Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0016696

Physical Location & Seq

Genomic Coordinates Reverse (-)

17849965 .. 17850426

Gene Structure 462 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g19820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGTCACTCACGGCTTCACTCCTCCACCCCTCTCCCAAGCTCTCCACTCCTTTCCTCCATGGCTCCTCCACCTCCTTCTCCCCCCTCTCCAAACCCACTTCCTCCCTCGCCTTCCCCACCCCACAACGCCTCACTTTCCTCCCGCCCATCAGAGCCCTGAAGTACCTCCAAGGCCGCGTCGTCTGCGCCACCAGCGACAAGACCGTCGCCGTCGAAGTCACCCGCCTCGCCCCGCACCCCAAGTACAAGAGGCGGGTCAGGAAGCAGAAGAAGTACCAGGCCCACGACCCAGATAACCAGTTCCAGGTTGGGGACATTGTCCAGCTTGAAAAATGCAGACCCATTAGCAAGACCAAGACTTTTCTTGCTGTGCCGGTTCCTGCCAAGAAATCGAAGAGCAAGTCCGGTGAAGGCGACGCGCCGAATGAGCTCGGGATTCCCTTGGAGTCTCTGCAGGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000312 GO:0000313 GO:0000314 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009536 GO:0009547 GO:0009570 GO:0009579 GO:0009657 GO:0009941 GO:0009987 GO:0010467 GO:0015935 GO:0016043 GO:0019538 GO:0022626 GO:0022627 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032544 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0071840 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S17

Protein Analysis

154

Amino Acids

16.81

Weight (kDa)

10.14

Isoelectric Point (pI)

42.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S17	PF00366	58 - 121	6.3e-27	Ribosomal protein S17

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0016696)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79850
fragaria_vesca	FvH4_6g31770 FvH4_6g31770
malus_domestica	MD09G1209400.v1.1 MD17G1191100.v1.1
prunus_persica	Prupe.3G067300_v2.0.a1
pyrus_communis	pycom09g12560 pycom17g19820
rosa_chinensis	RchiOBHm_Chr2g0138941
rosa_laevigata	RLG00000019770
rosa_multiflora	Rmu_sc0001376.1_g000003
rosa_roxburghii	Rroxscaffold_2G00105850
rosa_rugosa	Rorug02G0353400
rosa_wichuraiana	Rw2G032820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	203
Acc36I	ACCTGC	1 cut(s)	445
AccII	CGCG	2 cut(s)	177, 419
AciI	CCGC	5 cut(s)	143, 175, 223, 233, 253
AcuI	CTGAAG	1 cut(s)	179
AfaI	GTAC	3 cut(s)	164, 245, 275
AfiI	CCNNNNNNNGG	2 cut(s)	304, 310
AgsI	TTSAA	1 cut(s)	329
AjnI	CCWGG	2 cut(s)	276, 303
AluBI	AGCT	3 cut(s)	40, 325, 430
AluI	AGCT	3 cut(s)	40, 325, 430
Alw21I	GWGCWC	1 cut(s)	432
Alw26I	GTCTC	1 cut(s)	453
Ama87I	CYCGRG	1 cut(s)	431
AoxI	GGCC	2 cut(s)	172, 279
ArsI	GACNNNNNNTTYG	2 cut(s)	386, 418
AspLEI	GCGC	2 cut(s)	188, 421
AspS9I	GGNCC	1 cut(s)	280
AsuHPI	GGTGA	2 cut(s)	211, 419
AvaI	CYCGRG	1 cut(s)	431
BanII	GRGCYC	2 cut(s)	157, 432
Bbv12I	GWGCWC	1 cut(s)	432
BccI	CCATC	1 cut(s)	155
BceAI	ACGGC	2 cut(s)	27, 194
BciT130I	CCWGG	2 cut(s)	278, 305
BcoDI	GTCTC	1 cut(s)	453
BfmI	CTRYAG	1 cut(s)	452
BfuAI	ACCTGC	1 cut(s)	445
BisI	GCNGC	1 cut(s)	175
BlsI	GCNGC	1 cut(s)	176
Bme1390I	CCNGG	2 cut(s)	278, 305
BmeT110I	CYCGRG	1 cut(s)	431
BmgT120I	GGNCC	1 cut(s)	280
BmiI	GGNNCC	2 cut(s)	64, 378
BmrFI	CCNGG	2 cut(s)	278, 305
BsaJI	CCNNGG	3 cut(s)	58, 169, 441
BsaWI	WCCGGW	1 cut(s)	404
Bsc4I	CCNNNNNNNGG	2 cut(s)	304, 310
Bse118I	RCCGGY	1 cut(s)	373
Bse1I	ACTGG	1 cut(s)	298
BseBI	CCWGG	2 cut(s)	278, 305
BseDI	CCNNGG	3 cut(s)	58, 169, 441
BseLI	CCNNNNNNNGG	2 cut(s)	304, 310
BseNI	ACTGG	1 cut(s)	298
BseRI	GAGGAG	2 cut(s)	11, 55
Bsh1236I	CGCG	2 cut(s)	177, 419
BshFI	GGCC	2 cut(s)	174, 281
BsiHKAI	GWGCWC	1 cut(s)	432
BsiHKCI	CYCGRG	1 cut(s)	431
BsiSI	CCGG	2 cut(s)	374, 405
BslFI	GGGAC	1 cut(s)	326
BslI	CCNNNNNNNGG	2 cut(s)	304, 310
BsmAI	GTCTC	1 cut(s)	453
BsmFI	GGGAC	1 cut(s)	326
BsnI	GGCC	2 cut(s)	174, 281
BsoBI	CYCGRG	1 cut(s)	431
Bsp1286I	GDGCHC	2 cut(s)	157, 432
Bsp19I	CCATGG	1 cut(s)	58
BspACI	CCGC	5 cut(s)	143, 175, 223, 233, 253
BspANI	GGCC	2 cut(s)	174, 281
BspFNI	CGCG	2 cut(s)	177, 419
BspLI	GGNNCC	2 cut(s)	64, 378
BspMAI	CTGCAG	1 cut(s)	456
BspMI	ACCTGC	1 cut(s)	445
BspQI	GCTCTTC	1 cut(s)	389
BsrFI	RCCGGY	1 cut(s)	373
BsrI	ACTGG	1 cut(s)	298
BssAI	RCCGGY	1 cut(s)	373
BssECI	CCNNGG	3 cut(s)	58, 169, 441
BssT1I	CCWWGG	3 cut(s)	58, 169, 441
Bst2UI	CCWGG	2 cut(s)	278, 305
Bst4CI	ACNGT	1 cut(s)	205
Bst6I	CTCTTC	1 cut(s)	389
BstDSI	CCRYGG	1 cut(s)	58
BstFNI	CGCG	2 cut(s)	177, 419
BstHHI	GCGC	2 cut(s)	188, 421
BstMAI	GTCTC	1 cut(s)	453
BstMWI	GCNNNNNNNGC	3 cut(s)	183, 192, 427
BstNI	CCWGG	2 cut(s)	278, 305
BstSCI	CCNGG	2 cut(s)	276, 303
BstSFI	CTRYAG	1 cut(s)	452
BstUI	CGCG	2 cut(s)	177, 419
BsuRI	GGCC	2 cut(s)	174, 281
BtgI	CCRYGG	1 cut(s)	58
BveI	ACCTGC	1 cut(s)	445
CfoI	GCGC	2 cut(s)	188, 421
Cfr10I	RCCGGY	1 cut(s)	373
Cfr13I	GGNCC	1 cut(s)	280
CseI	GACGC	2 cut(s)	166, 425
Csp6I	GTAC	3 cut(s)	163, 244, 274
CviAII	CATG	1 cut(s)	59
CviJI	RGCY	8 cut(s)	14, 40, 63, 155, 174, 281, 325, 430
CviKI_1	RGCY	8 cut(s)	14, 40, 63, 155, 174, 281, 325, 430
CviQI	GTAC	3 cut(s)	163, 244, 274
DrdI	GACNNNNNNGTC	1 cut(s)	203
DseDI	GACNNNNNNGTC	1 cut(s)	203
Eam1104I	CTCTTC	1 cut(s)	389
EarI	CTCTTC	1 cut(s)	389
Ecl136II	GAGCTC	1 cut(s)	430
Eco130I	CCWWGG	3 cut(s)	58, 169, 441
Eco24I	GRGCYC	2 cut(s)	157, 432
Eco53kI	GAGCTC	1 cut(s)	430
Eco57I	CTGAAG	1 cut(s)	179
Eco88I	CYCGRG	1 cut(s)	431
EcoICRI	GAGCTC	1 cut(s)	430
EcoRII	CCWGG	2 cut(s)	276, 303
EcoT14I	CCWWGG	3 cut(s)	58, 169, 441
EcoT38I	GRGCYC	2 cut(s)	157, 432
ErhI	CCWWGG	3 cut(s)	58, 169, 441
FaeI	CATG	1 cut(s)	62
FaiI	YATR	1 cut(s)	60
FaqI	GGGAC	1 cut(s)	326
FatI	CATG	1 cut(s)	58
FauI	CCCGC	4 cut(s)	150, 230, 240, 246
Fnu4HI	GCNGC	1 cut(s)	175
FriOI	GRGCYC	2 cut(s)	157, 432
Fsp4HI	GCNGC	1 cut(s)	175
GlaI	GCGC	2 cut(s)	187, 420
GluI	GCNGC	1 cut(s)	175
HaeIII	GGCC	2 cut(s)	174, 281
HapII	CCGG	2 cut(s)	374, 405
HgaI	GACGC	2 cut(s)	166, 425
HhaI	GCGC	2 cut(s)	188, 421
Hin1II	CATG	1 cut(s)	62
Hin6I	GCGC	2 cut(s)	186, 419
HinP1I	GCGC	2 cut(s)	186, 419
HinfI	GANTC	2 cut(s)	436, 446
HpaII	CCGG	2 cut(s)	374, 405
HphI	GGTGA	2 cut(s)	211, 419
Hpy188I	TCNGA	1 cut(s)	152
Hpy188III	TCNNGA	2 cut(s)	259, 433
Hpy99I	CGWCG	4 cut(s)	182, 209, 215, 419
HpyAV	CCTTC	3 cut(s)	85, 121, 404
HpyCH4III	ACNGT	1 cut(s)	205
HpyCH4V	TGCA	2 cut(s)	336, 454
HpyF10VI	GCNNNNNNNGC	3 cut(s)	183, 192, 427
Hsp92II	CATG	1 cut(s)	62
HspAI	GCGC	2 cut(s)	186, 419
LguI	GCTCTTC	1 cut(s)	389
LmnI	GCTCC	1 cut(s)	68
MaeIII	GTNAC	2 cut(s)	3, 217
MboII	GAAGA	2 cut(s)	280, 406
MhlI	GDGCHC	2 cut(s)	157, 432
MlyI	GAGTC	1 cut(s)	455
MspI	CCGG	2 cut(s)	374, 405
MspR9I	CCNGG	2 cut(s)	278, 305
MvaI	CCWGG	2 cut(s)	278, 305
MvnI	CGCG	2 cut(s)	177, 419
MwoI	GCNNNNNNNGC	3 cut(s)	183, 192, 427
NcoI	CCATGG	1 cut(s)	58
NlaIII	CATG	1 cut(s)	62
NlaIV	GGNNCC	2 cut(s)	64, 378
NmuCI	GTSAC	2 cut(s)	3, 217
PciSI	GCTCTTC	1 cut(s)	389
PfeI	GAWTC	1 cut(s)	436
PflFI	GACNNNGTC	1 cut(s)	317
PkrI	GCNGC	1 cut(s)	176
PleI	GAGTC	1 cut(s)	454
PpsI	GAGTC	1 cut(s)	454
Psp124BI	GAGCTC	1 cut(s)	432
Psp6I	CCWGG	2 cut(s)	276, 303
PspGI	CCWGG	2 cut(s)	276, 303
PspN4I	GGNNCC	2 cut(s)	64, 378
PspPI	GGNCC	1 cut(s)	280
PstI	CTGCAG	1 cut(s)	456
PsyI	GACNNNGTC	1 cut(s)	317
RsaI	GTAC	3 cut(s)	164, 245, 275
RsaNI	GTAC	3 cut(s)	163, 244, 274
SacI	GAGCTC	1 cut(s)	432
SapI	GCTCTTC	1 cut(s)	389
SatI	GCNGC	1 cut(s)	175
Sau96I	GGNCC	1 cut(s)	280
SchI	GAGTC	1 cut(s)	455
ScrFI	CCNGG	2 cut(s)	278, 305
SduI	GDGCHC	2 cut(s)	157, 432
SetI	ASST	7 cut(s)	42, 74, 168, 309, 327, 432, 459
SfcI	CTRYAG	1 cut(s)	452
SsiI	CCGC	5 cut(s)	143, 175, 223, 233, 253
SstI	GAGCTC	1 cut(s)	432
StyD4I	CCNGG	2 cut(s)	276, 303
StyI	CCWWGG	3 cut(s)	58, 169, 441
TaaI	ACNGT	1 cut(s)	205
TaqI	TCGA	2 cut(s)	213, 392
TatI	WGTACW	1 cut(s)	243
TauI	GCSGC	1 cut(s)	177
TfiI	GAWTC	1 cut(s)	436
TseFI	GTSAC	2 cut(s)	3, 217
Tsp45I	GTSAC	2 cut(s)	3, 217
Tth111I	GACNNNGTC	1 cut(s)	317
XcmI	CCANNNNNNNNNTGG	1 cut(s)	305

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.