Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0016696

Physical Location & Seq

Genomic Coordinates Forward (+)

24873147 .. 24874746

Gene Structure 1600 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g31770.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGTCACTCACAGCTTCACTCCTCCCCTTCTCCCCCACCAAGCTCTCCACCCAATTCCTCCATGGCTCAACGCCTCTCTCCTTCCTCTCCAAACCCACTTCCTCTCTCTCCTTCCCAACTCCACTCCGCCACACTTCCCTCCAACCCATCAAGGCCCTCAAGTACCTCCAGGGCCGAGTCGTCTGCTCCACCAACGACAAGACCGTCGCCGTGGAGGTCACTCGCTTAGCCCCCCACCCAAAATACAAGAGGAGGGTGAGGAAGAAGAAGAAGTACCAGGCCCATGACGAGAATAACCAGTTCCAGGTGGGTGACGTGGTGCAGCTTGAGAAGAGCAGACCCATCAGCAAGACCAAGACTTTCATTGCCGTGCCGCTTCCGCCCAAGAATGTGAAGAAGAAGGAGGAAGAGGGCACGAGCGAGCTGGGGATTCCTTTGGAGTCTCAGCAGGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000312 GO:0000313 GO:0000314 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009536 GO:0009547 GO:0009570 GO:0009579 GO:0009657 GO:0009941 GO:0009987 GO:0010467 GO:0015935 GO:0016043 GO:0019538 GO:0022626 GO:0022627 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032544 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0071840 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S17

Protein Analysis

152

Amino Acids

16.91

Weight (kDa)

10.12

Isoelectric Point (pI)

41.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S17	PF00366	58 - 123	2.7e-26	Ribosomal protein S17

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0016696)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79850
fragaria_vesca	FvH4_6g31770 FvH4_6g31770
malus_domestica	MD09G1209400.v1.1 MD17G1191100.v1.1
prunus_persica	Prupe.3G067300_v2.0.a1
pyrus_communis	pycom09g12560 pycom17g19820
rosa_chinensis	RchiOBHm_Chr2g0138941
rosa_laevigata	RLG00000019770
rosa_multiflora	Rmu_sc0001376.1_g000003
rosa_roxburghii	Rroxscaffold_2G00105850
rosa_rugosa	Rorug02G0353400
rosa_wichuraiana	Rw2G032820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	203
Acc36I	ACCTGC	1 cut(s)	439
AciI	CCGC	3 cut(s)	127, 374, 380
AfaI	GTAC	2 cut(s)	164, 275
AfiI	CCNNNNNNNGG	1 cut(s)	304
AjiI	CACGTC	1 cut(s)	316
AjnI	CCWGG	3 cut(s)	168, 276, 303
AluBI	AGCT	4 cut(s)	14, 43, 325, 424
AluI	AGCT	4 cut(s)	14, 43, 325, 424
Alw26I	GTCTC	1 cut(s)	447
AoxI	GGCC	3 cut(s)	153, 172, 279
ApeKI	GCWGC	1 cut(s)	322
AspS9I	GGNCC	3 cut(s)	154, 172, 280
AsuHPI	GGTGA	2 cut(s)	268, 323
BaeGI	GKGCMC	1 cut(s)	416
BarI	GAAGNNNNNNTAC	2 cut(s)	257, 289
BauI	CACGAG	1 cut(s)	415
BbvI	GCAGC	1 cut(s)	334
BccI	CCATC	2 cut(s)	155, 350
BceAI	ACGGC	2 cut(s)	194, 353
BcgI	CGANNNNNNTGC	2 cut(s)	165, 199
BciT130I	CCWGG	3 cut(s)	170, 278, 305
BcoDI	GTCTC	1 cut(s)	447
BfuAI	ACCTGC	1 cut(s)	439
BisI	GCNGC	2 cut(s)	323, 374
BlpI	GCTNAGC	1 cut(s)	226
BlsI	GCNGC	2 cut(s)	324, 375
Bme1390I	CCNGG	3 cut(s)	170, 278, 305
BmgBI	CACGTC	1 cut(s)	316
BmgT120I	GGNCC	3 cut(s)	154, 172, 280
BmrFI	CCNGG	3 cut(s)	170, 278, 305
BpmI	CTGGAG	1 cut(s)	152
Bpu1102I	GCTNAGC	1 cut(s)	226
BpuEI	CTTGAG	2 cut(s)	143, 347
BsaJI	CCNNGG	3 cut(s)	61, 169, 210
Bsc4I	CCNNNNNNNGG	1 cut(s)	304
Bse1I	ACTGG	1 cut(s)	298
Bse3DI	GCAATG	1 cut(s)	363
BseBI	CCWGG	3 cut(s)	170, 278, 305
BseDI	CCNNGG	3 cut(s)	61, 169, 210
BseLI	CCNNNNNNNGG	1 cut(s)	304
BseMI	GCAATG	1 cut(s)	363
BseNI	ACTGG	1 cut(s)	298
BseRI	GAGGAG	2 cut(s)	11, 265
BseSI	GKGCMC	1 cut(s)	416
BseXI	GCAGC	1 cut(s)	334
BseYI	CCCAGC	1 cut(s)	424
BsgI	GTGCAG	1 cut(s)	341
BshFI	GGCC	3 cut(s)	155, 174, 281
BslI	CCNNNNNNNGG	1 cut(s)	304
BsmAI	GTCTC	1 cut(s)	447
BsnI	GGCC	3 cut(s)	155, 174, 281
Bsp1286I	GDGCHC	1 cut(s)	416
Bsp1720I	GCTNAGC	1 cut(s)	226
Bsp19I	CCATGG	1 cut(s)	61
BspACI	CCGC	3 cut(s)	127, 374, 380
BspANI	GGCC	3 cut(s)	155, 174, 281
BspMI	ACCTGC	1 cut(s)	439
BspQI	GCTCTTC	1 cut(s)	326
BsrDI	GCAATG	1 cut(s)	363
BsrI	ACTGG	1 cut(s)	298
BssECI	CCNNGG	3 cut(s)	61, 169, 210
BssSI	CACGAG	1 cut(s)	415
BssT1I	CCWWGG	1 cut(s)	61
Bst2BI	CACGAG	1 cut(s)	415
Bst2UI	CCWGG	3 cut(s)	170, 278, 305
Bst4CI	ACNGT	1 cut(s)	205
Bst6I	CTCTTC	2 cut(s)	326, 402
BstC8I	GCNNGC	1 cut(s)	422
BstDEI	CTNAG	2 cut(s)	226, 444
BstDSI	CCRYGG	2 cut(s)	61, 210
BstMAI	GTCTC	1 cut(s)	447
BstMWI	GCNNNNNNNGC	1 cut(s)	379
BstNI	CCWGG	3 cut(s)	170, 278, 305
BstSCI	CCNGG	3 cut(s)	168, 276, 303
BstSLI	GKGCMC	1 cut(s)	416
BstV1I	GCAGC	1 cut(s)	334
BsuRI	GGCC	3 cut(s)	155, 174, 281
BtgI	CCRYGG	2 cut(s)	61, 210
BtrI	CACGTC	1 cut(s)	316
BveI	ACCTGC	1 cut(s)	439
Cac8I	GCNNGC	1 cut(s)	422
Cfr13I	GGNCC	3 cut(s)	154, 172, 280
Csp6I	GTAC	2 cut(s)	163, 274
CviAII	CATG	2 cut(s)	62, 284
CviJI	RGCY	9 cut(s)	14, 43, 66, 155, 174, 230, 281, 325, 424
CviKI_1	RGCY	9 cut(s)	14, 43, 66, 155, 174, 230, 281, 325, 424
CviQI	GTAC	2 cut(s)	163, 274
DdeI	CTNAG	2 cut(s)	226, 444
DrdI	GACNNNNNNGTC	1 cut(s)	203
DseDI	GACNNNNNNGTC	1 cut(s)	203
Eam1104I	CTCTTC	2 cut(s)	326, 402
EarI	CTCTTC	2 cut(s)	326, 402
EciI	GGCGGA	2 cut(s)	116, 369
Eco130I	CCWWGG	1 cut(s)	61
EcoO109I	RGGNCCY	1 cut(s)	154
EcoRII	CCWGG	3 cut(s)	168, 276, 303
EcoT14I	CCWWGG	1 cut(s)	61
ErhI	CCWWGG	1 cut(s)	61
FaeI	CATG	2 cut(s)	65, 287
FaiI	YATR	2 cut(s)	63, 285
FatI	CATG	2 cut(s)	61, 283
Fnu4HI	GCNGC	2 cut(s)	323, 374
Fsp4HI	GCNGC	2 cut(s)	323, 374
GluI	GCNGC	2 cut(s)	323, 374
GsaI	CCCAGC	1 cut(s)	428
GsuI	CTGGAG	1 cut(s)	152
HaeIII	GGCC	3 cut(s)	155, 174, 281
Hin1II	CATG	2 cut(s)	65, 287
HinfI	GANTC	3 cut(s)	177, 430, 440
HphI	GGTGA	2 cut(s)	268, 323
Hpy99I	CGWCG	1 cut(s)	209
HpyAV	CCTTC	4 cut(s)	37, 91, 121, 394
HpyCH4III	ACNGT	1 cut(s)	205
HpyCH4IV	ACGT	1 cut(s)	315
HpyCH4V	TGCA	1 cut(s)	322
HpyF10VI	GCNNNNNNNGC	1 cut(s)	379
HpyF3I	CTNAG	2 cut(s)	226, 444
HpySE526I	ACGT	1 cut(s)	315
Hsp92II	CATG	2 cut(s)	65, 287
LguI	GCTCTTC	1 cut(s)	326
LmnI	GCTCC	1 cut(s)	191
LpnPI	CCDG	9 cut(s)	155, 182, 263, 290, 290, 311, 317, 410, 434
Lsp1109I	GCAGC	1 cut(s)	334
MaeII	ACGT	1 cut(s)	315
MaeIII	GTNAC	3 cut(s)	3, 217, 311
MboII	GAAGA	7 cut(s)	274, 277, 280, 343, 406, 409, 419
MhlI	GDGCHC	1 cut(s)	416
MluCI	AATT	1 cut(s)	53
MlyI	GAGTC	2 cut(s)	186, 449
MmeI	TCCRAC	1 cut(s)	166
MslI	CAYNNNNRTG	1 cut(s)	368
MspR9I	CCNGG	3 cut(s)	170, 278, 305
MvaI	CCWGG	3 cut(s)	170, 278, 305
MwoI	GCNNNNNNNGC	1 cut(s)	379
NcoI	CCATGG	1 cut(s)	61
NlaIII	CATG	2 cut(s)	65, 287
NmeAIII	GCCGAG	1 cut(s)	200
NmuCI	GTSAC	3 cut(s)	3, 217, 311
PciSI	GCTCTTC	1 cut(s)	326
PcsI	WCGNNNNNNNCGW	1 cut(s)	201
PfeI	GAWTC	1 cut(s)	430
PkrI	GCNGC	2 cut(s)	324, 375
PleI	GAGTC	2 cut(s)	185, 448
PpsI	GAGTC	2 cut(s)	185, 448
Psp6I	CCWGG	3 cut(s)	168, 276, 303
PspFI	CCCAGC	1 cut(s)	424
PspGI	CCWGG	3 cut(s)	168, 276, 303
PspPI	GGNCC	3 cut(s)	154, 172, 280
RsaI	GTAC	2 cut(s)	164, 275
RsaNI	GTAC	2 cut(s)	163, 274
RseI	CAYNNNNRTG	1 cut(s)	368
SapI	GCTCTTC	1 cut(s)	326
SatI	GCNGC	2 cut(s)	323, 374
Sau96I	GGNCC	3 cut(s)	154, 172, 280
SchI	GAGTC	2 cut(s)	186, 449
ScrFI	CCNGG	3 cut(s)	170, 278, 305
SduI	GDGCHC	1 cut(s)	416
SetI	ASST	9 cut(s)	16, 45, 168, 219, 309, 318, 327, 426, 453
SmiMI	CAYNNNNRTG	1 cut(s)	368
SmlI	CTYRAG	2 cut(s)	158, 326
SmoI	CTYRAG	2 cut(s)	158, 326
Sse9I	AATT	1 cut(s)	53
SsiI	CCGC	3 cut(s)	127, 374, 380
StyD4I	CCNGG	3 cut(s)	168, 276, 303
StyI	CCWWGG	1 cut(s)	61
TaaI	ACNGT	1 cut(s)	205
TaiI	ACGT	1 cut(s)	318
TasI	AATT	1 cut(s)	53
TauI	GCSGC	1 cut(s)	376
TfiI	GAWTC	1 cut(s)	430
TseFI	GTSAC	3 cut(s)	3, 217, 311
TseI	GCWGC	1 cut(s)	322
Tsp45I	GTSAC	3 cut(s)	3, 217, 311
TspDTI	ATGAA	1 cut(s)	352
XcmI	CCANNNNNNNNNTGG	1 cut(s)	59

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.