at1g80410 (e 0.0) emb2753 emb2753 (embryo defective 2753)
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G80410 AT1G80410 |
| fragaria_vesca | FvH4_6g30900 FvH4_6g30900 |
| malus_domestica | MD09G1215200.v1.1 MD17G1197900.v1.1 |
| prunus_persica | Prupe.3G074300_v2.0.a1 |
| pyrus_communis | pycom09g13200 pycom17g20280 |
| rosa_chinensis | RchiOBHm_Chr2g0137391 |
| rosa_laevigata | RLG00000019656 |
| rosa_multiflora | Rmu_ssc0000312.1_g000014 |
| rosa_roxburghii | Rroxscaffold_2G00107080 |
| rosa_rugosa | Rorug02G0342200 |
| rosa_samantha | Rh2AG390300 Rh2BG397700 Rh2CG377600 Rh2DG413000 |
| rosa_wichuraiana | Rw2G031980 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 3 cut(s) | 518, 1390, 1865 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 2629 |
| AccI | GTMKAC | 2 cut(s) | 1902, 2272 |
| AciI | CCGC | 5 cut(s) | 172, 373, 897, 1296, 2590 |
| AclWI | GGATC | 4 cut(s) | 314, 1443, 1904, 2324 |
| AcsI | RAATTY | 2 cut(s) | 498, 2129 |
| AcuI | CTGAAG | 3 cut(s) | 201, 1593, 2190 |
| AfaI | GTAC | 8 cut(s) | 74, 260, 863, 884, 962, 1250, 1967, 2579 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 125, 1431, 2496, 2629 |
| AflII | CTTAAG | 1 cut(s) | 1640 |
| AgeI | ACCGGT | 1 cut(s) | 261 |
| AhlI | ACTAGT | 1 cut(s) | 1057 |
| AjiI | CACGTC | 1 cut(s) | 1523 |
| AjnI | CCWGG | 3 cut(s) | 398, 1102, 2064 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1523, 1555 |
| AleI | CACNNNNGTG | 1 cut(s) | 1138 |
| Alw21I | GWGCWC | 2 cut(s) | 2161, 2295 |
| Alw26I | GTCTC | 9 cut(s) | 56, 125, 339, 389, 463, 873, 1278, 1966, 2000 |
| Alw44I | GTGCAC | 1 cut(s) | 2291 |
| AlwI | GGATC | 4 cut(s) | 314, 1443, 1904, 2324 |
| Ama87I | CYCGRG | 1 cut(s) | 1815 |
| AoxI | GGCC | 3 cut(s) | 27, 784, 1215 |
| ApaLI | GTGCAC | 1 cut(s) | 2291 |
| ApeKI | GCWGC | 9 cut(s) | 92, 403, 406, 1298, 1301, 1685, 2300, 2486, 2508 |
| ApoI | RAATTY | 2 cut(s) | 498, 2129 |
| AsiGI | ACCGGT | 1 cut(s) | 261 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 573 |
| AspLEI | GCGC | 3 cut(s) | 1198, 2211, 2513 |
| AspS9I | GGNCC | 4 cut(s) | 169, 784, 1330, 2194 |
| AsuHPI | GGTGA | 5 cut(s) | 422, 1019, 1523, 1983, 2621 |
| AvaI | CYCGRG | 1 cut(s) | 1815 |
| AvaII | GGWCC | 3 cut(s) | 169, 1330, 2194 |
| AxyI | CCTNAGG | 1 cut(s) | 21 |
| BaeGI | GKGCMC | 2 cut(s) | 1395, 2295 |
| BanI | GGYRCC | 3 cut(s) | 518, 1390, 1865 |
| BanII | GRGCYC | 1 cut(s) | 1125 |
| BbsI | GAAGAC | 1 cut(s) | 2373 |
| Bbv12I | GWGCWC | 2 cut(s) | 2161, 2295 |
| BbvI | GCAGC | 9 cut(s) | 104, 415, 418, 1285, 1288, 1697, 2287, 2473, 2495 |
| BccI | CCATC | 3 cut(s) | 2221, 2490, 2631 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 869, 903 |
| BciT130I | CCWGG | 3 cut(s) | 400, 1104, 2066 |
| BciVI | GTATCC | 1 cut(s) | 903 |
| BclI | TGATCA | 2 cut(s) | 121, 1024 |
| BcoDI | GTCTC | 9 cut(s) | 56, 125, 339, 389, 463, 873, 1278, 1966, 2000 |
| BcuI | ACTAGT | 1 cut(s) | 1057 |
| BfaI | CTAG | 7 cut(s) | 716, 1058, 1320, 1334, 2198, 2405, 2459 |
| BfmI | CTRYAG | 5 cut(s) | 359, 736, 951, 1089, 1899 |
| BfoI | RGCGCY | 1 cut(s) | 2212 |
| BfrI | CTTAAG | 1 cut(s) | 1640 |
| BfuI | GTATCC | 1 cut(s) | 903 |
| BlpI | GCTNAGC | 2 cut(s) | 1161, 2205 |
| BmcAI | AGTACT | 1 cut(s) | 1967 |
| Bme1390I | CCNGG | 3 cut(s) | 400, 1104, 2066 |
| Bme18I | GGWCC | 3 cut(s) | 169, 1330, 2194 |
| BmeT110I | CYCGRG | 1 cut(s) | 1815 |
| BmgBI | CACGTC | 1 cut(s) | 1523 |
| BmgT120I | GGNCC | 4 cut(s) | 169, 784, 1330, 2194 |
| BmiI | GGNNCC | 6 cut(s) | 520, 1392, 1770, 1867, 1944, 2195 |
| BmrFI | CCNGG | 3 cut(s) | 400, 1104, 2066 |
| BmsI | GCATC | 3 cut(s) | 88, 1493, 2553 |
| BpiI | GAAGAC | 1 cut(s) | 2373 |
| BpmI | CTGGAG | 4 cut(s) | 1509, 1764, 1964, 2476 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 1161, 2205 |
| BpuEI | CTTGAG | 4 cut(s) | 71, 617, 647, 1990 |
| Bsa29I | ATCGAT | 2 cut(s) | 140, 2150 |
| BsaBI | GATNNNNATC | 3 cut(s) | 534, 2112, 2500 |
| BsaI | GGTCTC | 2 cut(s) | 339, 389 |
| BsaJI | CCNNGG | 5 cut(s) | 799, 1102, 1395, 2121, 2346 |
| BsaWI | WCCGGW | 2 cut(s) | 261, 383 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 125, 1431, 2496, 2629 |
| Bse118I | RCCGGY | 1 cut(s) | 261 |
| Bse1I | ACTGG | 3 cut(s) | 446, 865, 1860 |
| Bse21I | CCTNAGG | 1 cut(s) | 21 |
| Bse3DI | GCAATG | 3 cut(s) | 1218, 2551, 2605 |
| Bse8I | GATNNNNATC | 3 cut(s) | 534, 2112, 2500 |
| BseBI | CCWGG | 3 cut(s) | 400, 1104, 2066 |
| BseCI | ATCGAT | 2 cut(s) | 140, 2150 |
| BseDI | CCNNGG | 5 cut(s) | 799, 1102, 1395, 2121, 2346 |
| BseGI | GGATG | 4 cut(s) | 535, 893, 2585, 2623 |
| BseJI | GATNNNNATC | 3 cut(s) | 534, 2112, 2500 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 125, 1431, 2496, 2629 |
| BseMI | GCAATG | 3 cut(s) | 1218, 2551, 2605 |
| BseNI | ACTGG | 3 cut(s) | 446, 865, 1860 |
| BseRI | GAGGAG | 3 cut(s) | 614, 644, 1955 |
| BseSI | GKGCMC | 2 cut(s) | 1395, 2295 |
| BseXI | GCAGC | 9 cut(s) | 104, 415, 418, 1285, 1288, 1697, 2287, 2473, 2495 |
| BsgI | GTGCAG | 2 cut(s) | 1287, 2115 |
| BshFI | GGCC | 3 cut(s) | 29, 786, 1217 |
| BshNI | GGYRCC | 3 cut(s) | 518, 1390, 1865 |
| BshTI | ACCGGT | 1 cut(s) | 261 |
| BshVI | ATCGAT | 2 cut(s) | 140, 2150 |
| BsiHKAI | GWGCWC | 2 cut(s) | 2161, 2295 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1815 |
| BsiSI | CCGG | 2 cut(s) | 262, 384 |
| BslFI | GGGAC | 3 cut(s) | 96, 389, 1099 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 125, 1431, 2496, 2629 |
| BsmAI | GTCTC | 9 cut(s) | 56, 125, 339, 389, 463, 873, 1278, 1966, 2000 |
| BsmFI | GGGAC | 3 cut(s) | 96, 389, 1099 |
| BsmI | GAATGC | 3 cut(s) | 1364, 2060, 2666 |
| BsnI | GGCC | 3 cut(s) | 29, 786, 1217 |
| Bso31I | GGTCTC | 2 cut(s) | 339, 389 |
| BsoBI | CYCGRG | 1 cut(s) | 1815 |
| Bsp1286I | GDGCHC | 4 cut(s) | 1125, 1395, 2161, 2295 |
| Bsp1407I | TGTACA | 1 cut(s) | 2577 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 1161, 2205 |
| BspACI | CCGC | 5 cut(s) | 172, 373, 897, 1296, 2590 |
| BspANI | GGCC | 3 cut(s) | 29, 786, 1217 |
| BspDI | ATCGAT | 2 cut(s) | 140, 2150 |
| BspHI | TCATGA | 3 cut(s) | 778, 1453, 2139 |
| BspLI | GGNNCC | 6 cut(s) | 520, 1392, 1770, 1867, 1944, 2195 |
| BspMAI | CTGCAG | 1 cut(s) | 363 |
| BspPI | GGATC | 4 cut(s) | 314, 1443, 1904, 2324 |
| BspT107I | GGYRCC | 3 cut(s) | 518, 1390, 1865 |
| BspTI | CTTAAG | 1 cut(s) | 1640 |
| BspTNI | GGTCTC | 2 cut(s) | 339, 389 |
| BsrDI | GCAATG | 3 cut(s) | 1218, 2551, 2605 |
| BsrFI | RCCGGY | 1 cut(s) | 261 |
| BsrGI | TGTACA | 1 cut(s) | 2577 |
| BsrI | ACTGG | 3 cut(s) | 446, 865, 1860 |
| BssAI | RCCGGY | 1 cut(s) | 261 |
| BssECI | CCNNGG | 5 cut(s) | 799, 1102, 1395, 2121, 2346 |
| BssT1I | CCWWGG | 3 cut(s) | 799, 1395, 2121 |
| Bst2UI | CCWGG | 3 cut(s) | 400, 1104, 2066 |
| Bst4CI | ACNGT | 6 cut(s) | 164, 1237, 1355, 2438, 2467, 2609 |
| Bst6I | CTCTTC | 2 cut(s) | 41, 1018 |
| BstAFI | CTTAAG | 1 cut(s) | 1640 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 98, 2553 |
| BstAUI | TGTACA | 1 cut(s) | 2577 |
| BstC8I | GCNNGC | 6 cut(s) | 239, 363, 1037, 1278, 2058, 2549 |
| BstF5I | GGATG | 4 cut(s) | 535, 893, 2585, 2623 |
| BstH2I | RGCGCY | 1 cut(s) | 2212 |
| BstHHI | GCGC | 3 cut(s) | 1198, 2211, 2513 |
| BstMAI | GTCTC | 9 cut(s) | 56, 125, 339, 389, 463, 873, 1278, 1966, 2000 |
| BstNI | CCWGG | 3 cut(s) | 400, 1104, 2066 |
| BstNSI | RCATGY | 4 cut(s) | 245, 1280, 1462, 1471 |
| BstSCI | CCNGG | 3 cut(s) | 398, 1102, 2064 |
| BstSFI | CTRYAG | 5 cut(s) | 359, 736, 951, 1089, 1899 |
| BstSLI | GKGCMC | 2 cut(s) | 1395, 2295 |
| BstV1I | GCAGC | 9 cut(s) | 104, 415, 418, 1285, 1288, 1697, 2287, 2473, 2495 |
| BstV2I | GAAGAC | 1 cut(s) | 2373 |
| BstX2I | RGATCY | 3 cut(s) | 319, 1909, 2329 |
| BstYI | RGATCY | 3 cut(s) | 319, 1909, 2329 |
| Bsu15I | ATCGAT | 2 cut(s) | 140, 2150 |
| Bsu36I | CCTNAGG | 1 cut(s) | 21 |
| BsuI | GTATCC | 1 cut(s) | 903 |
| BsuRI | GGCC | 3 cut(s) | 29, 786, 1217 |
| BsuTUI | ATCGAT | 2 cut(s) | 140, 2150 |
| BtrI | CACGTC | 1 cut(s) | 1523 |
| BtsCI | GGATG | 4 cut(s) | 535, 893, 2585, 2623 |
| BtsI | GCAGTG | 1 cut(s) | 1469 |
| BtsIMutI | CAGTG | 5 cut(s) | 1242, 1360, 1469, 1867, 2580 |
| Cac8I | GCNNGC | 6 cut(s) | 239, 363, 1037, 1278, 2058, 2549 |
| CciI | TCATGA | 3 cut(s) | 778, 1453, 2139 |
| CfoI | GCGC | 3 cut(s) | 1198, 2211, 2513 |
| Cfr10I | RCCGGY | 1 cut(s) | 261 |
| Cfr13I | GGNCC | 4 cut(s) | 169, 784, 1330, 2194 |
| ClaI | ATCGAT | 2 cut(s) | 140, 2150 |
| Csp6I | GTAC | 8 cut(s) | 73, 259, 862, 883, 961, 1249, 1966, 2578 |
| CspAI | ACCGGT | 1 cut(s) | 261 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1580, 1615 |
| CviQI | GTAC | 8 cut(s) | 73, 259, 862, 883, 961, 1249, 1966, 2578 |
| DraI | TTTAAA | 1 cut(s) | 471 |
| Eam1104I | CTCTTC | 2 cut(s) | 41, 1018 |
| EarI | CTCTTC | 2 cut(s) | 41, 1018 |
| Eco130I | CCWWGG | 3 cut(s) | 799, 1395, 2121 |
| Eco24I | GRGCYC | 1 cut(s) | 1125 |
| Eco31I | GGTCTC | 2 cut(s) | 339, 389 |
| Eco32I | GATATC | 2 cut(s) | 220, 776 |
| Eco47I | GGWCC | 3 cut(s) | 169, 1330, 2194 |
| Eco57I | CTGAAG | 3 cut(s) | 201, 1593, 2190 |
| Eco81I | CCTNAGG | 1 cut(s) | 21 |
| Eco88I | CYCGRG | 1 cut(s) | 1815 |
| EcoO109I | RGGNCCY | 2 cut(s) | 784, 2194 |
| EcoRII | CCWGG | 3 cut(s) | 398, 1102, 2064 |
| EcoRV | GATATC | 2 cut(s) | 220, 776 |
| EcoT14I | CCWWGG | 3 cut(s) | 799, 1395, 2121 |
| EcoT38I | GRGCYC | 1 cut(s) | 1125 |
| ErhI | CCWWGG | 3 cut(s) | 799, 1395, 2121 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 575, 607, 2250, 2282 |
| FaqI | GGGAC | 3 cut(s) | 96, 389, 1099 |
| FauI | CCCGC | 2 cut(s) | 366, 2597 |
| FauNDI | CATATG | 4 cut(s) | 58, 187, 1627, 2305 |
| FbaI | TGATCA | 2 cut(s) | 121, 1024 |
| FblI | GTMKAC | 2 cut(s) | 1902, 2272 |
| FokI | GGATG | 4 cut(s) | 542, 880, 2572, 2610 |
| FriOI | GRGCYC | 1 cut(s) | 1125 |
| FspBI | CTAG | 7 cut(s) | 716, 1058, 1320, 1334, 2198, 2405, 2459 |
| GlaI | GCGC | 3 cut(s) | 1197, 2210, 2512 |
| GsuI | CTGGAG | 4 cut(s) | 1509, 1764, 1964, 2476 |
| HaeII | RGCGCY | 1 cut(s) | 2212 |
| HaeIII | GGCC | 3 cut(s) | 29, 786, 1217 |
| HapII | CCGG | 2 cut(s) | 262, 384 |
| HhaI | GCGC | 3 cut(s) | 1198, 2211, 2513 |
| Hin6I | GCGC | 3 cut(s) | 1196, 2209, 2511 |
| HinP1I | GCGC | 3 cut(s) | 1196, 2209, 2511 |
| HincII | GTYRAC | 1 cut(s) | 1737 |
| HindII | GTYRAC | 1 cut(s) | 1737 |
| HpaII | CCGG | 2 cut(s) | 262, 384 |
| HphI | GGTGA | 5 cut(s) | 422, 1019, 1523, 1983, 2621 |
| Hpy166II | GTNNAC | 7 cut(s) | 885, 1143, 1737, 1903, 2273, 2293, 2578 |
| Hpy188I | TCNGA | 9 cut(s) | 268, 344, 814, 835, 1006, 1573, 1694, 1779, 2637 |
| Hpy8I | GTNNAC | 7 cut(s) | 885, 1143, 1737, 1903, 2273, 2293, 2578 |
| Hpy99I | CGWCG | 1 cut(s) | 2654 |
| HpyAV | CCTTC | 5 cut(s) | 73, 509, 1002, 1137, 2537 |
| HpyCH4III | ACNGT | 6 cut(s) | 164, 1237, 1355, 2438, 2467, 2609 |
| HpyCH4IV | ACGT | 1 cut(s) | 1522 |
| HpySE526I | ACGT | 1 cut(s) | 1522 |
| HspAI | GCGC | 3 cut(s) | 1196, 2209, 2511 |
| Ksp22I | TGATCA | 2 cut(s) | 121, 1024 |
| LmnI | GCTCC | 5 cut(s) | 1051, 1774, 1942, 2164, 2460 |
| Lsp1109I | GCAGC | 9 cut(s) | 104, 415, 418, 1285, 1288, 1697, 2287, 2473, 2495 |
| LweI | GCATC | 3 cut(s) | 88, 1493, 2553 |
| MaeI | CTAG | 7 cut(s) | 716, 1058, 1320, 1334, 2198, 2405, 2459 |
| MaeII | ACGT | 1 cut(s) | 1522 |
| MaeIII | GTNAC | 2 cut(s) | 1374, 2609 |
| MfeI | CAATTG | 2 cut(s) | 2078, 2225 |
| MflI | RGATCY | 3 cut(s) | 319, 1909, 2329 |
| MhlI | GDGCHC | 4 cut(s) | 1125, 1395, 2161, 2295 |
| MlyI | GAGTC | 6 cut(s) | 78, 148, 1718, 2002, 2363, 2471 |
| MmeI | TCCRAC | 3 cut(s) | 858, 2168, 2186 |
| MroXI | GAANNNNTTC | 1 cut(s) | 573 |
| MslI | CAYNNNNRTG | 2 cut(s) | 569, 1138 |
| MspA1I | CMGCKG | 3 cut(s) | 95, 899, 1298 |
| MspCI | CTTAAG | 1 cut(s) | 1640 |
| MspI | CCGG | 2 cut(s) | 262, 384 |
| MspR9I | CCNGG | 3 cut(s) | 400, 1104, 2066 |
| MunI | CAATTG | 2 cut(s) | 2078, 2225 |
| Mva1269I | GAATGC | 3 cut(s) | 1364, 2060, 2666 |
| MvaI | CCWGG | 3 cut(s) | 400, 1104, 2066 |
| NdeI | CATATG | 4 cut(s) | 58, 187, 1627, 2305 |
| NlaIV | GGNNCC | 6 cut(s) | 520, 1392, 1770, 1867, 1944, 2195 |
| NmeAIII | GCCGAG | 1 cut(s) | 2539 |
| NmuCI | GTSAC | 1 cut(s) | 2609 |
| NspI | RCATGY | 4 cut(s) | 245, 1280, 1462, 1471 |
| OliI | CACNNNNGTG | 1 cut(s) | 1138 |
| PaeI | GCATGC | 1 cut(s) | 1280 |
| PagI | TCATGA | 3 cut(s) | 778, 1453, 2139 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 2658 |
| PctI | GAATGC | 3 cut(s) | 1364, 2060, 2666 |
| PdmI | GAANNNNTTC | 1 cut(s) | 573 |
| PfeI | GAWTC | 6 cut(s) | 574, 1850, 2108, 2147, 2282, 2570 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 2629 |
| PinAI | ACCGGT | 1 cut(s) | 261 |
| PleI | GAGTC | 6 cut(s) | 78, 148, 1718, 2002, 2363, 2471 |
| PpsI | GAGTC | 6 cut(s) | 78, 148, 1718, 2002, 2363, 2471 |
| PpuMI | RGGWCCY | 1 cut(s) | 2194 |
| Psp5II | RGGWCCY | 1 cut(s) | 2194 |
| Psp6I | CCWGG | 3 cut(s) | 398, 1102, 2064 |
| PspGI | CCWGG | 3 cut(s) | 398, 1102, 2064 |
| PspN4I | GGNNCC | 6 cut(s) | 520, 1392, 1770, 1867, 1944, 2195 |
| PspPI | GGNCC | 4 cut(s) | 169, 784, 1330, 2194 |
| PspPPI | RGGWCCY | 1 cut(s) | 2194 |
| PstI | CTGCAG | 1 cut(s) | 363 |
| PsuI | RGATCY | 3 cut(s) | 319, 1909, 2329 |
| PvuII | CAGCTG | 1 cut(s) | 95 |
| RsaI | GTAC | 8 cut(s) | 74, 260, 863, 884, 962, 1250, 1967, 2579 |
| RsaNI | GTAC | 8 cut(s) | 73, 259, 862, 883, 961, 1249, 1966, 2578 |
| RseI | CAYNNNNRTG | 2 cut(s) | 569, 1138 |
| Sau96I | GGNCC | 4 cut(s) | 169, 784, 1330, 2194 |
| ScaI | AGTACT | 1 cut(s) | 1967 |
| SchI | GAGTC | 6 cut(s) | 78, 148, 1718, 2002, 2363, 2471 |
| ScrFI | CCNGG | 3 cut(s) | 400, 1104, 2066 |
| SduI | GDGCHC | 4 cut(s) | 1125, 1395, 2161, 2295 |
| SfaNI | GCATC | 3 cut(s) | 88, 1493, 2553 |
| SfcI | CTRYAG | 5 cut(s) | 359, 736, 951, 1089, 1899 |
| SinI | GGWCC | 3 cut(s) | 169, 1330, 2194 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 569, 1138 |
| SmlI | CTYRAG | 5 cut(s) | 86, 596, 626, 1640, 1969 |
| SmoI | CTYRAG | 5 cut(s) | 86, 596, 626, 1640, 1969 |
| SpeI | ACTAGT | 1 cut(s) | 1057 |
| SphI | GCATGC | 1 cut(s) | 1280 |
| SsiI | CCGC | 5 cut(s) | 172, 373, 897, 1296, 2590 |
| SspI | AATATT | 1 cut(s) | 827 |
| SspMI | CTAG | 7 cut(s) | 716, 1058, 1320, 1334, 2198, 2405, 2459 |
| StyD4I | CCNGG | 3 cut(s) | 398, 1102, 2064 |
| StyI | CCWWGG | 3 cut(s) | 799, 1395, 2121 |
| TaaI | ACNGT | 6 cut(s) | 164, 1237, 1355, 2438, 2467, 2609 |
| TaiI | ACGT | 1 cut(s) | 1525 |
| TaqI | TCGA | 6 cut(s) | 140, 199, 1079, 2150, 2475, 2661 |
| TaqII | GACCGA | 2 cut(s) | 879, 1668 |
| TatI | WGTACW | 6 cut(s) | 72, 882, 960, 1248, 1965, 2577 |
| TauI | GCSGC | 1 cut(s) | 1298 |
| TfiI | GAWTC | 6 cut(s) | 574, 1850, 2108, 2147, 2282, 2570 |
| TscAI | CASTG | 5 cut(s) | 1242, 1360, 1469, 1867, 2580 |
| TseFI | GTSAC | 1 cut(s) | 2609 |
| TseI | GCWGC | 9 cut(s) | 92, 403, 406, 1298, 1301, 1685, 2300, 2486, 2508 |
| Tsp45I | GTSAC | 1 cut(s) | 2609 |
| TspGWI | ACGGA | 3 cut(s) | 1243, 1493, 2667 |
| TspRI | CASTG | 5 cut(s) | 1242, 1360, 1469, 1867, 2580 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 2629 |
| Vha464I | CTTAAG | 1 cut(s) | 1640 |
| VneI | GTGCAC | 1 cut(s) | 2291 |
| VpaK11BI | GGWCC | 3 cut(s) | 169, 1330, 2194 |
| XapI | RAATTY | 2 cut(s) | 498, 2129 |
| XbaI | TCTAGA | 1 cut(s) | 715 |
| XceI | RCATGY | 4 cut(s) | 245, 1280, 1462, 1471 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 797 |
| XmiI | GTMKAC | 2 cut(s) | 1902, 2272 |
| XmnI | GAANNNNTTC | 1 cut(s) | 573 |
| XspI | CTAG | 7 cut(s) | 716, 1058, 1320, 1334, 2198, 2405, 2459 |
| ZrmI | AGTACT | 1 cut(s) | 1967 |