Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0016696

Physical Location & Seq

Genomic Coordinates Reverse (-)

11151722 .. 11152464

Gene Structure 743 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g12560.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGTTTTTTCATAATTTACTTGCATTTTTACTAAGAATTGGTTCCCAAAATATTTTCACAAAAAACGCTTTCAGTTATTTTAAAAGTACATCCAAACGAGTTCTATATCCAACTCCAAACACCATTTTCGACACCTCATCCAATCTCCCTTATCCTCCACACGTTTATACCCAAAATTCCAAACTCAAACGTCAAGCCAATGCAAAGATGTCACTCACTGCTTCACTCCTCCACCCCTCTCCCAAGCTCTCCACCCCCTTCCTCCATGGCTCCTCCACCCCCTTCTGCCCCCTCTCCAAACCCACTTCCTCCCTCGCCTTCCCGACCCCACAACGCCTTACTTTCCTCCCACCCATCAGAGCCTTGAAGTACCTCCAAGGCCGCGTCGTCTGCGCCACCAGCGACAAGACCGTCGCCGTCGAAGTCACCCGCCTCGCTCCGCACCCCAAGTACAAGAGGCGGGTCAGGAAGAAGAAGAAGTACCAGGCCCACGACCCGGATAACGAGTTCCAGGTTGGGGACGTTGTCCAGCTTGAAAAATGCAGACCCATTAGCAAGACCAAGACTTTTCTTGCTGTGCCGGTCCCTGCCAAGAATTCAAAAGGCAAGTCCGGTGAAGGCGACGTGCCGAATGAGCTCGGGATTCCTTTGGAGTCTCTGCAGGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000312 GO:0000313 GO:0000314 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009536 GO:0009547 GO:0009570 GO:0009579 GO:0009657 GO:0009941 GO:0009987 GO:0010467 GO:0015935 GO:0016043 GO:0019538 GO:0022626 GO:0022627 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032544 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0071840 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S17

Protein Analysis

223

Amino Acids

24.81

Weight (kDa)

10.15

Isoelectric Point (pI)

42.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016696)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79850
fragaria_vesca	FvH4_6g31770 FvH4_6g31770
malus_domestica	MD09G1209400.v1.1 MD17G1191100.v1.1
prunus_persica	Prupe.3G067300_v2.0.a1
pyrus_communis	pycom09g12560 pycom17g19820
rosa_chinensis	RchiOBHm_Chr2g0138941
rosa_laevigata	RLG00000019770
rosa_multiflora	Rmu_sc0001376.1_g000003
rosa_roxburghii	Rroxscaffold_2G00105850
rosa_rugosa	Rorug02G0353400
rosa_wichuraiana	Rw2G032820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	410
Acc36I	ACCTGC	1 cut(s)	652
AccII	CGCG	1 cut(s)	384
AciI	CCGC	4 cut(s)	382, 430, 440, 460
AcsI	RAATTY	2 cut(s)	175, 595
AfaI	GTAC	4 cut(s)	88, 371, 452, 482
AfiI	CCNNNNNNNGG	2 cut(s)	496, 517
AflIII	ACRYGT	1 cut(s)	160
AgsI	TTSAA	3 cut(s)	367, 536, 600
AjiI	CACGTC	1 cut(s)	625
AjnI	CCWGG	2 cut(s)	483, 510
AloI	GAACNNNNNNTCC	2 cut(s)	491, 523
AluBI	AGCT	3 cut(s)	247, 532, 637
AluI	AGCT	3 cut(s)	247, 532, 637
Alw21I	GWGCWC	1 cut(s)	639
Alw26I	GTCTC	1 cut(s)	660
Ama87I	CYCGRG	1 cut(s)	638
AoxI	GGCC	2 cut(s)	379, 486
ApoI	RAATTY	2 cut(s)	175, 595
ArsI	GACNNNNNNTTYG	2 cut(s)	593, 625
Asp700I	GAANNNNTTC	1 cut(s)	40
AspLEI	GCGC	1 cut(s)	395
AspS9I	GGNCC	2 cut(s)	487, 583
AsuC2I	CCSGG	1 cut(s)	497
AsuHPI	GGTGA	2 cut(s)	418, 626
AvaI	CYCGRG	1 cut(s)	638
AvaII	GGWCC	1 cut(s)	583
BanII	GRGCYC	1 cut(s)	639
BarI	GAAGNNNNNNTAC	2 cut(s)	464, 496
Bbv12I	GWGCWC	1 cut(s)	639
BccI	CCATC	1 cut(s)	362
BceAI	ACGGC	1 cut(s)	401
BciT130I	CCWGG	2 cut(s)	485, 512
BcnI	CCSGG	1 cut(s)	497
BcoDI	GTCTC	1 cut(s)	660
BfmI	CTRYAG	1 cut(s)	659
BfuAI	ACCTGC	1 cut(s)	652
BisI	GCNGC	1 cut(s)	382
BlsI	GCNGC	1 cut(s)	383
Bme1390I	CCNGG	3 cut(s)	485, 497, 512
Bme18I	GGWCC	1 cut(s)	583
BmeT110I	CYCGRG	1 cut(s)	638
BmgBI	CACGTC	1 cut(s)	625
BmgT120I	GGNCC	2 cut(s)	487, 583
BmiI	GGNNCC	3 cut(s)	43, 271, 585
BmrFI	CCNGG	3 cut(s)	485, 497, 512
BpuMI	CCSGG	1 cut(s)	497
BsaJI	CCNNGG	2 cut(s)	265, 376
BsaWI	WCCGGW	1 cut(s)	611
Bsc4I	CCNNNNNNNGG	2 cut(s)	496, 517
Bse118I	RCCGGY	1 cut(s)	580
BseBI	CCWGG	2 cut(s)	485, 512
BseDI	CCNNGG	2 cut(s)	265, 376
BseGI	GGATG	2 cut(s)	89, 137
BseLI	CCNNNNNNNGG	2 cut(s)	496, 517
BseRI	GAGGAG	2 cut(s)	218, 262
Bsh1236I	CGCG	1 cut(s)	384
BshFI	GGCC	2 cut(s)	381, 488
BsiHKAI	GWGCWC	1 cut(s)	639
BsiHKCI	CYCGRG	1 cut(s)	638
BsiSI	CCGG	3 cut(s)	497, 581, 612
BslFI	GGGAC	2 cut(s)	533, 569
BslI	CCNNNNNNNGG	2 cut(s)	496, 517
BsmAI	GTCTC	1 cut(s)	660
BsmFI	GGGAC	2 cut(s)	533, 569
BsnI	GGCC	2 cut(s)	381, 488
BsoBI	CYCGRG	1 cut(s)	638
Bsp1286I	GDGCHC	1 cut(s)	639
Bsp19I	CCATGG	1 cut(s)	265
BspACI	CCGC	4 cut(s)	382, 430, 440, 460
BspANI	GGCC	2 cut(s)	381, 488
BspFNI	CGCG	1 cut(s)	384
BspLI	GGNNCC	3 cut(s)	43, 271, 585
BspMAI	CTGCAG	1 cut(s)	663
BspMI	ACCTGC	1 cut(s)	652
BsrFI	RCCGGY	1 cut(s)	580
BssAI	RCCGGY	1 cut(s)	580
BssECI	CCNNGG	2 cut(s)	265, 376
BssT1I	CCWWGG	2 cut(s)	265, 376
Bst2UI	CCWGG	2 cut(s)	485, 512
Bst4CI	ACNGT	1 cut(s)	412
BstDEI	CTNAG	1 cut(s)	32
BstDSI	CCRYGG	1 cut(s)	265
BstF5I	GGATG	2 cut(s)	89, 137
BstFNI	CGCG	1 cut(s)	384
BstHHI	GCGC	1 cut(s)	395
BstMAI	GTCTC	1 cut(s)	660
BstMWI	GCNNNNNNNGC	3 cut(s)	390, 399, 634
BstNI	CCWGG	2 cut(s)	485, 512
BstSCI	CCNGG	3 cut(s)	483, 495, 510
BstSFI	CTRYAG	1 cut(s)	659
BstUI	CGCG	1 cut(s)	384
BsuRI	GGCC	2 cut(s)	381, 488
BtgI	CCRYGG	1 cut(s)	265
BtrI	CACGTC	1 cut(s)	625
BtsCI	GGATG	2 cut(s)	89, 137
BtsI	GCAGTG	1 cut(s)	216
BtsIMutI	CAGTG	1 cut(s)	216
BveI	ACCTGC	1 cut(s)	652
CfoI	GCGC	1 cut(s)	395
Cfr10I	RCCGGY	1 cut(s)	580
Cfr13I	GGNCC	2 cut(s)	487, 583
CseI	GACGC	1 cut(s)	373
Csp6I	GTAC	4 cut(s)	87, 370, 451, 481
CviAII	CATG	1 cut(s)	266
CviJI	RGCY	8 cut(s)	197, 247, 270, 362, 381, 488, 532, 637
CviKI_1	RGCY	8 cut(s)	197, 247, 270, 362, 381, 488, 532, 637
CviQI	GTAC	4 cut(s)	87, 370, 451, 481
DdeI	CTNAG	1 cut(s)	32
DraI	TTTAAA	1 cut(s)	82
DrdI	GACNNNNNNGTC	1 cut(s)	410
DseDI	GACNNNNNNGTC	1 cut(s)	410
Ecl136II	GAGCTC	1 cut(s)	637
Eco130I	CCWWGG	2 cut(s)	265, 376
Eco24I	GRGCYC	1 cut(s)	639
Eco47I	GGWCC	1 cut(s)	583
Eco53kI	GAGCTC	1 cut(s)	637
Eco88I	CYCGRG	1 cut(s)	638
EcoICRI	GAGCTC	1 cut(s)	637
EcoRI	GAATTC	1 cut(s)	595
EcoRII	CCWGG	2 cut(s)	483, 510
EcoT14I	CCWWGG	2 cut(s)	265, 376
EcoT38I	GRGCYC	1 cut(s)	639
ErhI	CCWWGG	2 cut(s)	265, 376
FaeI	CATG	1 cut(s)	269
FaiI	YATR	4 cut(s)	12, 106, 168, 267
FaqI	GGGAC	2 cut(s)	533, 569
FatI	CATG	1 cut(s)	265
FauI	CCCGC	2 cut(s)	437, 453
Fnu4HI	GCNGC	1 cut(s)	382
FokI	GGATG	2 cut(s)	76, 124
FriOI	GRGCYC	1 cut(s)	639
Fsp4HI	GCNGC	1 cut(s)	382
GlaI	GCGC	1 cut(s)	394
GluI	GCNGC	1 cut(s)	382
HaeIII	GGCC	2 cut(s)	381, 488
HapII	CCGG	3 cut(s)	497, 581, 612
HgaI	GACGC	1 cut(s)	373
HhaI	GCGC	1 cut(s)	395
Hin1II	CATG	1 cut(s)	269
Hin6I	GCGC	1 cut(s)	393
HinP1I	GCGC	1 cut(s)	393
HinfI	GANTC	2 cut(s)	643, 653
HpaII	CCGG	3 cut(s)	497, 581, 612
HphI	GGTGA	2 cut(s)	418, 626
Hpy188I	TCNGA	1 cut(s)	359
Hpy188III	TCNNGA	3 cut(s)	322, 466, 640
Hpy99I	CGWCG	4 cut(s)	389, 416, 422, 626
HpyAV	CCTTC	4 cut(s)	268, 292, 328, 611
HpyCH4III	ACNGT	1 cut(s)	412
HpyCH4IV	ACGT	4 cut(s)	162, 190, 522, 624
HpyCH4V	TGCA	4 cut(s)	23, 203, 543, 661
HpyF10VI	GCNNNNNNNGC	3 cut(s)	390, 399, 634
HpyF3I	CTNAG	1 cut(s)	32
HpySE526I	ACGT	4 cut(s)	162, 190, 522, 624
Hsp92II	CATG	1 cut(s)	269
HspAI	GCGC	1 cut(s)	393
LmnI	GCTCC	2 cut(s)	275, 442
MaeII	ACGT	4 cut(s)	162, 190, 522, 624
MaeIII	GTNAC	2 cut(s)	210, 424
MboII	GAAGA	3 cut(s)	481, 484, 487
MhlI	GDGCHC	1 cut(s)	639
MluCI	AATT	4 cut(s)	13, 36, 175, 595
MlyI	GAGTC	1 cut(s)	662
MmeI	TCCRAC	1 cut(s)	134
MroXI	GAANNNNTTC	1 cut(s)	40
MseI	TTAA	1 cut(s)	81
MspI	CCGG	3 cut(s)	497, 581, 612
MspR9I	CCNGG	3 cut(s)	485, 497, 512
MvaI	CCWGG	2 cut(s)	485, 512
MvnI	CGCG	1 cut(s)	384
MwoI	GCNNNNNNNGC	3 cut(s)	390, 399, 634
NciI	CCSGG	1 cut(s)	497
NcoI	CCATGG	1 cut(s)	265
NlaIII	CATG	1 cut(s)	269
NlaIV	GGNNCC	3 cut(s)	43, 271, 585
NmuCI	GTSAC	2 cut(s)	210, 424
PdmI	GAANNNNTTC	1 cut(s)	40
PfeI	GAWTC	1 cut(s)	643
PflFI	GACNNNGTC	1 cut(s)	524
PkrI	GCNGC	1 cut(s)	383
PleI	GAGTC	1 cut(s)	661
PpsI	GAGTC	1 cut(s)	661
Psp124BI	GAGCTC	1 cut(s)	639
Psp6I	CCWGG	2 cut(s)	483, 510
PspGI	CCWGG	2 cut(s)	483, 510
PspN4I	GGNNCC	3 cut(s)	43, 271, 585
PspPI	GGNCC	2 cut(s)	487, 583
PstI	CTGCAG	1 cut(s)	663
PsyI	GACNNNGTC	1 cut(s)	524
RsaI	GTAC	4 cut(s)	88, 371, 452, 482
RsaNI	GTAC	4 cut(s)	87, 370, 451, 481
SacI	GAGCTC	1 cut(s)	639
SaqAI	TTAA	1 cut(s)	81
SatI	GCNGC	1 cut(s)	382
Sau96I	GGNCC	2 cut(s)	487, 583
SchI	GAGTC	1 cut(s)	662
ScrFI	CCNGG	3 cut(s)	485, 497, 512
SduI	GDGCHC	1 cut(s)	639
SfcI	CTRYAG	1 cut(s)	659
SinI	GGWCC	1 cut(s)	583
Sse9I	AATT	4 cut(s)	13, 36, 175, 595
SsiI	CCGC	4 cut(s)	382, 430, 440, 460
SspI	AATATT	1 cut(s)	52
SstI	GAGCTC	1 cut(s)	639
StyD4I	CCNGG	3 cut(s)	483, 495, 510
StyI	CCWWGG	2 cut(s)	265, 376
TaaI	ACNGT	1 cut(s)	412
TaiI	ACGT	4 cut(s)	165, 193, 525, 627
TaqI	TCGA	2 cut(s)	129, 420
TasI	AATT	4 cut(s)	13, 36, 175, 595
TatI	WGTACW	2 cut(s)	86, 450
TauI	GCSGC	1 cut(s)	384
TfiI	GAWTC	1 cut(s)	643
Tru1I	TTAA	1 cut(s)	81
Tru9I	TTAA	1 cut(s)	81
TscAI	CASTG	1 cut(s)	223
TseFI	GTSAC	2 cut(s)	210, 424
Tsp45I	GTSAC	2 cut(s)	210, 424
TspRI	CASTG	1 cut(s)	223
Tth111I	GACNNNGTC	1 cut(s)	524
VpaK11BI	GGWCC	1 cut(s)	583
XapI	RAATTY	2 cut(s)	175, 595
XmnI	GAANNNNTTC	1 cut(s)	40

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.