Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0016696

Physical Location & Seq

Genomic Coordinates Reverse (-)

29341522 .. 29342771

Gene Structure 1250 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00105850.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGAGTGCAACACTTCCTATCGAGCCTCCATCGAGCCATAGCACCAAAACACCCGTCCGGCAACATAATGCAACATTGGCAAGAGACCCGCGCGGCAGACACCCACCTCATCCCATCTCTCTTATCCTTTCATCCCTTTCTACCCAAAATCCCAAGACACTTTTTGTCAAACACCATCACAATGTCACTCACAGCTTCACTCCTCCCCTTCTCTCCTCCAAGCTCTCCACCCAATTCATCCATGGCTCTACTCCTCTCACTCTCCTCTCCAAACCCACTTCCTCTCTCTCCTTCCCAACCCCACTACGCCACACCTTCCTCCAACCCATCAAGGCCCTCAAGTACCTTCAAGGCCGAGTCGTCTGCTCCACCAACGACAAGACCGTCGCCGTGGAGGTCACTCGCTTAGCCCCTCACCCAAAGTACAAGAGGAGGGTGAGGAAGAAGAAGAAGTACCAGGCCCATGACCCGGATAACCAGTTCCAGGTTGGCGACGTGGTCCAGCTTGAGAAGAGCAGACCCATCAGCAAGACCAAGACTTTCATTGCCGTGCCGCTTCCGCCGAAGAATTTGAAGAAGAAATCCGGGGAGGAAGACGCGCCGAAGGAGCTTGGGATTCCTTTGGAGTCTCAGCAGGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000312 GO:0000313 GO:0000314 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009536 GO:0009547 GO:0009570 GO:0009579 GO:0009657 GO:0009941 GO:0009987 GO:0010467 GO:0015935 GO:0016043 GO:0019538 GO:0022626 GO:0022627 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032544 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0071840 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S17

Protein Analysis

213

Amino Acids

23.79

Weight (kDa)

10.39

Isoelectric Point (pI)

42.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S17	PF00366	118 - 183	1.3e-25	Ribosomal protein S17

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0016696)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79850
fragaria_vesca	FvH4_6g31770 FvH4_6g31770
malus_domestica	MD09G1209400.v1.1 MD17G1191100.v1.1
prunus_persica	Prupe.3G067300_v2.0.a1
pyrus_communis	pycom09g12560 pycom17g19820
rosa_chinensis	RchiOBHm_Chr2g0138941
rosa_laevigata	RLG00000019770
rosa_multiflora	Rmu_sc0001376.1_g000003
rosa_roxburghii	Rroxscaffold_2G00105850
rosa_rugosa	Rorug02G0353400
rosa_wichuraiana	Rw2G032820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	383
Acc36I	ACCTGC	1 cut(s)	625
AccII	CGCG	3 cut(s)	91, 93, 599
AciI	CCGC	4 cut(s)	89, 93, 554, 560
AcsI	RAATTY	1 cut(s)	568
AfaI	GTAC	3 cut(s)	344, 425, 455
AfiI	CCNNNNNNNGG	2 cut(s)	469, 484
AgsI	TTSAA	2 cut(s)	350, 574
AjiI	CACGTC	1 cut(s)	496
AjnI	CCWGG	2 cut(s)	456, 483
AloI	GAACNNNNNNTCC	2 cut(s)	464, 496
AluBI	AGCT	4 cut(s)	195, 223, 505, 610
AluI	AGCT	4 cut(s)	195, 223, 505, 610
Alw26I	GTCTC	2 cut(s)	78, 633
AoxI	GGCC	3 cut(s)	333, 352, 459
ApoI	RAATTY	1 cut(s)	568
ArsI	GACNNNNNNTTYG	2 cut(s)	39, 71
AspLEI	GCGC	2 cut(s)	93, 601
AspS9I	GGNCC	3 cut(s)	334, 460, 499
AsuC2I	CCSGG	2 cut(s)	470, 586
AsuHPI	GGTGA	2 cut(s)	407, 448
AvaII	GGWCC	1 cut(s)	499
BarI	GAAGNNNNNNTAC	2 cut(s)	437, 469
BbsI	GAAGAC	1 cut(s)	600
BccI	CCATC	5 cut(s)	37, 122, 183, 335, 530
BceAI	ACGGC	2 cut(s)	374, 533
BcgI	CGANNNNNNTGC	2 cut(s)	345, 379
BciT130I	CCWGG	2 cut(s)	458, 485
BcnI	CCSGG	2 cut(s)	470, 586
BcoDI	GTCTC	2 cut(s)	78, 633
BfuAI	ACCTGC	1 cut(s)	625
BisI	GCNGC	2 cut(s)	94, 554
BlpI	GCTNAGC	1 cut(s)	406
BlsI	GCNGC	2 cut(s)	95, 555
Bme1390I	CCNGG	4 cut(s)	458, 470, 485, 586
Bme18I	GGWCC	1 cut(s)	499
BmgBI	CACGTC	1 cut(s)	496
BmgT120I	GGNCC	3 cut(s)	334, 460, 499
BmrFI	CCNGG	4 cut(s)	458, 470, 485, 586
BpiI	GAAGAC	1 cut(s)	600
Bpu1102I	GCTNAGC	1 cut(s)	406
BpuEI	CTTGAG	2 cut(s)	323, 527
BpuMI	CCSGG	2 cut(s)	470, 586
BsaI	GGTCTC	1 cut(s)	78
BsaJI	CCNNGG	3 cut(s)	241, 390, 585
Bsc4I	CCNNNNNNNGG	2 cut(s)	469, 484
Bse1I	ACTGG	1 cut(s)	478
Bse3DI	GCAATG	1 cut(s)	543
BseBI	CCWGG	2 cut(s)	458, 485
BseDI	CCNNGG	3 cut(s)	241, 390, 585
BseGI	GGATG	3 cut(s)	109, 131, 237
BseLI	CCNNNNNNNGG	2 cut(s)	469, 484
BseMI	GCAATG	1 cut(s)	543
BseNI	ACTGG	1 cut(s)	478
BseRI	GAGGAG	5 cut(s)	192, 205, 243, 254, 445
Bsh1236I	CGCG	3 cut(s)	91, 93, 599
BshFI	GGCC	3 cut(s)	335, 354, 461
BsiSI	CCGG	3 cut(s)	58, 470, 585
BslI	CCNNNNNNNGG	2 cut(s)	469, 484
BsmAI	GTCTC	2 cut(s)	78, 633
BsnI	GGCC	3 cut(s)	335, 354, 461
Bso31I	GGTCTC	1 cut(s)	78
Bsp1720I	GCTNAGC	1 cut(s)	406
Bsp19I	CCATGG	1 cut(s)	241
BspACI	CCGC	4 cut(s)	89, 93, 554, 560
BspANI	GGCC	3 cut(s)	335, 354, 461
BspFNI	CGCG	3 cut(s)	91, 93, 599
BspMI	ACCTGC	1 cut(s)	625
BspQI	GCTCTTC	1 cut(s)	506
BspTNI	GGTCTC	1 cut(s)	78
BsrDI	GCAATG	1 cut(s)	543
BsrI	ACTGG	1 cut(s)	478
BssECI	CCNNGG	3 cut(s)	241, 390, 585
BssT1I	CCWWGG	1 cut(s)	241
Bst2UI	CCWGG	2 cut(s)	458, 485
Bst4CI	ACNGT	1 cut(s)	385
Bst6I	CTCTTC	1 cut(s)	506
BstDEI	CTNAG	2 cut(s)	406, 630
BstDSI	CCRYGG	2 cut(s)	241, 390
BstF5I	GGATG	3 cut(s)	109, 131, 237
BstFNI	CGCG	3 cut(s)	91, 93, 599
BstHHI	GCGC	2 cut(s)	93, 601
BstMAI	GTCTC	2 cut(s)	78, 633
BstMWI	GCNNNNNNNGC	3 cut(s)	77, 559, 607
BstNI	CCWGG	2 cut(s)	458, 485
BstSCI	CCNGG	4 cut(s)	456, 468, 483, 584
BstUI	CGCG	3 cut(s)	91, 93, 599
BstV2I	GAAGAC	1 cut(s)	600
BsuRI	GGCC	3 cut(s)	335, 354, 461
BtgI	CCRYGG	2 cut(s)	241, 390
BtrI	CACGTC	1 cut(s)	496
BtsCI	GGATG	3 cut(s)	109, 131, 237
BveI	ACCTGC	1 cut(s)	625
CfoI	GCGC	2 cut(s)	93, 601
Cfr13I	GGNCC	3 cut(s)	334, 460, 499
CseI	GACGC	1 cut(s)	605
Csp6I	GTAC	3 cut(s)	343, 424, 454
CviAII	CATG	2 cut(s)	242, 464
CviQI	GTAC	3 cut(s)	343, 424, 454
DdeI	CTNAG	2 cut(s)	406, 630
DrdI	GACNNNNNNGTC	1 cut(s)	383
DseDI	GACNNNNNNGTC	1 cut(s)	383
Eam1104I	CTCTTC	1 cut(s)	506
EarI	CTCTTC	1 cut(s)	506
EciI	GGCGGA	1 cut(s)	549
Eco130I	CCWWGG	1 cut(s)	241
Eco31I	GGTCTC	1 cut(s)	78
Eco47I	GGWCC	1 cut(s)	499
EcoO109I	RGGNCCY	1 cut(s)	334
EcoRII	CCWGG	2 cut(s)	456, 483
EcoT14I	CCWWGG	1 cut(s)	241
ErhI	CCWWGG	1 cut(s)	241
FaeI	CATG	2 cut(s)	245, 467
FaiI	YATR	4 cut(s)	39, 66, 243, 465
FatI	CATG	2 cut(s)	241, 463
FauI	CCCGC	1 cut(s)	96
Fnu4HI	GCNGC	2 cut(s)	94, 554
FokI	GGATG	3 cut(s)	96, 118, 224
Fsp4HI	GCNGC	2 cut(s)	94, 554
GlaI	GCGC	2 cut(s)	92, 600
GluI	GCNGC	2 cut(s)	94, 554
HaeIII	GGCC	3 cut(s)	335, 354, 461
HapII	CCGG	3 cut(s)	58, 470, 585
HgaI	GACGC	1 cut(s)	605
HhaI	GCGC	2 cut(s)	93, 601
Hin1II	CATG	2 cut(s)	245, 467
Hin6I	GCGC	2 cut(s)	91, 599
HinP1I	GCGC	2 cut(s)	91, 599
HinfI	GANTC	3 cut(s)	357, 616, 626
HpaII	CCGG	3 cut(s)	58, 470, 585
HphI	GGTGA	2 cut(s)	407, 448
Hpy99I	CGWCG	2 cut(s)	389, 497
HpyAV	CCTTC	5 cut(s)	218, 301, 325, 356, 598
HpyCH4III	ACNGT	1 cut(s)	385
HpyCH4IV	ACGT	1 cut(s)	495
HpyCH4V	TGCA	2 cut(s)	8, 71
HpyF10VI	GCNNNNNNNGC	3 cut(s)	77, 559, 607
HpyF3I	CTNAG	2 cut(s)	406, 630
HpySE526I	ACGT	1 cut(s)	495
Hsp92II	CATG	2 cut(s)	245, 467
HspAI	GCGC	2 cut(s)	91, 599
LguI	GCTCTTC	1 cut(s)	506
LmnI	GCTCC	2 cut(s)	371, 607
MaeII	ACGT	1 cut(s)	495
MaeIII	GTNAC	2 cut(s)	184, 397
MboII	GAAGA	8 cut(s)	454, 457, 460, 523, 577, 586, 589, 605
MluCI	AATT	2 cut(s)	233, 568
MlyI	GAGTC	2 cut(s)	366, 635
MmeI	TCCRAC	1 cut(s)	346
MslI	CAYNNNNRTG	2 cut(s)	180, 548
MspI	CCGG	3 cut(s)	58, 470, 585
MspR9I	CCNGG	4 cut(s)	458, 470, 485, 586
MvaI	CCWGG	2 cut(s)	458, 485
MvnI	CGCG	3 cut(s)	91, 93, 599
MwoI	GCNNNNNNNGC	3 cut(s)	77, 559, 607
NciI	CCSGG	2 cut(s)	470, 586
NcoI	CCATGG	1 cut(s)	241
NlaIII	CATG	2 cut(s)	245, 467
NmeAIII	GCCGAG	1 cut(s)	380
NmuCI	GTSAC	2 cut(s)	184, 397
PciSI	GCTCTTC	1 cut(s)	506
PcsI	WCGNNNNNNNCGW	1 cut(s)	381
PfeI	GAWTC	1 cut(s)	616
PflFI	GACNNNGTC	1 cut(s)	497
PkrI	GCNGC	2 cut(s)	95, 555
PleI	GAGTC	2 cut(s)	365, 634
PpsI	GAGTC	2 cut(s)	365, 634
Psp6I	CCWGG	2 cut(s)	456, 483
PspGI	CCWGG	2 cut(s)	456, 483
PspPI	GGNCC	3 cut(s)	334, 460, 499
PsyI	GACNNNGTC	1 cut(s)	497
RsaI	GTAC	3 cut(s)	344, 425, 455
RsaNI	GTAC	3 cut(s)	343, 424, 454
RseI	CAYNNNNRTG	2 cut(s)	180, 548
SapI	GCTCTTC	1 cut(s)	506
SatI	GCNGC	2 cut(s)	94, 554
Sau96I	GGNCC	3 cut(s)	334, 460, 499
SchI	GAGTC	2 cut(s)	366, 635
ScrFI	CCNGG	4 cut(s)	458, 470, 485, 586
SinI	GGWCC	1 cut(s)	499
SmiMI	CAYNNNNRTG	2 cut(s)	180, 548
SmlI	CTYRAG	2 cut(s)	338, 506
SmoI	CTYRAG	2 cut(s)	338, 506
Sse9I	AATT	2 cut(s)	233, 568
SsiI	CCGC	4 cut(s)	89, 93, 554, 560
StyD4I	CCNGG	4 cut(s)	456, 468, 483, 584
StyI	CCWWGG	1 cut(s)	241
TaaI	ACNGT	1 cut(s)	385
TaiI	ACGT	1 cut(s)	498
TaqI	TCGA	2 cut(s)	21, 32
TasI	AATT	2 cut(s)	233, 568
TatI	WGTACW	1 cut(s)	423
TauI	GCSGC	2 cut(s)	96, 556
TfiI	GAWTC	1 cut(s)	616
TseFI	GTSAC	2 cut(s)	184, 397
Tsp45I	GTSAC	2 cut(s)	184, 397
TspDTI	ATGAA	3 cut(s)	120, 226, 532
Tth111I	GACNNNGTC	1 cut(s)	497
VpaK11BI	GGWCC	1 cut(s)	499
XapI	RAATTY	1 cut(s)	568
XcmI	CCANNNNNNNNNTGG	2 cut(s)	239, 485

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.