Rorug02G0342200

NatA auxiliary

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0012120
Physical Location & Seq
Forward (+)
42576567 .. 42582092
5526 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0342200.1

Sequence Viewer

Length: 1197 bp
ATGGCAGCCCTGAAGCTCCTCTTCTCCTCGGCTCGCCGCCACTGCTCCCATCTCCACCCGTCTCCATTTCTAAGGTCCCTCACTTCCCAATCAGATCAAATTCCCTCTCCTCCCGAACCCCTTAAACCCCAGCCCGCTCCGATCGAACCCGTCTCCTACGCTCCCAAACCCAAACAACACTCCTCCTCACCCGACCCGGACCCGGCTCCGCAATCGGCACAAACACAACCGCCGCCACCGTCGCACGCGCCTCCTCAGGACTCGCCGTGGACACGAGAAGACGCCCGGTTCGTGAAGGACGGGCCTTCCATAACCCCGGTGTCGTACCCGGCCCGAGTGGCTCCGTTGCCGGAAGATAAGGTCTCGGAGGAAGGCGGCGACGCGAGGCAGGGTGAGCTGGAGAAGGAGAAGCAGAGAATCGAGCAGTCGAGAAGGAGGGTTTTTAGGGTAGAGGAGAATGTGGTGGTTCCTTTCCCCACGTTTCTTAAGGTGGAGAAGAAGGAGAGGAATCCCATTCTTGATTTGATGGAAGCAATTCGACAAGTCAAGGCTACTGCCAAGTGCAACTTTGATGAAACTGTTGAAGCTCACGTGCAATTGGGTATTGATGCCAAGCGAAATGCAGTTCGTGGCAACATGACCTTGCCCCATGGTAGTGGAAAGGTAGTCAGGGTTGCTTTCTTTGCTGAAGGTGCAGATGCAGATGAAGCTAGAGCTGCTGGAGCAGATATTGTTGGCGGTGTTGACCTTGTGGAGGAAATTGCAAGCAGTCGTAAACTCAATGTTGACAAGTGTTTTGCAACAAATGAAATGGTTATGCGTCTAGCAAAGATAGCAAGGATTCTTAGAGAGCGTGGTTTAATGCCTGACCGAAAACTAGGTACTGTGACTAACGACATTGCTGGGGCACTACAAAAAGTAAGACAAGGTCATATTGAGTATAAAATGGACAGAACATCAATAGTTCATGTTGGGCTCGGAAAGGTAAGCTTTACAGAGGAGTATCTGCGTGAGAATGTTGGTGCATTTATGAGTTCTCTTTTGCTGGCAAAGCCTACGGGTTTAAAAAAGTCTTCCAAATATGCTGGGTATATCAACTCTTTCCACATATGTAGCACAATGGGCTCAGGATTTCCAGTTTCAATACAGTCACTATCCAAAGCTGCAGATAACTACAATAAAATGCACCTCAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NARP1 TPR_2 TPR_8

Protein Analysis

398

Amino Acids

43.78

Weight (kDa)

9.25

Isoelectric Point (pI)

61.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L1 PF00687 182 - 375 7.2e-46 Ribosomal protein L1p/L10e family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012120)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80410 AT1G80410
fragaria_vesca FvH4_6g30900 FvH4_6g30900
malus_domestica MD09G1215200.v1.1 MD17G1197900.v1.1
prunus_persica Prupe.3G074300_v2.0.a1
pyrus_communis pycom09g13200 pycom17g20280
rosa_chinensis RchiOBHm_Chr2g0137391
rosa_laevigata RLG00000019656
rosa_multiflora Rmu_ssc0000312.1_g000014
rosa_roxburghii Rroxscaffold_2G00107080
rosa_rugosa Rorug02G0342200
rosa_samantha Rh2AG390300 Rh2BG397700 Rh2CG377600 Rh2DG413000
rosa_wichuraiana Rw2G031980

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 137
AccII CGCG 2 cut(s) 248, 383
AciI CCGC 7 cut(s) 37, 135, 209, 230, 233, 375, 738
AcsI RAATTY 1 cut(s) 99
AcuI CTGAAG 2 cut(s) 32, 708
AcvI CACGTG 1 cut(s) 592
AcyI GRCGYC 1 cut(s) 282
AfaI GTAC 2 cut(s) 326, 883
AfiI CCNNNNNNNGG 2 cut(s) 202, 754
AflII CTTAAG 1 cut(s) 485
AgsI TTSAA 2 cut(s) 584, 1143
AluBI AGCT 7 cut(s) 16, 397, 587, 710, 716, 990, 1163
AluI AGCT 7 cut(s) 16, 397, 587, 710, 716, 990, 1163
Alw26I GTCTC 3 cut(s) 66, 157, 367
Ama87I CYCGRG 1 cut(s) 333
AoxI GGCC 2 cut(s) 302, 330
ApeKI GCWGC 3 cut(s) 5, 716, 1163
ApoI RAATTY 1 cut(s) 99
ArsI GACNNNNNNTTYG 4 cut(s) 272, 304, 779, 811
Asp700I GAANNNNTTC 1 cut(s) 534
AspLEI GCGC 1 cut(s) 250
AspS9I GGNCC 4 cut(s) 75, 199, 302, 331
AsuC2I CCSGG 5 cut(s) 197, 203, 286, 317, 329
AsuHPI GGTGA 2 cut(s) 180, 404
AvaI CYCGRG 1 cut(s) 333
AvaII GGWCC 2 cut(s) 75, 199
AxyI CCTNAGG 1 cut(s) 255
BaeGI GKGCMC 1 cut(s) 910
BanII GRGCYC 2 cut(s) 978, 1127
BauI CACGAG 1 cut(s) 273
BbrPI CACGTG 1 cut(s) 592
BbsI GAAGAC 2 cut(s) 285, 1065
BbvI GCAGC 3 cut(s) 17, 703, 1150
BccI CCATC 2 cut(s) 57, 520
BceAI ACGGC 1 cut(s) 250
BcnI CCSGG 5 cut(s) 197, 203, 286, 317, 329
BcoDI GTCTC 3 cut(s) 66, 157, 367
BfaI CTAG 3 cut(s) 711, 824, 878
BfmI CTRYAG 1 cut(s) 1164
BfrI CTTAAG 1 cut(s) 485
BglI GCCNNNNNGGC 1 cut(s) 338
BisI GCNGC 6 cut(s) 6, 37, 233, 376, 717, 1164
BlsI GCNGC 6 cut(s) 7, 38, 234, 377, 718, 1165
Bme1390I CCNGG 5 cut(s) 197, 203, 286, 317, 329
Bme18I GGWCC 2 cut(s) 75, 199
BmeT110I CYCGRG 1 cut(s) 333
BmgT120I GGNCC 4 cut(s) 75, 199, 302, 331
BmiI GGNNCC 5 cut(s) 77, 201, 207, 342, 468
BmrFI CCNGG 5 cut(s) 197, 203, 286, 317, 329
BmsI GCATC 2 cut(s) 598, 688
BpiI GAAGAC 2 cut(s) 285, 1065
BpmI CTGGAG 2 cut(s) 419, 741
Bpu10I CCTNAGC 1 cut(s) 1126
BpuEI CTTGAG 1 cut(s) 1175
BpuMI CCSGG 5 cut(s) 197, 203, 286, 317, 329
BsaAI YACGTR 1 cut(s) 592
BsaHI GRCGYC 1 cut(s) 282
BsaI GGTCTC 1 cut(s) 367
BsaJI CCNNGG 4 cut(s) 27, 266, 315, 649
Bsc4I CCNNNNNNNGG 2 cut(s) 202, 754
Bse1I ACTGG 1 cut(s) 1136
Bse21I CCTNAGG 1 cut(s) 255
Bse3DI GCAATG 1 cut(s) 897
BseDI CCNNGG 4 cut(s) 27, 266, 315, 649
BseLI CCNNNNNNNGG 2 cut(s) 202, 754
BseMI GCAATG 1 cut(s) 897
BseMII CTCAG 2 cut(s) 269, 1140
BseNI ACTGG 1 cut(s) 1136
BseRI GAGGAG 8 cut(s) 8, 16, 99, 172, 175, 243, 467, 1013
BseSI GKGCMC 1 cut(s) 910
BseXI GCAGC 3 cut(s) 17, 703, 1150
BseYI CCCAGC 3 cut(s) 129, 902, 1085
BsgI GTGCAG 1 cut(s) 714
Bsh1236I CGCG 2 cut(s) 248, 383
Bsh1285I CGRYCG 1 cut(s) 144
BshFI GGCC 2 cut(s) 304, 332
BsiEI CGRYCG 1 cut(s) 144
BsiHKCI CYCGRG 1 cut(s) 333
BsiSI CCGG 6 cut(s) 197, 203, 286, 317, 329, 350
BslFI GGGAC 1 cut(s) 61
BslI CCNNNNNNNGG 2 cut(s) 202, 754
BsmAI GTCTC 3 cut(s) 66, 157, 367
BsmBI CGTCTC 2 cut(s) 66, 157
BsmFI GGGAC 1 cut(s) 61
BsnI GGCC 2 cut(s) 304, 332
Bso31I GGTCTC 1 cut(s) 367
BsoBI CYCGRG 1 cut(s) 333
Bsp1286I GDGCHC 3 cut(s) 910, 978, 1127
Bsp143I GATC 2 cut(s) 94, 141
Bsp19I CCATGG 1 cut(s) 649
BspACI CCGC 7 cut(s) 37, 135, 209, 230, 233, 375, 738
BspANI GGCC 2 cut(s) 304, 332
BspCNI CTCAG 2 cut(s) 268, 1139
BspFNI CGCG 2 cut(s) 248, 383
BspLI GGNNCC 5 cut(s) 77, 201, 207, 342, 468
BspMAI CTGCAG 1 cut(s) 1168
BspTI CTTAAG 1 cut(s) 485
BspTNI GGTCTC 1 cut(s) 367
BsrBI CCGCTC 1 cut(s) 137
BsrDI GCAATG 1 cut(s) 897
BsrI ACTGG 1 cut(s) 1136
BssECI CCNNGG 4 cut(s) 27, 266, 315, 649
BssMI GATC 2 cut(s) 94, 141
BssNI GRCGYC 1 cut(s) 282
BssSI CACGAG 1 cut(s) 273
BssT1I CCWWGG 1 cut(s) 649
Bst2BI CACGAG 1 cut(s) 273
Bst4CI ACNGT 4 cut(s) 240, 580, 886, 1149
Bst6I CTCTTC 1 cut(s) 26
BstACI GRCGYC 1 cut(s) 282
BstAFI CTTAAG 1 cut(s) 485
BstBAI YACGTR 1 cut(s) 592
BstC8I GCNNGC 5 cut(s) 34, 135, 246, 766, 1047
BstDEI CTNAG 4 cut(s) 71, 255, 845, 1126
BstDSI CCRYGG 2 cut(s) 266, 649
BstENI CCTNNNNNAGG 1 cut(s) 752
BstFNI CGCG 2 cut(s) 248, 383
BstHHI GCGC 1 cut(s) 250
BstKTI GATC 2 cut(s) 97, 144
BstMAI GTCTC 3 cut(s) 66, 157, 367
BstMBI GATC 2 cut(s) 94, 141
BstMCI CGRYCG 1 cut(s) 144
BstSCI CCNGG 5 cut(s) 195, 201, 284, 315, 327
BstSFI CTRYAG 1 cut(s) 1164
BstSLI GKGCMC 1 cut(s) 910
BstUI CGCG 2 cut(s) 248, 383
BstV1I GCAGC 3 cut(s) 17, 703, 1150
BstV2I GAAGAC 2 cut(s) 285, 1065
BstXI CCANNNNNNTGG 1 cut(s) 656
Bsu36I CCTNAGG 1 cut(s) 255
BsuRI GGCC 2 cut(s) 304, 332
BtgI CCRYGG 2 cut(s) 266, 649
BtsI GCAGTG 1 cut(s) 40
BtsIMutI CAGTG 1 cut(s) 40
Cac8I GCNNGC 5 cut(s) 34, 135, 246, 766, 1047
CfoI GCGC 1 cut(s) 250
Cfr13I GGNCC 4 cut(s) 75, 199, 302, 331
CseI GACGC 3 cut(s) 290, 389, 809
Csp6I GTAC 2 cut(s) 325, 882
CviAII CATG 3 cut(s) 637, 650, 968
CviQI GTAC 2 cut(s) 325, 882
DdeI CTNAG 4 cut(s) 71, 255, 845, 1126
DpnI GATC 2 cut(s) 96, 143
DpnII GATC 2 cut(s) 94, 141
DraI TTTAAA 1 cut(s) 1065
Eam1104I CTCTTC 1 cut(s) 26
EarI CTCTTC 1 cut(s) 26
Eco130I CCWWGG 1 cut(s) 649
Eco24I GRGCYC 2 cut(s) 978, 1127
Eco31I GGTCTC 1 cut(s) 367
Eco47I GGWCC 2 cut(s) 75, 199
Eco57I CTGAAG 2 cut(s) 32, 708
Eco72I CACGTG 1 cut(s) 592
Eco81I CCTNAGG 1 cut(s) 255
Eco88I CYCGRG 1 cut(s) 333
EcoNI CCTNNNNNAGG 1 cut(s) 752
EcoO109I RGGNCCY 1 cut(s) 75
EcoT14I CCWWGG 1 cut(s) 649
EcoT38I GRGCYC 2 cut(s) 978, 1127
ErhI CCWWGG 1 cut(s) 649
Esp3I CGTCTC 2 cut(s) 66, 157
FaeI CATG 3 cut(s) 640, 653, 971
FalI AAGNNNNNCTT 5 cut(s) 37, 551, 583, 974, 1006
FaqI GGGAC 1 cut(s) 61
FatI CATG 3 cut(s) 636, 649, 967
FauI CCCGC 1 cut(s) 142
FauNDI CATATG 1 cut(s) 1109
Fnu4HI GCNGC 6 cut(s) 6, 37, 233, 376, 717, 1164
FriOI GRGCYC 2 cut(s) 978, 1127
Fsp4HI GCNGC 6 cut(s) 6, 37, 233, 376, 717, 1164
FspBI CTAG 3 cut(s) 711, 824, 878
GlaI GCGC 1 cut(s) 249
GluI GCNGC 6 cut(s) 6, 37, 233, 376, 717, 1164
GsaI CCCAGC 3 cut(s) 133, 906, 1089
GsuI CTGGAG 2 cut(s) 419, 741
HaeIII GGCC 2 cut(s) 304, 332
HapII CCGG 6 cut(s) 197, 203, 286, 317, 329, 350
HgaI GACGC 3 cut(s) 290, 389, 809
HhaI GCGC 1 cut(s) 250
Hin1I GRCGYC 1 cut(s) 282
Hin1II CATG 3 cut(s) 640, 653, 971
Hin6I GCGC 1 cut(s) 248
HinP1I GCGC 1 cut(s) 248
HincII GTYRAC 2 cut(s) 745, 787
HindII GTYRAC 2 cut(s) 745, 787
HindIII AAGCTT 1 cut(s) 988
HinfI GANTC 4 cut(s) 260, 417, 508, 841
HpaII CCGG 6 cut(s) 197, 203, 286, 317, 329, 350
HphI GGTGA 2 cut(s) 180, 404
Hpy166II GTNNAC 4 cut(s) 270, 745, 776, 787
Hpy188I TCNGA 4 cut(s) 94, 141, 367, 980
Hpy188III TCNNGA 6 cut(s) 113, 257, 292, 429, 518, 1128
Hpy8I GTNNAC 4 cut(s) 270, 745, 776, 787
Hpy99I CGWCG 2 cut(s) 244, 383
HpyAV CCTTC 7 cut(s) 289, 315, 365, 397, 426, 493, 683
HpyCH4III ACNGT 4 cut(s) 240, 580, 886, 1149
HpyCH4IV ACGT 2 cut(s) 479, 591
HpyF3I CTNAG 4 cut(s) 71, 255, 845, 1126
HpySE526I ACGT 2 cut(s) 479, 591
Hsp92I GRCGYC 1 cut(s) 282
Hsp92II CATG 3 cut(s) 640, 653, 971
HspAI GCGC 1 cut(s) 248
Kzo9I GATC 2 cut(s) 94, 141
LmnI GCTCC 7 cut(s) 21, 50, 142, 166, 211, 346, 722
Lsp1109I GCAGC 3 cut(s) 17, 703, 1150
LweI GCATC 2 cut(s) 598, 688
MaeI CTAG 3 cut(s) 711, 824, 878
MaeII ACGT 2 cut(s) 479, 591
MaeIII GTNAC 2 cut(s) 886, 1149
MalI GATC 2 cut(s) 96, 143
MbiI CCGCTC 1 cut(s) 137
MboI GATC 2 cut(s) 94, 141
MboII GAAGA 5 cut(s) 13, 290, 365, 508, 1065
MfeI CAATTG 1 cut(s) 596
MhlI GDGCHC 3 cut(s) 910, 978, 1127
MluCI AATT 4 cut(s) 99, 534, 596, 759
MlyI GAGTC 1 cut(s) 254
MroXI GAANNNNTTC 1 cut(s) 534
MseI TTAA 4 cut(s) 123, 486, 860, 1064
MslI CAYNNNNRTG 1 cut(s) 654
MspCI CTTAAG 1 cut(s) 485
MspI CCGG 6 cut(s) 197, 203, 286, 317, 329, 350
MspR9I CCNGG 5 cut(s) 197, 203, 286, 317, 329
MunI CAATTG 1 cut(s) 596
MvnI CGCG 2 cut(s) 248, 383
NciI CCSGG 5 cut(s) 197, 203, 286, 317, 329
NcoI CCATGG 1 cut(s) 649
NdeI CATATG 1 cut(s) 1109
NdeII GATC 2 cut(s) 94, 141
NlaIII CATG 3 cut(s) 640, 653, 971
NlaIV GGNNCC 5 cut(s) 77, 201, 207, 342, 468
NmeAIII GCCGAG 1 cut(s) 8
NmuCI GTSAC 2 cut(s) 886, 1149
PcsI WCGNNNNNNNCGW 1 cut(s) 288
PdmI GAANNNNTTC 1 cut(s) 534
PfeI GAWTC 3 cut(s) 417, 508, 841
PflFI GACNNNGTC 1 cut(s) 927
PkrI GCNGC 6 cut(s) 7, 38, 234, 377, 718, 1165
Ple19I CGATCG 1 cut(s) 144
PleI GAGTC 1 cut(s) 254
PmaCI CACGTG 1 cut(s) 592
PmlI CACGTG 1 cut(s) 592
PpsI GAGTC 1 cut(s) 254
Ppu21I YACGTR 1 cut(s) 592
PpuMI RGGWCCY 1 cut(s) 75
Psp5II RGGWCCY 1 cut(s) 75
PspCI CACGTG 1 cut(s) 592
PspFI CCCAGC 3 cut(s) 129, 902, 1085
PspN4I GGNNCC 5 cut(s) 77, 201, 207, 342, 468
PspPI GGNCC 4 cut(s) 75, 199, 302, 331
PspPPI RGGWCCY 1 cut(s) 75
PstI CTGCAG 1 cut(s) 1168
PsyI GACNNNGTC 1 cut(s) 927
PvuI CGATCG 1 cut(s) 144
RsaI GTAC 2 cut(s) 326, 883
RsaNI GTAC 2 cut(s) 325, 882
RseI CAYNNNNRTG 1 cut(s) 654
SaqAI TTAA 4 cut(s) 123, 486, 860, 1064
SatI GCNGC 6 cut(s) 6, 37, 233, 376, 717, 1164
Sau3AI GATC 2 cut(s) 94, 141
Sau96I GGNCC 4 cut(s) 75, 199, 302, 331
SchI GAGTC 1 cut(s) 254
ScrFI CCNGG 5 cut(s) 197, 203, 286, 317, 329
SduI GDGCHC 3 cut(s) 910, 978, 1127
SfaNI GCATC 2 cut(s) 598, 688
SfcI CTRYAG 1 cut(s) 1164
SinI GGWCC 2 cut(s) 75, 199
SmiMI CAYNNNNRTG 1 cut(s) 654
SmlI CTYRAG 2 cut(s) 485, 1190
SmoI CTYRAG 2 cut(s) 485, 1190
Sse9I AATT 4 cut(s) 99, 534, 596, 759
SsiI CCGC 7 cut(s) 37, 135, 209, 230, 233, 375, 738
SspMI CTAG 3 cut(s) 711, 824, 878
StyD4I CCNGG 5 cut(s) 195, 201, 284, 315, 327
StyI CCWWGG 1 cut(s) 649
TaaI ACNGT 4 cut(s) 240, 580, 886, 1149
TaiI ACGT 2 cut(s) 482, 594
TaqI TCGA 4 cut(s) 144, 420, 428, 538
TaqII GACCGA 1 cut(s) 885
TasI AATT 4 cut(s) 99, 534, 596, 759
TauI GCSGC 3 cut(s) 39, 235, 378
TfiI GAWTC 3 cut(s) 417, 508, 841
Tru1I TTAA 4 cut(s) 123, 486, 860, 1064
Tru9I TTAA 4 cut(s) 123, 486, 860, 1064
TscAI CASTG 1 cut(s) 47
TseFI GTSAC 2 cut(s) 886, 1149
TseI GCWGC 3 cut(s) 5, 716, 1163
Tsp45I GTSAC 2 cut(s) 886, 1149
TspDTI ATGAA 4 cut(s) 588, 720, 822, 956
TspGWI ACGGA 1 cut(s) 333
TspRI CASTG 1 cut(s) 47
Tth111I GACNNNGTC 1 cut(s) 927
Vha464I CTTAAG 1 cut(s) 485
VpaK11BI GGWCC 2 cut(s) 75, 199
XagI CCTNNNNNAGG 1 cut(s) 752
XapI RAATTY 1 cut(s) 99
XmnI GAANNNNTTC 1 cut(s) 534
XspI CTAG 3 cut(s) 711, 824, 878
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.