATCAGTAAGACTAAATCATTTGTGGCGCTTCCTGTCATCGCAAGGGCCGCCAGGAAAGCCGAAGCCGGAGGAGATGAACTCCTTGGCCTTCCCTTGGAGTCTCAGCAGCCGGCGTAG

Protein Analysis

149

Amino Acids

16.28

Weight (kDa)

10.57

Isoelectric Point (pI)

42.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S17 PF00366 55 - 120 1.2e-25 Ribosomal protein S17
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016696)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G79850
fragaria_vesca FvH4_6g31770 FvH4_6g31770
malus_domestica MD09G1209400.v1.1 MD17G1191100.v1.1
prunus_persica Prupe.3G067300_v2.0.a1
pyrus_communis pycom09g12560 pycom17g19820
rosa_chinensis RchiOBHm_Chr2g0138941
rosa_laevigata RLG00000019770
rosa_multiflora Rmu_sc0001376.1_g000003
rosa_roxburghii Rroxscaffold_2G00105850
rosa_rugosa Rorug02G0353400
rosa_wichuraiana Rw2G032820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 178
AccII CGCG 2 cut(s) 168, 246
AciI CCGC 3 cut(s) 123, 200, 381
AfaI GTAC 2 cut(s) 236, 266
AfiI CCNNNNNNNGG 1 cut(s) 427
AgsI TTSAA 1 cut(s) 295
AjiI CACGTC 1 cut(s) 307
AjnI CCWGG 1 cut(s) 383
AluBI AGCT 3 cut(s) 35, 43, 272
AluI AGCT 3 cut(s) 35, 43, 272
Alw26I GTCTC 2 cut(s) 54, 438
AoxI GGCC 2 cut(s) 378, 418
ApeKI GCWGC 1 cut(s) 439
AspLEI GCGC 4 cut(s) 168, 179, 246, 361
AspS9I GGNCC 1 cut(s) 378
AsuHPI GGTGA 1 cut(s) 223
BarI GAAGNNNNNNTAC 2 cut(s) 248, 280
BccI CCATC 1 cut(s) 341
BciT130I CCWGG 1 cut(s) 385
BcoDI GTCTC 2 cut(s) 54, 438
BfoI RGCGCY 1 cut(s) 362
BisI GCNGC 2 cut(s) 381, 440
BlsI GCNGC 2 cut(s) 382, 441
Bme1390I CCNGG 1 cut(s) 385
BmgBI CACGTC 1 cut(s) 307
BmgT120I GGNCC 1 cut(s) 378
BmiI GGNNCC 2 cut(s) 67, 222
BmrFI CCNGG 1 cut(s) 385
BmsI GCATC 1 cut(s) 147
BplI GAGNNNNNCTC 4 cut(s) 205, 237, 396, 428
BpuEI CTTGAG 1 cut(s) 23
BsaJI CCNNGG 3 cut(s) 61, 415, 426
BsaWI WCCGGW 1 cut(s) 133
Bsc4I CCNNNNNNNGG 1 cut(s) 427
Bse118I RCCGGY 1 cut(s) 442
Bse1I ACTGG 2 cut(s) 183, 321
BseBI CCWGG 1 cut(s) 385
BseDI CCNNGG 3 cut(s) 61, 415, 426
BseGI GGATG 1 cut(s) 258
BseLI CCNNNNNNNGG 1 cut(s) 427
BseMII CTCAG 1 cut(s) 449
BseNI ACTGG 2 cut(s) 183, 321
BseRI GAGGAG 2 cut(s) 63, 417
Bsh1236I CGCG 2 cut(s) 168, 246
BshFI GGCC 2 cut(s) 380, 420
BsiSI CCGG 3 cut(s) 134, 399, 443
BslI CCNNNNNNNGG 1 cut(s) 427
BsmAI GTCTC 2 cut(s) 54, 438
BsmBI CGTCTC 1 cut(s) 54
BsmI GAATGC 1 cut(s) 123
BsnI GGCC 2 cut(s) 380, 420
Bsp19I CCATGG 1 cut(s) 61
BspACI CCGC 3 cut(s) 123, 200, 381
BspANI GGCC 2 cut(s) 380, 420
BspCNI CTCAG 1 cut(s) 448
BspFNI CGCG 2 cut(s) 168, 246
BspLI GGNNCC 2 cut(s) 67, 222
BsrFI RCCGGY 1 cut(s) 442
BsrI ACTGG 2 cut(s) 183, 321
BssAI RCCGGY 1 cut(s) 442
BssECI CCNNGG 3 cut(s) 61, 415, 426
BssT1I CCWWGG 3 cut(s) 61, 415, 426
Bst2UI CCWGG 1 cut(s) 385
Bst4CI ACNGT 1 cut(s) 196
BstC8I GCNNGC 4 cut(s) 33, 123, 219, 444
BstDEI CTNAG 2 cut(s) 90, 435
BstDSI CCRYGG 1 cut(s) 61
BstF5I GGATG 1 cut(s) 258
BstFNI CGCG 2 cut(s) 168, 246
BstH2I RGCGCY 1 cut(s) 362
BstHHI GCGC 4 cut(s) 168, 179, 246, 361
BstMAI GTCTC 2 cut(s) 54, 438
BstMWI GCNNNNNNNGC 3 cut(s) 174, 380, 389
BstNI CCWGG 1 cut(s) 385
BstSCI CCNGG 1 cut(s) 383
BstUI CGCG 2 cut(s) 168, 246
BsuRI GGCC 2 cut(s) 380, 420
BtgI CCRYGG 1 cut(s) 61
BtgZI GCGATG 1 cut(s) 355
BtrI CACGTC 1 cut(s) 307
BtsCI GGATG 1 cut(s) 258
BtsIMutI CAGTG 1 cut(s) 190
Cac8I GCNNGC 4 cut(s) 33, 123, 219, 444
CfoI GCGC 4 cut(s) 168, 179, 246, 361
Cfr10I RCCGGY 1 cut(s) 442
Cfr13I GGNCC 1 cut(s) 378
Csp6I GTAC 2 cut(s) 235, 265
CviAII CATG 2 cut(s) 62, 148
CviQI GTAC 2 cut(s) 235, 265
DdeI CTNAG 2 cut(s) 90, 435
Eco130I CCWWGG 3 cut(s) 61, 415, 426
EcoRII CCWGG 1 cut(s) 383
EcoT14I CCWWGG 3 cut(s) 61, 415, 426
ErhI CCWWGG 3 cut(s) 61, 415, 426
Esp3I CGTCTC 1 cut(s) 54
FaeI CATG 2 cut(s) 65, 151
FaiI YATR 2 cut(s) 63, 149
FatI CATG 2 cut(s) 61, 147
FauI CCCGC 1 cut(s) 130
Fnu4HI GCNGC 2 cut(s) 381, 440
FokI GGATG 1 cut(s) 265
Fsp4HI GCNGC 2 cut(s) 381, 440
FspI TGCGCA 1 cut(s) 178
GlaI GCGC 4 cut(s) 167, 178, 245, 360
GluI GCNGC 2 cut(s) 381, 440
HaeII RGCGCY 1 cut(s) 362
HaeIII GGCC 2 cut(s) 380, 420
HapII CCGG 3 cut(s) 134, 399, 443
HhaI GCGC 4 cut(s) 168, 179, 246, 361
Hin1II CATG 2 cut(s) 65, 151
Hin6I GCGC 4 cut(s) 166, 177, 244, 359
HinP1I GCGC 4 cut(s) 166, 177, 244, 359
HindIII AAGCTT 1 cut(s) 41
HinfI GANTC 1 cut(s) 431
HpaII CCGG 3 cut(s) 134, 399, 443
HphI GGTGA 1 cut(s) 223
Hpy188I TCNGA 2 cut(s) 143, 314
Hpy188III TCNNGA 2 cut(s) 106, 275
Hpy99I CGWCG 2 cut(s) 13, 308
HpyAV CCTTC 2 cut(s) 112, 431
HpyCH4III ACNGT 1 cut(s) 196
HpyCH4IV ACGT 2 cut(s) 8, 306
HpyCH4V TGCA 2 cut(s) 31, 160
HpyF10VI GCNNNNNNNGC 3 cut(s) 174, 380, 389
HpyF3I CTNAG 2 cut(s) 90, 435
HpySE526I ACGT 2 cut(s) 8, 306
Hsp92II CATG 2 cut(s) 65, 151
HspAI GCGC 4 cut(s) 166, 177, 244, 359
KroI GCCGGC 1 cut(s) 442
KroNI GCCGGC 1 cut(s) 444
LmnI GCTCC 2 cut(s) 71, 226
LpnPI CCDG 9 cut(s) 146, 147, 196, 203, 302, 370, 378, 397, 412
LweI GCATC 1 cut(s) 147
MaeII ACGT 2 cut(s) 8, 306
MaeIII GTNAC 1 cut(s) 185
MboII GAAGA 2 cut(s) 268, 271
MluCI AATT 1 cut(s) 97
MlyI GAGTC 1 cut(s) 440
MnlI CCTC 7 cut(s) 31, 84, 199, 207, 234, 243, 395
MroNI GCCGGC 1 cut(s) 442
MspI CCGG 3 cut(s) 134, 399, 443
MspR9I CCNGG 1 cut(s) 385
Mva1269I GAATGC 1 cut(s) 123
MvaI CCWGG 1 cut(s) 385
MvnI CGCG 2 cut(s) 168, 246
MwoI GCNNNNNNNGC 3 cut(s) 174, 380, 389
NaeI GCCGGC 1 cut(s) 444
NcoI CCATGG 1 cut(s) 61
NgoMIV GCCGGC 1 cut(s) 442
NlaIII CATG 2 cut(s) 65, 151
NlaIV GGNNCC 2 cut(s) 67, 222
NmuCI GTSAC 1 cut(s) 185
NsbI TGCGCA 1 cut(s) 178
PctI GAATGC 1 cut(s) 123
PdiI GCCGGC 1 cut(s) 444
PflFI GACNNNGTC 1 cut(s) 308
PkrI GCNGC 2 cut(s) 382, 441
PleI GAGTC 1 cut(s) 439
PpsI GAGTC 1 cut(s) 439
Psp6I CCWGG 1 cut(s) 383
PspGI CCWGG 1 cut(s) 383
PspN4I GGNNCC 2 cut(s) 67, 222
PspPI GGNCC 1 cut(s) 378
PsyI GACNNNGTC 1 cut(s) 308
RsaI GTAC 2 cut(s) 236, 266
RsaNI GTAC 2 cut(s) 235, 265
SatI GCNGC 2 cut(s) 381, 440
Sau96I GGNCC 1 cut(s) 378
SchI GAGTC 1 cut(s) 440
ScrFI CCNGG 1 cut(s) 385
SetI ASST 8 cut(s) 11, 23, 37, 45, 210, 274, 300, 309
SfaNI GCATC 1 cut(s) 147
SmlI CTYRAG 1 cut(s) 38
SmoI CTYRAG 1 cut(s) 38
Sse9I AATT 1 cut(s) 97
SsiI CCGC 3 cut(s) 123, 200, 381
StyD4I CCNGG 1 cut(s) 383
StyI CCWWGG 3 cut(s) 61, 415, 426
TaaI ACNGT 1 cut(s) 196
TaiI ACGT 2 cut(s) 11, 309
TasI AATT 1 cut(s) 97
TatI WGTACW 1 cut(s) 234
TauI GCSGC 1 cut(s) 383
TscAI CASTG 1 cut(s) 190
TseFI GTSAC 1 cut(s) 185
TseI GCWGC 1 cut(s) 439
Tsp45I GTSAC 1 cut(s) 185
TspDTI ATGAA 3 cut(s) 164, 269, 423
TspGWI ACGGA 1 cut(s) 42
TspRI CASTG 1 cut(s) 190
Tth111I GACNNNGTC 1 cut(s) 308
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.