NatA auxiliary
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G80410 AT1G80410 |
| fragaria_vesca | FvH4_6g30900 FvH4_6g30900 |
| malus_domestica | MD09G1215200.v1.1 MD17G1197900.v1.1 |
| prunus_persica | Prupe.3G074300_v2.0.a1 |
| pyrus_communis | pycom09g13200 pycom17g20280 |
| rosa_chinensis | RchiOBHm_Chr2g0137391 |
| rosa_laevigata | RLG00000019656 |
| rosa_multiflora | Rmu_ssc0000312.1_g000014 |
| rosa_roxburghii | Rroxscaffold_2G00107080 |
| rosa_rugosa | Rorug02G0342200 |
| rosa_samantha | Rh2AG390300 Rh2BG397700 Rh2CG377600 Rh2DG413000 |
| rosa_wichuraiana | Rw2G031980 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 2056 |
| AccB1I | GGYRCC | 1 cut(s) | 5 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 125 |
| AccI | GTMKAC | 2 cut(s) | 2277, 2583 |
| AccIII | TCCGGA | 3 cut(s) | 198, 541, 2293 |
| AciI | CCGC | 2 cut(s) | 373, 1964 |
| AclI | AACGTT | 1 cut(s) | 553 |
| AclWI | GGATC | 7 cut(s) | 314, 1027, 1040, 1461, 2030, 2036, 2069 |
| AcsI | RAATTY | 8 cut(s) | 498, 940, 1658, 1766, 2119, 2261, 2392, 2782 |
| AcuI | CTGAAG | 5 cut(s) | 107, 201, 1890, 2096, 2225 |
| AcvI | CACGTG | 1 cut(s) | 1949 |
| AfaI | GTAC | 4 cut(s) | 278, 986, 2099, 2700 |
| AflII | CTTAAG | 2 cut(s) | 1726, 2594 |
| AjiI | CACGTC | 1 cut(s) | 1315 |
| AjnI | CCWGG | 3 cut(s) | 750, 1153, 1225 |
| AleI | CACNNNNGTG | 1 cut(s) | 1261 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1167, 1199 |
| Alw21I | GWGCWC | 3 cut(s) | 748, 1350, 1651 |
| Alw26I | GTCTC | 4 cut(s) | 389, 463, 2132, 2291 |
| AlwI | GGATC | 7 cut(s) | 314, 1027, 1040, 1461, 2030, 2036, 2069 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 1814, 2203, 2215 |
| Ama87I | CYCGRG | 1 cut(s) | 923 |
| Aor13HI | TCCGGA | 3 cut(s) | 198, 541, 2293 |
| AoxI | GGCC | 5 cut(s) | 27, 1091, 1266, 1303, 1338 |
| ApoI | RAATTY | 8 cut(s) | 498, 940, 1658, 1766, 2119, 2261, 2392, 2782 |
| AseI | ATTAAT | 1 cut(s) | 2492 |
| AspLEI | GCGC | 4 cut(s) | 310, 595, 1494, 2343 |
| AspS9I | GGNCC | 2 cut(s) | 169, 1266 |
| AsuHPI | GGTGA | 9 cut(s) | 835, 945, 1067, 1142, 1222, 1418, 1568, 1625, 1646 |
| AsuNHI | GCTAGC | 1 cut(s) | 2188 |
| AvaI | CYCGRG | 1 cut(s) | 923 |
| AvaII | GGWCC | 1 cut(s) | 169 |
| BamHI | GGATCC | 1 cut(s) | 1032 |
| BanI | GGYRCC | 1 cut(s) | 5 |
| BanII | GRGCYC | 4 cut(s) | 748, 1248, 1651, 2539 |
| BbrPI | CACGTG | 1 cut(s) | 1949 |
| BbsI | GAAGAC | 2 cut(s) | 1008, 1704 |
| Bbv12I | GWGCWC | 3 cut(s) | 748, 1350, 1651 |
| BccI | CCATC | 3 cut(s) | 471, 1547, 2625 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 1187, 1221, 2563, 2597 |
| BciT130I | CCWGG | 3 cut(s) | 752, 1155, 1227 |
| BclI | TGATCA | 4 cut(s) | 532, 1147, 1507, 1558 |
| BcoDI | GTCTC | 4 cut(s) | 389, 463, 2132, 2291 |
| BfaI | CTAG | 7 cut(s) | 524, 626, 653, 719, 839, 1443, 2189 |
| BfmI | CTRYAG | 3 cut(s) | 298, 1499, 2031 |
| BfoI | RGCGCY | 1 cut(s) | 2344 |
| BfrI | CTTAAG | 2 cut(s) | 1726, 2594 |
| BfuAI | ACCTGC | 1 cut(s) | 2056 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 2198 |
| BlpI | GCTNAGC | 2 cut(s) | 648, 1284 |
| BmcAI | AGTACT | 1 cut(s) | 2099 |
| Bme1390I | CCNGG | 3 cut(s) | 752, 1155, 1227 |
| Bme18I | GGWCC | 1 cut(s) | 169 |
| BmeT110I | CYCGRG | 1 cut(s) | 923 |
| BmgBI | CACGTC | 1 cut(s) | 1315 |
| BmgT120I | GGNCC | 2 cut(s) | 169, 1266 |
| BmiI | GGNNCC | 8 cut(s) | 7, 1034, 1245, 1515, 2463, 2520, 2536, 2764 |
| BmrFI | CCNGG | 3 cut(s) | 752, 1155, 1227 |
| BmrI | ACTGGG | 1 cut(s) | 940 |
| BmsI | GCATC | 7 cut(s) | 88, 1436, 1817, 2254, 2274, 2412, 2605 |
| BmtI | GCTAGC | 1 cut(s) | 2192 |
| BmuI | ACTGGG | 1 cut(s) | 940 |
| BpiI | GAAGAC | 2 cut(s) | 1008, 1704 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1592, 1624 |
| BpmI | CTGGAG | 1 cut(s) | 734 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 648, 1284 |
| BpuEI | CTTGAG | 3 cut(s) | 617, 1208, 2549 |
| Bsa29I | ATCGAT | 1 cut(s) | 262 |
| BsaAI | YACGTR | 2 cut(s) | 344, 1949 |
| BsaBI | GATNNNNATC | 4 cut(s) | 534, 1557, 2040, 2244 |
| BsaJI | CCNNGG | 8 cut(s) | 124, 922, 1153, 1225, 1226, 2133, 2539, 2746 |
| BsaWI | WCCGGW | 3 cut(s) | 198, 541, 2293 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 393, 423, 2045, 2075 |
| Bse1I | ACTGG | 3 cut(s) | 946, 1219, 1702 |
| Bse3DI | GCAATG | 2 cut(s) | 713, 2766 |
| Bse8I | GATNNNNATC | 4 cut(s) | 534, 1557, 2040, 2244 |
| BseAI | TCCGGA | 3 cut(s) | 198, 541, 2293 |
| BseBI | CCWGG | 3 cut(s) | 752, 1155, 1227 |
| BseCI | ATCGAT | 1 cut(s) | 262 |
| BseDI | CCNNGG | 8 cut(s) | 124, 922, 1153, 1225, 1226, 2133, 2539, 2746 |
| BseGI | GGATG | 1 cut(s) | 535 |
| BseJI | GATNNNNATC | 4 cut(s) | 534, 1557, 2040, 2244 |
| BseMI | GCAATG | 2 cut(s) | 713, 2766 |
| BseMII | CTCAG | 6 cut(s) | 639, 1298, 1919, 2118, 2207, 2640 |
| BseNI | ACTGG | 3 cut(s) | 946, 1219, 1702 |
| BseRI | GAGGAG | 1 cut(s) | 1128 |
| BshFI | GGCC | 5 cut(s) | 29, 1093, 1268, 1305, 1340 |
| BshNI | GGYRCC | 1 cut(s) | 5 |
| BshVI | ATCGAT | 1 cut(s) | 262 |
| BsiHKAI | GWGCWC | 3 cut(s) | 748, 1350, 1651 |
| BsiHKCI | CYCGRG | 1 cut(s) | 923 |
| BsiSI | CCGG | 4 cut(s) | 199, 542, 1627, 2294 |
| BslFI | GGGAC | 2 cut(s) | 337, 625 |
| BsmAI | GTCTC | 4 cut(s) | 389, 463, 2132, 2291 |
| BsmFI | GGGAC | 2 cut(s) | 337, 625 |
| BsmI | GAATGC | 3 cut(s) | 1198, 1783, 2230 |
| BsnI | GGCC | 5 cut(s) | 29, 1093, 1268, 1305, 1340 |
| BsoBI | CYCGRG | 1 cut(s) | 923 |
| Bsp1286I | GDGCHC | 5 cut(s) | 748, 1248, 1350, 1651, 2539 |
| Bsp13I | TCCGGA | 3 cut(s) | 198, 541, 2293 |
| Bsp1407I | TGTACA | 1 cut(s) | 984 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 648, 1284 |
| Bsp19I | CCATGG | 2 cut(s) | 124, 2746 |
| BspACI | CCGC | 2 cut(s) | 373, 1964 |
| BspANI | GGCC | 5 cut(s) | 29, 1093, 1268, 1305, 1340 |
| BspCNI | CTCAG | 6 cut(s) | 640, 1297, 1918, 2119, 2208, 2641 |
| BspDI | ATCGAT | 1 cut(s) | 262 |
| BspEI | TCCGGA | 3 cut(s) | 198, 541, 2293 |
| BspHI | TCATGA | 2 cut(s) | 1576, 2816 |
| BspLI | GGNNCC | 8 cut(s) | 7, 1034, 1245, 1515, 2463, 2520, 2536, 2764 |
| BspMAI | CTGCAG | 1 cut(s) | 1503 |
| BspMI | ACCTGC | 1 cut(s) | 2056 |
| BspOI | GCTAGC | 1 cut(s) | 2192 |
| BspPI | GGATC | 7 cut(s) | 314, 1027, 1040, 1461, 2030, 2036, 2069 |
| BspT107I | GGYRCC | 1 cut(s) | 5 |
| BspTI | CTTAAG | 2 cut(s) | 1726, 2594 |
| BsrDI | GCAATG | 2 cut(s) | 713, 2766 |
| BsrGI | TGTACA | 1 cut(s) | 984 |
| BsrI | ACTGG | 3 cut(s) | 946, 1219, 1702 |
| BssECI | CCNNGG | 8 cut(s) | 124, 922, 1153, 1225, 1226, 2133, 2539, 2746 |
| BssT1I | CCWWGG | 4 cut(s) | 124, 2133, 2539, 2746 |
| Bst2UI | CCWGG | 3 cut(s) | 752, 1155, 1227 |
| Bst4CI | ACNGT | 6 cut(s) | 173, 616, 858, 1360, 1478, 2581 |
| Bst6I | CTCTTC | 2 cut(s) | 41, 104 |
| BstAFI | CTTAAG | 2 cut(s) | 1726, 2594 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 98, 1817, 2738 |
| BstAUI | TGTACA | 1 cut(s) | 984 |
| BstBAI | YACGTR | 2 cut(s) | 344, 1949 |
| BstC8I | GCNNGC | 8 cut(s) | 239, 1401, 1496, 1503, 1605, 2190, 2289, 2761 |
| BstDEI | CTNAG | 8 cut(s) | 648, 1104, 1284, 1905, 1953, 2127, 2216, 2649 |
| BstDSI | CCRYGG | 2 cut(s) | 124, 2746 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 359, 1103 |
| BstF5I | GGATG | 1 cut(s) | 535 |
| BstH2I | RGCGCY | 1 cut(s) | 2344 |
| BstHHI | GCGC | 4 cut(s) | 310, 595, 1494, 2343 |
| BstMAI | GTCTC | 4 cut(s) | 389, 463, 2132, 2291 |
| BstNI | CCWGG | 3 cut(s) | 752, 1155, 1227 |
| BstNSI | RCATGY | 5 cut(s) | 245, 1403, 1498, 1594, 1793 |
| BstSCI | CCNGG | 3 cut(s) | 750, 1153, 1225 |
| BstSFI | CTRYAG | 3 cut(s) | 298, 1499, 2031 |
| BstV2I | GAAGAC | 2 cut(s) | 1008, 1704 |
| BstX2I | RGATCY | 5 cut(s) | 319, 1032, 1453, 2035, 2041 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 2515 |
| BstYI | RGATCY | 5 cut(s) | 319, 1032, 1453, 2035, 2041 |
| Bsu15I | ATCGAT | 1 cut(s) | 262 |
| BsuRI | GGCC | 5 cut(s) | 29, 1093, 1268, 1305, 1340 |
| BsuTUI | ATCGAT | 1 cut(s) | 262 |
| BtgI | CCRYGG | 2 cut(s) | 124, 2746 |
| BtgZI | GCGATG | 3 cut(s) | 416, 2231, 2656 |
| BtrI | CACGTC | 1 cut(s) | 1315 |
| BtsCI | GGATG | 1 cut(s) | 535 |
| BtsI | GCAGTG | 1 cut(s) | 1592 |
| BtsIMutI | CAGTG | 2 cut(s) | 1483, 1592 |
| BveI | ACCTGC | 1 cut(s) | 2056 |
| Cac8I | GCNNGC | 8 cut(s) | 239, 1401, 1496, 1503, 1605, 2190, 2289, 2761 |
| CaiI | CAGNNNCTG | 3 cut(s) | 1814, 2203, 2215 |
| CciI | TCATGA | 2 cut(s) | 1576, 2816 |
| CfoI | GCGC | 4 cut(s) | 310, 595, 1494, 2343 |
| Cfr13I | GGNCC | 2 cut(s) | 169, 1266 |
| ClaI | ATCGAT | 1 cut(s) | 262 |
| Csp6I | GTAC | 4 cut(s) | 277, 985, 2098, 2699 |
| CviQI | GTAC | 4 cut(s) | 277, 985, 2098, 2699 |
| DdeI | CTNAG | 8 cut(s) | 648, 1104, 1284, 1905, 1953, 2127, 2216, 2649 |
| DraI | TTTAAA | 2 cut(s) | 471, 2797 |
| Eam1104I | CTCTTC | 2 cut(s) | 41, 104 |
| EarI | CTCTTC | 2 cut(s) | 41, 104 |
| EciI | GGCGGA | 1 cut(s) | 1979 |
| Ecl136II | GAGCTC | 2 cut(s) | 746, 1649 |
| Eco130I | CCWWGG | 4 cut(s) | 124, 2133, 2539, 2746 |
| Eco147I | AGGCCT | 1 cut(s) | 1093 |
| Eco24I | GRGCYC | 4 cut(s) | 748, 1248, 1651, 2539 |
| Eco47I | GGWCC | 1 cut(s) | 169 |
| Eco53kI | GAGCTC | 2 cut(s) | 746, 1649 |
| Eco57I | CTGAAG | 5 cut(s) | 107, 201, 1890, 2096, 2225 |
| Eco72I | CACGTG | 1 cut(s) | 1949 |
| Eco88I | CYCGRG | 1 cut(s) | 923 |
| EcoICRI | GAGCTC | 2 cut(s) | 746, 1649 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 359, 1103 |
| EcoRI | GAATTC | 1 cut(s) | 2119 |
| EcoRII | CCWGG | 3 cut(s) | 750, 1153, 1225 |
| EcoT14I | CCWWGG | 4 cut(s) | 124, 2133, 2539, 2746 |
| EcoT22I | ATGCAT | 3 cut(s) | 1451, 1795, 2427 |
| EcoT38I | GRGCYC | 4 cut(s) | 748, 1248, 1651, 2539 |
| ErhI | CCWWGG | 4 cut(s) | 124, 2133, 2539, 2746 |
| FaqI | GGGAC | 2 cut(s) | 337, 625 |
| FauI | CCCGC | 1 cut(s) | 366 |
| FauNDI | CATATG | 3 cut(s) | 58, 187, 511 |
| FbaI | TGATCA | 4 cut(s) | 532, 1147, 1507, 1558 |
| FblI | GTMKAC | 2 cut(s) | 2277, 2583 |
| FokI | GGATG | 1 cut(s) | 522 |
| FriOI | GRGCYC | 4 cut(s) | 748, 1248, 1651, 2539 |
| FspBI | CTAG | 7 cut(s) | 524, 626, 653, 719, 839, 1443, 2189 |
| GlaI | GCGC | 4 cut(s) | 309, 594, 1493, 2342 |
| GsuI | CTGGAG | 1 cut(s) | 734 |
| HaeII | RGCGCY | 1 cut(s) | 2344 |
| HaeIII | GGCC | 5 cut(s) | 29, 1093, 1268, 1305, 1340 |
| HapII | CCGG | 4 cut(s) | 199, 542, 1627, 2294 |
| HhaI | GCGC | 4 cut(s) | 310, 595, 1494, 2343 |
| Hin6I | GCGC | 4 cut(s) | 308, 593, 1492, 2341 |
| HinP1I | GCGC | 4 cut(s) | 308, 593, 1492, 2341 |
| HincII | GTYRAC | 5 cut(s) | 153, 588, 2071, 2278, 2584 |
| HindII | GTYRAC | 5 cut(s) | 153, 588, 2071, 2278, 2584 |
| HindIII | AAGCTT | 1 cut(s) | 827 |
| HpaI | GTTAAC | 2 cut(s) | 153, 588 |
| HpaII | CCGG | 4 cut(s) | 199, 542, 1627, 2294 |
| HphI | GGTGA | 9 cut(s) | 835, 945, 1067, 1142, 1222, 1418, 1568, 1625, 1646 |
| Hpy166II | GTNNAC | 7 cut(s) | 153, 588, 693, 1545, 2071, 2278, 2584 |
| Hpy8I | GTNNAC | 7 cut(s) | 153, 588, 693, 1545, 2071, 2278, 2584 |
| HpyCH4III | ACNGT | 6 cut(s) | 173, 616, 858, 1360, 1478, 2581 |
| HpyCH4IV | ACGT | 5 cut(s) | 343, 553, 1314, 1948, 2600 |
| HpyF3I | CTNAG | 8 cut(s) | 648, 1104, 1284, 1905, 1953, 2127, 2216, 2649 |
| HpySE526I | ACGT | 5 cut(s) | 343, 553, 1314, 1948, 2600 |
| HspAI | GCGC | 4 cut(s) | 308, 593, 1492, 2341 |
| Kpn2I | TCCGGA | 3 cut(s) | 198, 541, 2293 |
| Ksp22I | TGATCA | 4 cut(s) | 532, 1147, 1507, 1558 |
| KspAI | GTTAAC | 2 cut(s) | 153, 588 |
| LmnI | GCTCC | 7 cut(s) | 1195, 1243, 2296, 2322, 2333, 2534, 2768 |
| LweI | GCATC | 7 cut(s) | 88, 1436, 1817, 2254, 2274, 2412, 2605 |
| MaeI | CTAG | 7 cut(s) | 524, 626, 653, 719, 839, 1443, 2189 |
| MaeII | ACGT | 5 cut(s) | 343, 553, 1314, 1948, 2600 |
| MaeIII | GTNAC | 2 cut(s) | 344, 1210 |
| MflI | RGATCY | 5 cut(s) | 319, 1032, 1453, 2035, 2041 |
| MhlI | GDGCHC | 5 cut(s) | 748, 1248, 1350, 1651, 2539 |
| MlyI | GAGTC | 4 cut(s) | 1393, 1732, 2138, 2583 |
| MmeI | TCCRAC | 2 cut(s) | 1173, 1379 |
| Mph1103I | ATGCAT | 3 cut(s) | 1451, 1795, 2427 |
| MroI | TCCGGA | 3 cut(s) | 198, 541, 2293 |
| MslI | CAYNNNNRTG | 4 cut(s) | 246, 1261, 1404, 1788 |
| MspA1I | CMGCKG | 2 cut(s) | 1011, 1814 |
| MspCI | CTTAAG | 2 cut(s) | 1726, 2594 |
| MspI | CCGG | 4 cut(s) | 199, 542, 1627, 2294 |
| MspR9I | CCNGG | 3 cut(s) | 752, 1155, 1227 |
| Mva1269I | GAATGC | 3 cut(s) | 1198, 1783, 2230 |
| MvaI | CCWGG | 3 cut(s) | 752, 1155, 1227 |
| NcoI | CCATGG | 2 cut(s) | 124, 2746 |
| NdeI | CATATG | 3 cut(s) | 58, 187, 511 |
| NheI | GCTAGC | 1 cut(s) | 2188 |
| NlaIV | GGNNCC | 8 cut(s) | 7, 1034, 1245, 1515, 2463, 2520, 2536, 2764 |
| NmuCI | GTSAC | 2 cut(s) | 344, 1210 |
| NsiI | ATGCAT | 3 cut(s) | 1451, 1795, 2427 |
| NspI | RCATGY | 5 cut(s) | 245, 1403, 1498, 1594, 1793 |
| OliI | CACNNNNGTG | 1 cut(s) | 1261 |
| PaeI | GCATGC | 2 cut(s) | 1403, 1498 |
| PagI | TCATGA | 2 cut(s) | 1576, 2816 |
| PasI | CCCWGGG | 1 cut(s) | 1226 |
| PceI | AGGCCT | 1 cut(s) | 1093 |
| PctI | GAATGC | 3 cut(s) | 1198, 1783, 2230 |
| PfeI | GAWTC | 8 cut(s) | 880, 1847, 1982, 2182, 2240, 2414, 2501, 2705 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 125 |
| PfoI | TCCNGGA | 1 cut(s) | 750 |
| PleI | GAGTC | 4 cut(s) | 1392, 1732, 2137, 2583 |
| PmaCI | CACGTG | 1 cut(s) | 1949 |
| PmlI | CACGTG | 1 cut(s) | 1949 |
| PpsI | GAGTC | 4 cut(s) | 1392, 1732, 2137, 2583 |
| Ppu21I | YACGTR | 2 cut(s) | 344, 1949 |
| PshBI | ATTAAT | 1 cut(s) | 2492 |
| Psp124BI | GAGCTC | 2 cut(s) | 748, 1651 |
| Psp1406I | AACGTT | 1 cut(s) | 553 |
| Psp6I | CCWGG | 3 cut(s) | 750, 1153, 1225 |
| PspCI | CACGTG | 1 cut(s) | 1949 |
| PspGI | CCWGG | 3 cut(s) | 750, 1153, 1225 |
| PspN4I | GGNNCC | 8 cut(s) | 7, 1034, 1245, 1515, 2463, 2520, 2536, 2764 |
| PspPI | GGNCC | 2 cut(s) | 169, 1266 |
| PstI | CTGCAG | 1 cut(s) | 1503 |
| PstNI | CAGNNNCTG | 3 cut(s) | 1814, 2203, 2215 |
| PsuI | RGATCY | 5 cut(s) | 319, 1032, 1453, 2035, 2041 |
| PvuII | CAGCTG | 2 cut(s) | 1011, 1814 |
| RsaI | GTAC | 4 cut(s) | 278, 986, 2099, 2700 |
| RsaNI | GTAC | 4 cut(s) | 277, 985, 2098, 2699 |
| RseI | CAYNNNNRTG | 4 cut(s) | 246, 1261, 1404, 1788 |
| SacI | GAGCTC | 2 cut(s) | 748, 1651 |
| SalI | GTCGAC | 2 cut(s) | 2276, 2582 |
| Sau96I | GGNCC | 2 cut(s) | 169, 1266 |
| ScaI | AGTACT | 1 cut(s) | 2099 |
| SchI | GAGTC | 4 cut(s) | 1393, 1732, 2138, 2583 |
| ScrFI | CCNGG | 3 cut(s) | 752, 1155, 1227 |
| SduI | GDGCHC | 5 cut(s) | 748, 1248, 1350, 1651, 2539 |
| SfaNI | GCATC | 7 cut(s) | 88, 1436, 1817, 2254, 2274, 2412, 2605 |
| SfcI | CTRYAG | 3 cut(s) | 298, 1499, 2031 |
| SinI | GGWCC | 1 cut(s) | 169 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 246, 1261, 1404, 1788 |
| SmlI | CTYRAG | 5 cut(s) | 596, 1187, 1726, 2564, 2594 |
| SmoI | CTYRAG | 5 cut(s) | 596, 1187, 1726, 2564, 2594 |
| SphI | GCATGC | 2 cut(s) | 1403, 1498 |
| SseBI | AGGCCT | 1 cut(s) | 1093 |
| SsiI | CCGC | 2 cut(s) | 373, 1964 |
| SspI | AATATT | 1 cut(s) | 331 |
| SspMI | CTAG | 7 cut(s) | 524, 626, 653, 719, 839, 1443, 2189 |
| SstI | GAGCTC | 2 cut(s) | 748, 1651 |
| StuI | AGGCCT | 1 cut(s) | 1093 |
| StyD4I | CCNGG | 3 cut(s) | 750, 1153, 1225 |
| StyI | CCWWGG | 4 cut(s) | 124, 2133, 2539, 2746 |
| TaaI | ACNGT | 6 cut(s) | 173, 616, 858, 1360, 1478, 2581 |
| TaiI | ACGT | 5 cut(s) | 346, 556, 1317, 1951, 2603 |
| TaqI | TCGA | 7 cut(s) | 262, 631, 783, 2277, 2356, 2504, 2583 |
| TatI | WGTACW | 3 cut(s) | 276, 984, 2097 |
| TfiI | GAWTC | 8 cut(s) | 880, 1847, 1982, 2182, 2240, 2414, 2501, 2705 |
| TscAI | CASTG | 2 cut(s) | 1483, 1592 |
| TseFI | GTSAC | 2 cut(s) | 344, 1210 |
| Tsp45I | GTSAC | 2 cut(s) | 344, 1210 |
| TspRI | CASTG | 2 cut(s) | 1483, 1592 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 125 |
| Vha464I | CTTAAG | 2 cut(s) | 1726, 2594 |
| VpaK11BI | GGWCC | 1 cut(s) | 169 |
| VspI | ATTAAT | 1 cut(s) | 2492 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 359, 1103 |
| XapI | RAATTY | 8 cut(s) | 498, 940, 1658, 1766, 2119, 2261, 2392, 2782 |
| XceI | RCATGY | 5 cut(s) | 245, 1403, 1498, 1594, 1793 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 2744 |
| XmiI | GTMKAC | 2 cut(s) | 2277, 2583 |
| XspI | CTAG | 7 cut(s) | 524, 626, 653, 719, 839, 1443, 2189 |
| ZrmI | AGTACT | 1 cut(s) | 2099 |
| Zsp2I | ATGCAT | 3 cut(s) | 1451, 1795, 2427 |