Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001376.1

Orthogroup ID

OG0016696

Physical Location & Seq

Genomic Coordinates Forward (+)

8986 .. 9447

Gene Structure 462 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001376.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

atgtcactcacagcttcactcctccccttctctcccaccaagctctccacccagttcatccatggctctactcctctcactctcctctccaaacccgcttcctctctcgccttcccaaccccactacgccacaccttcctccaacccatcaaggccctcaagtaccttcaaggccgagtcgtctgctccaccaacgacaagaccgtcgccgtggaggtcactcgcttagcccctcacccaaagtacaagaggagggtgaggaagaagaagaagtaccaggcccatgacccggataaccagttccaggtcggcgacgtggtccagcttgagaagagcagacccatcagcaagaccaagactttcattgccgtgccgcttccgccgaagaatgcgaagaagaaatccggggaggaagacgcgcccaaggagcttgggattcctttggagtctcagcaggtttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000312 GO:0000313 GO:0000314 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009536 GO:0009547 GO:0009570 GO:0009579 GO:0009657 GO:0009941 GO:0009987 GO:0010467 GO:0015935 GO:0016043 GO:0019538 GO:0022626 GO:0022627 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032544 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0071840 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S17

Protein Analysis

153

Amino Acids

17.02

Weight (kDa)

10.16

Isoelectric Point (pI)

42.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016696)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79850
fragaria_vesca	FvH4_6g31770 FvH4_6g31770
malus_domestica	MD09G1209400.v1.1 MD17G1191100.v1.1
prunus_persica	Prupe.3G067300_v2.0.a1
pyrus_communis	pycom09g12560 pycom17g19820
rosa_chinensis	RchiOBHm_Chr2g0138941
rosa_laevigata	RLG00000019770
rosa_multiflora	Rmu_sc0001376.1_g000003
rosa_roxburghii	Rroxscaffold_2G00105850
rosa_rugosa	Rorug02G0353400
rosa_wichuraiana	Rw2G032820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	203
Acc36I	ACCTGC	1 cut(s)	445
AccII	CGCG	1 cut(s)	419
AciI	CCGC	3 cut(s)	96, 374, 380
AfaI	GTAC	3 cut(s)	164, 245, 275
AfiI	CCNNNNNNNGG	2 cut(s)	289, 304
AgsI	TTSAA	1 cut(s)	170
AjiI	CACGTC	1 cut(s)	316
AjnI	CCWGG	2 cut(s)	276, 303
AloI	GAACNNNNNNTCC	2 cut(s)	284, 316
AluBI	AGCT	4 cut(s)	14, 43, 325, 430
AluI	AGCT	4 cut(s)	14, 43, 325, 430
Alw26I	GTCTC	1 cut(s)	453
AoxI	GGCC	3 cut(s)	153, 172, 279
AspLEI	GCGC	1 cut(s)	421
AspS9I	GGNCC	3 cut(s)	154, 280, 319
AsuC2I	CCSGG	2 cut(s)	290, 406
AsuHPI	GGTGA	2 cut(s)	227, 268
AvaII	GGWCC	1 cut(s)	319
BarI	GAAGNNNNNNTAC	2 cut(s)	257, 289
BbsI	GAAGAC	1 cut(s)	420
BccI	CCATC	2 cut(s)	155, 350
BceAI	ACGGC	2 cut(s)	194, 353
BcgI	CGANNNNNNTGC	2 cut(s)	165, 199
BciT130I	CCWGG	2 cut(s)	278, 305
BcnI	CCSGG	2 cut(s)	290, 406
BcoDI	GTCTC	1 cut(s)	453
BfuAI	ACCTGC	1 cut(s)	445
BisI	GCNGC	1 cut(s)	374
BlpI	GCTNAGC	1 cut(s)	226
BlsI	GCNGC	1 cut(s)	375
Bme1390I	CCNGG	4 cut(s)	278, 290, 305, 406
Bme18I	GGWCC	1 cut(s)	319
BmgBI	CACGTC	1 cut(s)	316
BmgT120I	GGNCC	3 cut(s)	154, 280, 319
BmrFI	CCNGG	4 cut(s)	278, 290, 305, 406
BmrI	ACTGGG	1 cut(s)	46
BmuI	ACTGGG	1 cut(s)	46
BpiI	GAAGAC	1 cut(s)	420
Bpu1102I	GCTNAGC	1 cut(s)	226
BpuEI	CTTGAG	2 cut(s)	143, 347
BpuMI	CCSGG	2 cut(s)	290, 406
BsaJI	CCNNGG	4 cut(s)	61, 210, 405, 423
Bsc4I	CCNNNNNNNGG	2 cut(s)	289, 304
Bse1I	ACTGG	2 cut(s)	52, 298
Bse3DI	GCAATG	1 cut(s)	363
BseBI	CCWGG	2 cut(s)	278, 305
BseDI	CCNNGG	4 cut(s)	61, 210, 405, 423
BseGI	GGATG	1 cut(s)	57
BseLI	CCNNNNNNNGG	2 cut(s)	289, 304
BseMI	GCAATG	1 cut(s)	363
BseNI	ACTGG	2 cut(s)	52, 298
BseRI	GAGGAG	4 cut(s)	11, 63, 74, 265
Bsh1236I	CGCG	1 cut(s)	419
BshFI	GGCC	3 cut(s)	155, 174, 281
BsiSI	CCGG	2 cut(s)	290, 405
BslI	CCNNNNNNNGG	2 cut(s)	289, 304
BsmAI	GTCTC	1 cut(s)	453
BsmI	GAATGC	1 cut(s)	394
BsnI	GGCC	3 cut(s)	155, 174, 281
Bsp1720I	GCTNAGC	1 cut(s)	226
Bsp19I	CCATGG	1 cut(s)	61
BspACI	CCGC	3 cut(s)	96, 374, 380
BspANI	GGCC	3 cut(s)	155, 174, 281
BspFNI	CGCG	1 cut(s)	419
BspMI	ACCTGC	1 cut(s)	445
BspQI	GCTCTTC	1 cut(s)	326
BsrDI	GCAATG	1 cut(s)	363
BsrI	ACTGG	2 cut(s)	52, 298
BssECI	CCNNGG	4 cut(s)	61, 210, 405, 423
BssT1I	CCWWGG	2 cut(s)	61, 423
Bst2UI	CCWGG	2 cut(s)	278, 305
Bst4CI	ACNGT	1 cut(s)	205
Bst6I	CTCTTC	1 cut(s)	326
BstDEI	CTNAG	2 cut(s)	226, 450
BstDSI	CCRYGG	2 cut(s)	61, 210
BstF5I	GGATG	1 cut(s)	57
BstFNI	CGCG	1 cut(s)	419
BstHHI	GCGC	1 cut(s)	421
BstMAI	GTCTC	1 cut(s)	453
BstMWI	GCNNNNNNNGC	2 cut(s)	379, 427
BstNI	CCWGG	2 cut(s)	278, 305
BstSCI	CCNGG	4 cut(s)	276, 288, 303, 404
BstUI	CGCG	1 cut(s)	419
BstV2I	GAAGAC	1 cut(s)	420
BsuRI	GGCC	3 cut(s)	155, 174, 281
BtgI	CCRYGG	2 cut(s)	61, 210
BtrI	CACGTC	1 cut(s)	316
BtsCI	GGATG	1 cut(s)	57
BveI	ACCTGC	1 cut(s)	445
CfoI	GCGC	1 cut(s)	421
Cfr13I	GGNCC	3 cut(s)	154, 280, 319
CseI	GACGC	1 cut(s)	425
Csp6I	GTAC	3 cut(s)	163, 244, 274
CviAII	CATG	2 cut(s)	62, 284
CviJI	RGCY	9 cut(s)	14, 43, 66, 155, 174, 230, 281, 325, 430
CviKI_1	RGCY	9 cut(s)	14, 43, 66, 155, 174, 230, 281, 325, 430
CviQI	GTAC	3 cut(s)	163, 244, 274
DdeI	CTNAG	2 cut(s)	226, 450
DrdI	GACNNNNNNGTC	1 cut(s)	203
DseDI	GACNNNNNNGTC	1 cut(s)	203
Eam1104I	CTCTTC	1 cut(s)	326
EarI	CTCTTC	1 cut(s)	326
EciI	GGCGGA	1 cut(s)	369
Eco130I	CCWWGG	2 cut(s)	61, 423
Eco47I	GGWCC	1 cut(s)	319
EcoO109I	RGGNCCY	1 cut(s)	154
EcoRII	CCWGG	2 cut(s)	276, 303
EcoT14I	CCWWGG	2 cut(s)	61, 423
ErhI	CCWWGG	2 cut(s)	61, 423
FaeI	CATG	2 cut(s)	65, 287
FaiI	YATR	2 cut(s)	63, 285
FatI	CATG	2 cut(s)	61, 283
FauI	CCCGC	1 cut(s)	103
Fnu4HI	GCNGC	1 cut(s)	374
FokI	GGATG	1 cut(s)	44
Fsp4HI	GCNGC	1 cut(s)	374
GlaI	GCGC	1 cut(s)	420
GluI	GCNGC	1 cut(s)	374
HaeIII	GGCC	3 cut(s)	155, 174, 281
HapII	CCGG	2 cut(s)	290, 405
HgaI	GACGC	1 cut(s)	425
HhaI	GCGC	1 cut(s)	421
Hin1II	CATG	2 cut(s)	65, 287
Hin6I	GCGC	1 cut(s)	419
HinP1I	GCGC	1 cut(s)	419
HinfI	GANTC	3 cut(s)	177, 436, 446
HpaII	CCGG	2 cut(s)	290, 405
HphI	GGTGA	2 cut(s)	227, 268
Hpy99I	CGWCG	2 cut(s)	209, 317
HpyAV	CCTTC	4 cut(s)	37, 121, 145, 176
HpyCH4III	ACNGT	1 cut(s)	205
HpyCH4IV	ACGT	1 cut(s)	315
HpyF10VI	GCNNNNNNNGC	2 cut(s)	379, 427
HpyF3I	CTNAG	2 cut(s)	226, 450
HpySE526I	ACGT	1 cut(s)	315
Hsp92II	CATG	2 cut(s)	65, 287
HspAI	GCGC	1 cut(s)	419
LguI	GCTCTTC	1 cut(s)	326
LmnI	GCTCC	2 cut(s)	191, 427
MaeII	ACGT	1 cut(s)	315
MaeIII	GTNAC	2 cut(s)	3, 217
MboII	GAAGA	8 cut(s)	274, 277, 280, 343, 397, 406, 409, 425
MlyI	GAGTC	2 cut(s)	186, 455
MmeI	TCCRAC	1 cut(s)	166
MslI	CAYNNNNRTG	1 cut(s)	368
MspI	CCGG	2 cut(s)	290, 405
MspR9I	CCNGG	4 cut(s)	278, 290, 305, 406
Mva1269I	GAATGC	1 cut(s)	394
MvaI	CCWGG	2 cut(s)	278, 305
MvnI	CGCG	1 cut(s)	419
MwoI	GCNNNNNNNGC	2 cut(s)	379, 427
NciI	CCSGG	2 cut(s)	290, 406
NcoI	CCATGG	1 cut(s)	61
NlaIII	CATG	2 cut(s)	65, 287
NmeAIII	GCCGAG	1 cut(s)	200
NmuCI	GTSAC	2 cut(s)	3, 217
PciSI	GCTCTTC	1 cut(s)	326
PcsI	WCGNNNNNNNCGW	1 cut(s)	201
PctI	GAATGC	1 cut(s)	394
PfeI	GAWTC	1 cut(s)	436
PflFI	GACNNNGTC	1 cut(s)	317
PkrI	GCNGC	1 cut(s)	375
PleI	GAGTC	2 cut(s)	185, 454
PpsI	GAGTC	2 cut(s)	185, 454
Psp6I	CCWGG	2 cut(s)	276, 303
PspGI	CCWGG	2 cut(s)	276, 303
PspPI	GGNCC	3 cut(s)	154, 280, 319
PsyI	GACNNNGTC	1 cut(s)	317
RsaI	GTAC	3 cut(s)	164, 245, 275
RsaNI	GTAC	3 cut(s)	163, 244, 274
RseI	CAYNNNNRTG	1 cut(s)	368
SapI	GCTCTTC	1 cut(s)	326
SatI	GCNGC	1 cut(s)	374
Sau96I	GGNCC	3 cut(s)	154, 280, 319
SchI	GAGTC	2 cut(s)	186, 455
ScrFI	CCNGG	4 cut(s)	278, 290, 305, 406
SinI	GGWCC	1 cut(s)	319
SmiMI	CAYNNNNRTG	1 cut(s)	368
SmlI	CTYRAG	2 cut(s)	158, 326
SmoI	CTYRAG	2 cut(s)	158, 326
SsiI	CCGC	3 cut(s)	96, 374, 380
StyD4I	CCNGG	4 cut(s)	276, 288, 303, 404
StyI	CCWWGG	2 cut(s)	61, 423
TaaI	ACNGT	1 cut(s)	205
TaiI	ACGT	1 cut(s)	318
TatI	WGTACW	1 cut(s)	243
TauI	GCSGC	1 cut(s)	376
TfiI	GAWTC	1 cut(s)	436
TseFI	GTSAC	2 cut(s)	3, 217
Tsp45I	GTSAC	2 cut(s)	3, 217
TspDTI	ATGAA	2 cut(s)	46, 352
Tth111I	GACNNNGTC	1 cut(s)	317
VpaK11BI	GGWCC	1 cut(s)	319
XcmI	CCANNNNNNNNNTGG	1 cut(s)	59

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.