Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0016696

Physical Location & Seq

Genomic Coordinates Reverse (-)

20181540 .. 20181845

Gene Structure 306 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1209400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ATGTCACTCATAGCTTCACTTCTCCACCCCTCTCCCAAGCTCTCCACCCCCTTCCTCCATGGCTCCTCCACCCCCTTCTCCCCCCTCTCCAGACCCACTTCCTCCCTCGCCTTCCCAACCCCACAACGCCTTACTTTGCTCCCGCCCATCAGAGCCTTGAAGTACATCCAAGGCCGTGTCGTCTGCGTCACCAGTGACAAGACTGTCGCCGTCGAAGTCACCCGCCTCGCTCCGCACCCCAAGTACAAGAGGCGGGTCAGGAAGAAGAAGAAGTACCAAGCCCACGACCTGGATAACCAGTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000312 GO:0000313 GO:0000314 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009536 GO:0009547 GO:0009570 GO:0009579 GO:0009657 GO:0009941 GO:0009987 GO:0010467 GO:0015935 GO:0016043 GO:0019538 GO:0022626 GO:0022627 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032544 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0071840 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S17

Protein Analysis

102

Amino Acids

11.36

Weight (kDa)

10.84

Isoelectric Point (pI)

45.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S17	PF00366	58 - 100	3.2e-12	Ribosomal protein S17

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0016696)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79850
fragaria_vesca	FvH4_6g31770 FvH4_6g31770
malus_domestica	MD09G1209400.v1.1 MD17G1191100.v1.1
prunus_persica	Prupe.3G067300_v2.0.a1
pyrus_communis	pycom09g12560 pycom17g19820
rosa_chinensis	RchiOBHm_Chr2g0138941
rosa_laevigata	RLG00000019770
rosa_multiflora	Rmu_sc0001376.1_g000003
rosa_roxburghii	Rroxscaffold_2G00105850
rosa_rugosa	Rorug02G0353400
rosa_wichuraiana	Rw2G032820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	203
AccB7I	CCANNNNNTGG	1 cut(s)	289
AciI	CCGC	4 cut(s)	143, 223, 233, 253
AfaI	GTAC	3 cut(s)	164, 245, 275
AfiI	CCNNNNNNNGG	1 cut(s)	289
AgsI	TTSAA	1 cut(s)	160
AjnI	CCWGG	1 cut(s)	288
AloI	GAACNNNNNNTCC	1 cut(s)	284
AluBI	AGCT	2 cut(s)	14, 40
AluI	AGCT	2 cut(s)	14, 40
AoxI	GGCC	1 cut(s)	172
AsuHPI	GGTGA	2 cut(s)	181, 211
BarI	GAAGNNNNNNTAC	2 cut(s)	257, 289
BccI	CCATC	1 cut(s)	155
BceAI	ACGGC	2 cut(s)	159, 194
BciT130I	CCWGG	1 cut(s)	290
BfaI	CTAG	1 cut(s)	304
Bme1390I	CCNGG	1 cut(s)	290
BmiI	GGNNCC	1 cut(s)	64
BmrFI	CCNGG	1 cut(s)	290
BpmI	CTGGAG	1 cut(s)	73
BsaJI	CCNNGG	2 cut(s)	58, 169
Bsc4I	CCNNNNNNNGG	1 cut(s)	289
Bse1I	ACTGG	2 cut(s)	192, 298
BseBI	CCWGG	1 cut(s)	290
BseDI	CCNNGG	2 cut(s)	58, 169
BseGI	GGATG	1 cut(s)	165
BseLI	CCNNNNNNNGG	1 cut(s)	289
BseNI	ACTGG	2 cut(s)	192, 298
BseRI	GAGGAG	1 cut(s)	55
BshFI	GGCC	1 cut(s)	174
BslI	CCNNNNNNNGG	1 cut(s)	289
BsnI	GGCC	1 cut(s)	174
Bsp19I	CCATGG	1 cut(s)	58
BspACI	CCGC	4 cut(s)	143, 223, 233, 253
BspANI	GGCC	1 cut(s)	174
BspLI	GGNNCC	1 cut(s)	64
BsrI	ACTGG	2 cut(s)	192, 298
BssECI	CCNNGG	2 cut(s)	58, 169
BssT1I	CCWWGG	2 cut(s)	58, 169
Bst2UI	CCWGG	1 cut(s)	290
Bst4CI	ACNGT	1 cut(s)	205
BstDSI	CCRYGG	1 cut(s)	58
BstF5I	GGATG	1 cut(s)	165
BstNI	CCWGG	1 cut(s)	290
BstSCI	CCNGG	1 cut(s)	288
BsuRI	GGCC	1 cut(s)	174
BtgI	CCRYGG	1 cut(s)	58
BtsCI	GGATG	1 cut(s)	165
BtsIMutI	CAGTG	1 cut(s)	199
CseI	GACGC	1 cut(s)	175
Csp6I	GTAC	3 cut(s)	163, 244, 274
CviAII	CATG	1 cut(s)	59
CviJI	RGCY	6 cut(s)	14, 40, 63, 155, 174, 281
CviKI_1	RGCY	6 cut(s)	14, 40, 63, 155, 174, 281
CviQI	GTAC	3 cut(s)	163, 244, 274
DrdI	GACNNNNNNGTC	1 cut(s)	203
DseDI	GACNNNNNNGTC	1 cut(s)	203
Eco130I	CCWWGG	2 cut(s)	58, 169
EcoRII	CCWGG	1 cut(s)	288
EcoT14I	CCWWGG	2 cut(s)	58, 169
ErhI	CCWWGG	2 cut(s)	58, 169
FaeI	CATG	1 cut(s)	62
FaiI	YATR	2 cut(s)	11, 60
FatI	CATG	1 cut(s)	58
FauI	CCCGC	3 cut(s)	150, 230, 246
FokI	GGATG	1 cut(s)	152
FspBI	CTAG	1 cut(s)	304
GsuI	CTGGAG	1 cut(s)	73
HaeIII	GGCC	1 cut(s)	174
HgaI	GACGC	1 cut(s)	175
Hin1II	CATG	1 cut(s)	62
HphI	GGTGA	2 cut(s)	181, 211
Hpy188I	TCNGA	1 cut(s)	152
Hpy188III	TCNNGA	2 cut(s)	90, 259
Hpy99I	CGWCG	1 cut(s)	215
HpyAV	CCTTC	3 cut(s)	61, 85, 121
HpyCH4III	ACNGT	1 cut(s)	205
Hsp92II	CATG	1 cut(s)	62
LmnI	GCTCC	3 cut(s)	68, 144, 235
LpnPI	CCDG	5 cut(s)	103, 205, 244, 275, 302
MaeI	CTAG	1 cut(s)	304
MaeIII	GTNAC	4 cut(s)	3, 187, 194, 217
MboII	GAAGA	3 cut(s)	274, 277, 280
MnlI	CCTC	8 cut(s)	40, 65, 76, 95, 112, 116, 236, 243
MspR9I	CCNGG	1 cut(s)	290
MvaI	CCWGG	1 cut(s)	290
NcoI	CCATGG	1 cut(s)	58
NlaIII	CATG	1 cut(s)	62
NlaIV	GGNNCC	1 cut(s)	64
NmuCI	GTSAC	4 cut(s)	3, 187, 194, 217
PflMI	CCANNNNNTGG	1 cut(s)	289
Psp6I	CCWGG	1 cut(s)	288
PspGI	CCWGG	1 cut(s)	288
PspN4I	GGNNCC	1 cut(s)	64
RsaI	GTAC	3 cut(s)	164, 245, 275
RsaNI	GTAC	3 cut(s)	163, 244, 274
ScrFI	CCNGG	1 cut(s)	290
SetI	ASST	3 cut(s)	16, 42, 291
SsiI	CCGC	4 cut(s)	143, 223, 233, 253
SspMI	CTAG	1 cut(s)	304
StyD4I	CCNGG	1 cut(s)	288
StyI	CCWWGG	2 cut(s)	58, 169
TaaI	ACNGT	1 cut(s)	205
TaqI	TCGA	1 cut(s)	213
TatI	WGTACW	2 cut(s)	162, 243
TscAI	CASTG	1 cut(s)	199
TseFI	GTSAC	4 cut(s)	3, 187, 194, 217
Tsp45I	GTSAC	4 cut(s)	3, 187, 194, 217
TspRI	CASTG	1 cut(s)	199
Van91I	CCANNNNNTGG	1 cut(s)	289
XspI	CTAG	1 cut(s)	304

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.