Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0016679

Physical Location & Seq

Genomic Coordinates Reverse (-)

30350539 .. 30352208

Gene Structure 1670 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G80760.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGGATCATGAGGAAATTCCATCCACGCCCTCAACGCCGGCGACAACCCCGGGGACTCCAGGAGCGCCGCTCTTTGGAGGATTCGAAGGGAAGAGGAATGGACACAATGGTAGATACACACCAAAGTCACTTCTCAAAAGCTGCAAATGTTTCAGTGTTGACAATGAATGGGCTCTTGAAGATGGAAGACTCCCTCCGGTCACTTGCTCTCTCCCTCCCCCTAACGTTTCCCTCTACCGCAAGTTGGGAGCAGAGTTTGTTGGGACATTGATCCTGATATTCGCCGGAACAGCGACGGCGATCGTGAACCAGAAGACAGATGGAGCTGAGACGCTTATTGGTTGCGCCGCCTCGGCTGGTTTGGCGGTTATGATCGTTATATTATCGACCGGTCACATCTCCGGGGCACATCTCAATCCGGCTGTAACCATTGCCTTTGCTGCTCTCAAACACTTCCCTTGGAAACACGTGCCGGTGTATATCGGAGCTCAGGTGATGGCCTCCGTGAGTGCGGCGTTTGCACTGAAAGCAGTGTTTGAACCAACGATGAGCGGTGGCGTGACGGTGCCGACGGTGGGTCTCAGCCAAGCTTTCGCCTTGGAATTCATTATCAGCTTCAACCTCATGTTCGTTGTCACAGCCGTAGCCACCGACACGAGAGCTGTGGGAGAGTTGGCGGGAATTGCCGTAGGAGCAACGGTCATGCTTAACATACTTATAGCTGGACCTGCAACTTCTGCTTCGATGAACCCTGTAAGAACACTGGGTCCAGCCATTGCAGCAAACAATTACAGAGCTATTTGGGTTTACCTCACTGCCCCCATTCTTGGAGCGTTAATCGGAGCAGGTACATACACAATTGTCAAGTTGCCAGAGGAAGATGAAGCACCCAAAGAGAGGAGGAGCTTCAGAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006820 GO:0006855 GO:0007154 GO:0008150 GO:0008509 GO:0008643 GO:0009605 GO:0009987 GO:0009991 GO:0010036 GO:0015075 GO:0015103 GO:0015144 GO:0015166 GO:0015168 GO:0015204 GO:0015238 GO:0015318 GO:0015698 GO:0015791 GO:0015793 GO:0015840 GO:0015850 GO:0015893 GO:0016020 GO:0016021 GO:0019755 GO:0022804 GO:0022857 GO:0031224 GO:0031226 GO:0031667 GO:0031668 GO:0031669 GO:0034219 GO:0034220 GO:0035445 GO:0042221 GO:0042493 GO:0042886 GO:0042887 GO:0044425 GO:0044459 GO:0044464 GO:0046713 GO:0046715 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0070887 GO:0071496 GO:0071702 GO:0071705 GO:0071918 GO:0071944 GO:0080029 GO:0098656 GO:0098660 GO:0098661 GO:1901618

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

305

Amino Acids

31.84

Weight (kDa)

8.33

Isoelectric Point (pI)

29.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIP	PF00230	76 - 285	1.6e-50	Major intrinsic protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0016679)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80760
fragaria_vesca	FvH4_6g28790
malus_domestica	MD17G1221800.v1.1
prunus_persica	Prupe.3G096600_v2.0.a1
pyrus_communis	pycom17g22580
rosa_chinensis	RchiOBHm_Chr2g0133211
rosa_laevigata	RLG00000019321
rosa_multiflora	Rmu_sc0000886.1_g000005
rosa_roxburghii	Rroxscaffold_2G00111300
rosa_rugosa	Rorug02G0310800
rosa_samantha	Rh2BG368900 Rh2CG346500 Rh2DG385900
rosa_wichuraiana	Rw2G029520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	736, 836
AccB1I	GGYRCC	1 cut(s)	565
AccBSI	CCGCTC	2 cut(s)	70, 552
AciI	CCGC	7 cut(s)	68, 238, 348, 365, 512, 552, 677
AclI	AACGTT	1 cut(s)	225
AclWI	GGATC	2 cut(s)	12, 265
AcsI	RAATTY	2 cut(s)	15, 602
AcuI	CTGAAG	1 cut(s)	892
AcvI	CACGTG	1 cut(s)	469
AfaI	GTAC	1 cut(s)	850
AfiI	CCNNNNNNNGG	5 cut(s)	74, 244, 575, 827, 897
AflIII	ACRYGT	1 cut(s)	466
AgeI	ACCGGT	1 cut(s)	389
AgsI	TTSAA	3 cut(s)	179, 539, 619
AhdI	GACNNNNNGTC	1 cut(s)	576
AjnI	CCWGG	1 cut(s)	58
AloI	GAACNNNNNNTCC	2 cut(s)	751, 783
AluBI	AGCT	9 cut(s)	141, 326, 488, 590, 615, 662, 722, 797, 906
AluI	AGCT	9 cut(s)	141, 326, 488, 590, 615, 662, 722, 797, 906
Alw21I	GWGCWC	1 cut(s)	490
Alw26I	GTCTC	2 cut(s)	323, 584
AlwI	GGATC	2 cut(s)	12, 265
Ama87I	CYCGRG	1 cut(s)	49
AoxI	GGCC	1 cut(s)	498
ApeKI	GCWGC	3 cut(s)	141, 440, 779
ApoI	RAATTY	2 cut(s)	15, 602
AsiGI	ACCGGT	1 cut(s)	389
AspLEI	GCGC	2 cut(s)	67, 347
AspS9I	GGNCC	2 cut(s)	725, 767
AsuC2I	CCSGG	3 cut(s)	50, 51, 403
AsuHPI	GGTGA	1 cut(s)	505
AsuII	TTCGAA	1 cut(s)	84
AvaI	CYCGRG	1 cut(s)	49
AvaII	GGWCC	2 cut(s)	725, 767
BaeGI	GKGCMC	1 cut(s)	409
BanI	GGYRCC	1 cut(s)	565
BanII	GRGCYC	2 cut(s)	175, 490
BauI	CACGAG	1 cut(s)	655
BbrPI	CACGTG	1 cut(s)	469
BbsI	GAAGAC	2 cut(s)	193, 320
Bbv12I	GWGCWC	1 cut(s)	490
BbvI	GCAGC	3 cut(s)	128, 427, 791
BccI	CCATC	4 cut(s)	28, 176, 314, 490
BceAI	ACGGC	3 cut(s)	312, 626, 671
BciT130I	CCWGG	1 cut(s)	60
BcnI	CCSGG	3 cut(s)	50, 51, 403
BcoDI	GTCTC	2 cut(s)	323, 584
BfoI	RGCGCY	1 cut(s)	68
BfuAI	ACCTGC	2 cut(s)	736, 836
BglI	GCCNNNNNGGC	1 cut(s)	353
BisI	GCNGC	6 cut(s)	68, 142, 348, 441, 513, 780
BlsI	GCNGC	6 cut(s)	69, 143, 349, 442, 514, 781
Bme1390I	CCNGG	4 cut(s)	50, 51, 60, 403
Bme18I	GGWCC	2 cut(s)	725, 767
BmeRI	GACNNNNNGTC	1 cut(s)	576
BmeT110I	CYCGRG	1 cut(s)	49
BmgT120I	GGNCC	2 cut(s)	725, 767
BmiI	GGNNCC	2 cut(s)	567, 768
BmrFI	CCNGG	4 cut(s)	50, 51, 60, 403
BmrI	ACTGGG	1 cut(s)	773
BmuI	ACTGGG	1 cut(s)	773
BpiI	GAAGAC	2 cut(s)	193, 320
BplI	GAGNNNNNCTC	2 cut(s)	54, 86
BpmI	CTGGAG	1 cut(s)	42
Bpu10I	CCTNAGC	1 cut(s)	489
Bpu14I	TTCGAA	1 cut(s)	84
BpuMI	CCSGG	3 cut(s)	50, 51, 403
BsaAI	YACGTR	1 cut(s)	469
BsaI	GGTCTC	1 cut(s)	584
BsaJI	CCNNGG	7 cut(s)	48, 49, 50, 351, 402, 458, 597
BsaWI	WCCGGW	2 cut(s)	196, 389
BsaXI	ACNNNNNCTCC	4 cut(s)	477, 507, 684, 714
Bsc4I	CCNNNNNNNGG	5 cut(s)	74, 244, 575, 827, 897
Bse118I	RCCGGY	3 cut(s)	37, 389, 472
Bse1I	ACTGG	1 cut(s)	768
Bse3DI	GCAATG	2 cut(s)	429, 774
BseBI	CCWGG	1 cut(s)	60
BseDI	CCNNGG	7 cut(s)	48, 49, 50, 351, 402, 458, 597
BseGI	GGATG	1 cut(s)	20
BseLI	CCNNNNNNNGG	5 cut(s)	74, 244, 575, 827, 897
BseMI	GCAATG	2 cut(s)	429, 774
BseMII	CTCAG	3 cut(s)	318, 503, 595
BseNI	ACTGG	1 cut(s)	768
BseRI	GAGGAG	2 cut(s)	913, 916
BseSI	GKGCMC	1 cut(s)	409
BseXI	GCAGC	3 cut(s)	128, 427, 791
Bsh1285I	CGRYCG	2 cut(s)	303, 390
BshFI	GGCC	1 cut(s)	500
BshNI	GGYRCC	1 cut(s)	565
BshTI	ACCGGT	1 cut(s)	389
BsiEI	CGRYCG	2 cut(s)	303, 390
BsiHKAI	GWGCWC	1 cut(s)	490
BsiHKCI	CYCGRG	1 cut(s)	49
BsiSI	CCGG	8 cut(s)	38, 50, 197, 285, 390, 402, 419, 473
BslFI	GGGAC	2 cut(s)	67, 277
BslI	CCNNNNNNNGG	5 cut(s)	74, 244, 575, 827, 897
BsmAI	GTCTC	2 cut(s)	323, 584
BsmBI	CGTCTC	1 cut(s)	323
BsmFI	GGGAC	2 cut(s)	67, 277
BsnI	GGCC	1 cut(s)	500
Bso31I	GGTCTC	1 cut(s)	584
BsoBI	CYCGRG	1 cut(s)	49
Bsp119I	TTCGAA	1 cut(s)	84
Bsp1286I	GDGCHC	3 cut(s)	175, 409, 490
Bsp143I	GATC	4 cut(s)	4, 270, 300, 372
BspACI	CCGC	7 cut(s)	68, 238, 348, 365, 512, 552, 677
BspANI	GGCC	1 cut(s)	500
BspCNI	CTCAG	3 cut(s)	319, 502, 594
BspHI	TCATGA	1 cut(s)	7
BspLI	GGNNCC	2 cut(s)	567, 768
BspMI	ACCTGC	2 cut(s)	736, 836
BspPI	GGATC	2 cut(s)	12, 265
BspT104I	TTCGAA	1 cut(s)	84
BspT107I	GGYRCC	1 cut(s)	565
BspTNI	GGTCTC	1 cut(s)	584
BsrBI	CCGCTC	2 cut(s)	70, 552
BsrDI	GCAATG	2 cut(s)	429, 774
BsrFI	RCCGGY	3 cut(s)	37, 389, 472
BsrI	ACTGG	1 cut(s)	768
BssAI	RCCGGY	3 cut(s)	37, 389, 472
BssECI	CCNNGG	7 cut(s)	48, 49, 50, 351, 402, 458, 597
BssMI	GATC	4 cut(s)	4, 270, 300, 372
BssSI	CACGAG	1 cut(s)	655
BssT1I	CCWWGG	2 cut(s)	458, 597
Bst2BI	CACGAG	1 cut(s)	655
Bst2UI	CCWGG	1 cut(s)	60
Bst4CI	ACNGT	3 cut(s)	565, 574, 700
Bst6I	CTCTTC	1 cut(s)	86
BstAPI	GCANNNNNTGC	1 cut(s)	737
BstBAI	YACGTR	1 cut(s)	469
BstBI	TTCGAA	1 cut(s)	84
BstC8I	GCNNGC	1 cut(s)	39
BstDEI	CTNAG	3 cut(s)	327, 489, 581
BstF5I	GGATG	1 cut(s)	20
BstH2I	RGCGCY	1 cut(s)	68
BstHHI	GCGC	2 cut(s)	67, 347
BstKTI	GATC	4 cut(s)	7, 273, 303, 375
BstMAI	GTCTC	2 cut(s)	323, 584
BstMBI	GATC	4 cut(s)	4, 270, 300, 372
BstMCI	CGRYCG	2 cut(s)	303, 390
BstNI	CCWGG	1 cut(s)	60
BstSCI	CCNGG	4 cut(s)	48, 49, 58, 401
BstSLI	GKGCMC	1 cut(s)	409
BstV1I	GCAGC	3 cut(s)	128, 427, 791
BstV2I	GAAGAC	2 cut(s)	193, 320
BsuRI	GGCC	1 cut(s)	500
BtsCI	GGATG	1 cut(s)	20
BtsI	GCAGTG	2 cut(s)	537, 813
BtsIMutI	CAGTG	5 cut(s)	160, 521, 537, 761, 813
BveI	ACCTGC	2 cut(s)	736, 836
Cac8I	GCNNGC	1 cut(s)	39
CciI	TCATGA	1 cut(s)	7
CfoI	GCGC	2 cut(s)	67, 347
Cfr10I	RCCGGY	3 cut(s)	37, 389, 472
Cfr13I	GGNCC	2 cut(s)	725, 767
Cfr9I	CCCGGG	1 cut(s)	49
CseI	GACGC	1 cut(s)	340
Csp6I	GTAC	1 cut(s)	849
CspAI	ACCGGT	1 cut(s)	389
CviAII	CATG	3 cut(s)	8, 625, 703
CviQI	GTAC	1 cut(s)	849
DdeI	CTNAG	3 cut(s)	327, 489, 581
DpnI	GATC	4 cut(s)	6, 272, 302, 374
DpnII	GATC	4 cut(s)	4, 270, 300, 372
DriI	GACNNNNNGTC	1 cut(s)	576
Eam1104I	CTCTTC	1 cut(s)	86
Eam1105I	GACNNNNNGTC	1 cut(s)	576
EarI	CTCTTC	1 cut(s)	86
Ecl136II	GAGCTC	1 cut(s)	488
Eco130I	CCWWGG	2 cut(s)	458, 597
Eco24I	GRGCYC	2 cut(s)	175, 490
Eco31I	GGTCTC	1 cut(s)	584
Eco47I	GGWCC	2 cut(s)	725, 767
Eco53kI	GAGCTC	1 cut(s)	488
Eco57I	CTGAAG	1 cut(s)	892
Eco72I	CACGTG	1 cut(s)	469
Eco88I	CYCGRG	1 cut(s)	49
EcoICRI	GAGCTC	1 cut(s)	488
EcoRI	GAATTC	1 cut(s)	602
EcoRII	CCWGG	1 cut(s)	58
EcoT14I	CCWWGG	2 cut(s)	458, 597
EcoT38I	GRGCYC	2 cut(s)	175, 490
ErhI	CCWWGG	2 cut(s)	458, 597
Esp3I	CGTCTC	1 cut(s)	323
FaeI	CATG	3 cut(s)	11, 628, 706
FaiI	YATR	9 cut(s)	9, 371, 380, 480, 626, 704, 713, 719, 853
FaqI	GGGAC	2 cut(s)	67, 277
FatI	CATG	3 cut(s)	7, 624, 702
FauI	CCCGC	1 cut(s)	670
Fnu4HI	GCNGC	6 cut(s)	68, 142, 348, 441, 513, 780
FokI	GGATG	1 cut(s)	7
FriOI	GRGCYC	2 cut(s)	175, 490
Fsp4HI	GCNGC	6 cut(s)	68, 142, 348, 441, 513, 780
GlaI	GCGC	2 cut(s)	66, 346
GluI	GCNGC	6 cut(s)	68, 142, 348, 441, 513, 780
GsuI	CTGGAG	1 cut(s)	42
HaeII	RGCGCY	1 cut(s)	68
HaeIII	GGCC	1 cut(s)	500
HapII	CCGG	8 cut(s)	38, 50, 197, 285, 390, 402, 419, 473
HgaI	GACGC	1 cut(s)	340
HhaI	GCGC	2 cut(s)	67, 347
Hin1II	CATG	3 cut(s)	11, 628, 706
Hin6I	GCGC	2 cut(s)	65, 345
HinP1I	GCGC	2 cut(s)	65, 345
HincII	GTYRAC	1 cut(s)	160
HindII	GTYRAC	1 cut(s)	160
HindIII	AAGCTT	1 cut(s)	588
HinfI	GANTC	3 cut(s)	55, 81, 189
HpaII	CCGG	8 cut(s)	38, 50, 197, 285, 390, 402, 419, 473
HphI	GGTGA	1 cut(s)	505
Hpy166II	GTNNAC	3 cut(s)	160, 307, 808
Hpy188I	TCNGA	3 cut(s)	485, 842, 911
Hpy188III	TCNNGA	4 cut(s)	8, 176, 274, 304
Hpy8I	GTNNAC	3 cut(s)	160, 307, 808
Hpy99I	CGWCG	2 cut(s)	298, 574
HpyAV	CCTTC	1 cut(s)	80
HpyCH4III	ACNGT	3 cut(s)	565, 574, 700
HpyCH4IV	ACGT	2 cut(s)	225, 468
HpyCH4V	TGCA	4 cut(s)	144, 521, 731, 779
HpyF3I	CTNAG	3 cut(s)	327, 489, 581
HpySE526I	ACGT	2 cut(s)	225, 468
Hsp92II	CATG	3 cut(s)	11, 628, 706
HspAI	GCGC	2 cut(s)	65, 345
KroI	GCCGGC	1 cut(s)	37
KroNI	GCCGGC	1 cut(s)	39
Kzo9I	GATC	4 cut(s)	4, 270, 300, 372
LmnI	GCTCC	8 cut(s)	62, 248, 323, 485, 692, 830, 842, 903
Lsp1109I	GCAGC	3 cut(s)	128, 427, 791
MaeII	ACGT	2 cut(s)	225, 468
MaeIII	GTNAC	6 cut(s)	126, 199, 392, 424, 559, 634
MalI	GATC	4 cut(s)	6, 272, 302, 374
MbiI	CCGCTC	2 cut(s)	70, 552
MboI	GATC	4 cut(s)	4, 270, 300, 372
MboII	GAAGA	5 cut(s)	103, 191, 198, 325, 890
MfeI	CAATTG	1 cut(s)	858
MhlI	GDGCHC	3 cut(s)	175, 409, 490
MluCI	AATT	5 cut(s)	15, 602, 681, 787, 858
MlyI	GAGTC	2 cut(s)	49, 183
MreI	CGCCGGCG	1 cut(s)	37
MroNI	GCCGGC	1 cut(s)	37
MseI	TTAA	2 cut(s)	708, 836
MspI	CCGG	8 cut(s)	38, 50, 197, 285, 390, 402, 419, 473
MspR9I	CCNGG	4 cut(s)	50, 51, 60, 403
MunI	CAATTG	1 cut(s)	858
MvaI	CCWGG	1 cut(s)	60
NaeI	GCCGGC	1 cut(s)	39
NciI	CCSGG	3 cut(s)	50, 51, 403
NdeII	GATC	4 cut(s)	4, 270, 300, 372
NgoMIV	GCCGGC	1 cut(s)	37
NlaIII	CATG	3 cut(s)	11, 628, 706
NlaIV	GGNNCC	2 cut(s)	567, 768
NmeAIII	GCCGAG	1 cut(s)	332
NmuCI	GTSAC	5 cut(s)	126, 199, 392, 559, 634
NspV	TTCGAA	1 cut(s)	84
PagI	TCATGA	1 cut(s)	7
PdiI	GCCGGC	1 cut(s)	39
PfeI	GAWTC	1 cut(s)	81
PfoI	TCCNGGA	1 cut(s)	58
PinAI	ACCGGT	1 cut(s)	389
PkrI	GCNGC	6 cut(s)	69, 143, 349, 442, 514, 781
Ple19I	CGATCG	1 cut(s)	303
PleI	GAGTC	2 cut(s)	49, 183
PmaCI	CACGTG	1 cut(s)	469
PmlI	CACGTG	1 cut(s)	469
PpsI	GAGTC	2 cut(s)	49, 183
Ppu21I	YACGTR	1 cut(s)	469
Psp124BI	GAGCTC	1 cut(s)	490
Psp1406I	AACGTT	1 cut(s)	225
Psp6I	CCWGG	1 cut(s)	58
PspCI	CACGTG	1 cut(s)	469
PspGI	CCWGG	1 cut(s)	58
PspN4I	GGNNCC	2 cut(s)	567, 768
PspPI	GGNCC	2 cut(s)	725, 767
PvuI	CGATCG	1 cut(s)	303
RsaI	GTAC	1 cut(s)	850
RsaNI	GTAC	1 cut(s)	849
SacI	GAGCTC	1 cut(s)	490
SaqAI	TTAA	2 cut(s)	708, 836
SatI	GCNGC	6 cut(s)	68, 142, 348, 441, 513, 780
Sau3AI	GATC	4 cut(s)	4, 270, 300, 372
Sau96I	GGNCC	2 cut(s)	725, 767
SchI	GAGTC	2 cut(s)	49, 183
ScrFI	CCNGG	4 cut(s)	50, 51, 60, 403
SduI	GDGCHC	3 cut(s)	175, 409, 490
SfuI	TTCGAA	1 cut(s)	84
SgrAI	CRCCGGYG	1 cut(s)	37
SinI	GGWCC	2 cut(s)	725, 767
SmaI	CCCGGG	1 cut(s)	51
Sse9I	AATT	5 cut(s)	15, 602, 681, 787, 858
SsiI	CCGC	7 cut(s)	68, 238, 348, 365, 512, 552, 677
SstI	GAGCTC	1 cut(s)	490
StyD4I	CCNGG	4 cut(s)	48, 49, 58, 401
StyI	CCWWGG	2 cut(s)	458, 597
TaaI	ACNGT	3 cut(s)	565, 574, 700
TaiI	ACGT	2 cut(s)	228, 471
TaqI	TCGA	3 cut(s)	84, 386, 743
TasI	AATT	5 cut(s)	15, 602, 681, 787, 858
TauI	GCSGC	3 cut(s)	70, 350, 515
TfiI	GAWTC	1 cut(s)	81
Tru1I	TTAA	2 cut(s)	708, 836
Tru9I	TTAA	2 cut(s)	708, 836
TscAI	CASTG	5 cut(s)	160, 528, 537, 768, 820
TseFI	GTSAC	5 cut(s)	126, 199, 392, 559, 634
TseI	GCWGC	3 cut(s)	141, 440, 779
Tsp45I	GTSAC	5 cut(s)	126, 199, 392, 559, 634
TspDTI	ATGAA	4 cut(s)	180, 595, 761, 897
TspGWI	ACGGA	1 cut(s)	493
TspMI	CCCGGG	1 cut(s)	49
TspRI	CASTG	5 cut(s)	160, 528, 537, 768, 820
VpaK11BI	GGWCC	2 cut(s)	725, 767
XapI	RAATTY	2 cut(s)	15, 602
XcmI	CCANNNNNNNNNTGG	1 cut(s)	317
XmaI	CCCGGG	1 cut(s)	49

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.