Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0016679

Physical Location & Seq

Genomic Coordinates Forward (+)

50263861 .. 50266174

Gene Structure 2314 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000019321

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

ATGCAAGAGTCTCTGCAATGTCCCACCGTCCACAATTCCTCATCTCCAGCAGTTTCAACCACTTACTTCCTTCCCCACTTTTCTCCTCGGGATTCTCCAGTAATGGACAACAACAATGGCAATGAGGAAGTTCCCTCAGCTCCTTCAACTCCAGTAACACCAGGCACTCCTGGTGCTCCTCTCTTTGGTGGGTTCAAGCCAGATCACAGATCAAGTGGGATTGGTAGGAAATCACTTCTCAAGAGCTGCAGCAAGTGCTTTACTGTTGATGATTGGGCTTTGGAAGGAGCATTGCCTAGAGCTTTCTCTGCACTACCACCCTCTCCTGTCTCACTTGCAAGAAAGGTGGGAGCTGAATTCCTAGGCACTTTCATACTGATCTTTGCTGGGACAGCAACAGCCATTGTGAACCAAAAGACTGAAGGCACTGAAACCCTTCTAGGCCTTGCAGCCTCCACTGGACTCGCTGTTATGATTGTGATTTTATCGACAGGTCACATCTCTGGAGCTCATCTGAACCCTGCTGTCACCATTGCCTTTGCTGCACTCAAGCACTTCTCATGGAAACATGTACCGGTGTACATCGGAGCACAAGTGTTGGCATCTCTCTGTTCTGCGTTTGCCTTGAAGGTGATTTTTCACCCCATAATGGGGGGTGGAGTTACAGTTCCTTCAGGAAGTTATGGTCAGGCTTTTGCTCTGGAGTTCATCATCAGCTTCAACCTCATGTTTGTGGTCACTGCTGTAGCCACCGACACTAGAGCTGTTGGGGAATTGGCGGGAATCGCTGTGGGAGCAACTGTCATGCTTAACATACTCATAGCTGGGGAGACAACAGGAGCTTCAATGAACCCTGTGAGAACATTAGGACCAGCCATAGCTGCAAACAACTTCAAAGCCATATGGGTCTACTTCACCGCACCAATTCTAGGGGCACTCTGCGGGGCGGGAACCTACACAGCAGTCAAGCTGCCCGAGGAAGAAGGTGAAAATCATGAAAAGCCTTTGACAAGAAGCTTCAGAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006820 GO:0006855 GO:0007154 GO:0008150 GO:0008509 GO:0008643 GO:0009605 GO:0009987 GO:0009991 GO:0010036 GO:0015075 GO:0015103 GO:0015144 GO:0015166 GO:0015168 GO:0015204 GO:0015238 GO:0015318 GO:0015698 GO:0015791 GO:0015793 GO:0015840 GO:0015850 GO:0015893 GO:0016020 GO:0016021 GO:0019755 GO:0022804 GO:0022857 GO:0031224 GO:0031226 GO:0031667 GO:0031668 GO:0031669 GO:0034219 GO:0034220 GO:0035445 GO:0042221 GO:0042493 GO:0042886 GO:0042887 GO:0044425 GO:0044459 GO:0044464 GO:0046713 GO:0046715 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0070887 GO:0071496 GO:0071702 GO:0071705 GO:0071918 GO:0071944 GO:0080029 GO:0098656 GO:0098660 GO:0098661 GO:1901618

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

343

Amino Acids

35.7

Weight (kDa)

7.71

Isoelectric Point (pI)

32.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIP	PF00230	110 - 319	1.8e-51	Major intrinsic protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0016679)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80760
fragaria_vesca	FvH4_6g28790
malus_domestica	MD17G1221800.v1.1
prunus_persica	Prupe.3G096600_v2.0.a1
pyrus_communis	pycom17g22580
rosa_chinensis	RchiOBHm_Chr2g0133211
rosa_laevigata	RLG00000019321
rosa_multiflora	Rmu_sc0000886.1_g000005
rosa_roxburghii	Rroxscaffold_2G00111300
rosa_rugosa	Rorug02G0310800
rosa_samantha	Rh2BG368900 Rh2CG346500 Rh2DG385900
rosa_wichuraiana	Rw2G029520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	909
AciI	CCGC	4 cut(s)	779, 918, 942, 947
AcsI	RAATTY	1 cut(s)	356
AcuI	CTGAAG	3 cut(s)	441, 657, 1003
AfaI	GTAC	2 cut(s)	573, 581
AfiI	CCNNNNNNNGG	5 cut(s)	185, 649, 650, 651, 929
AflIII	ACRYGT	1 cut(s)	568
AgeI	ACCGGT	1 cut(s)	574
AgsI	TTSAA	7 cut(s)	57, 147, 196, 628, 721, 846, 895
AjnI	CCWGG	2 cut(s)	160, 169
AloI	GAACNNNNNNTCC	2 cut(s)	651, 683
Alw21I	GWGCWC	3 cut(s)	178, 511, 592
Alw26I	GTCTC	3 cut(s)	15, 334, 824
Ama87I	CYCGRG	2 cut(s)	87, 974
AoxI	GGCC	1 cut(s)	442
ApeKI	GCWGC	6 cut(s)	246, 249, 449, 542, 881, 970
ApoI	RAATTY	1 cut(s)	356
AsiGI	ACCGGT	1 cut(s)	574
Asp700I	GAANNNNTTC	1 cut(s)	435
AspA2I	CCTAGG	1 cut(s)	361
AspS9I	GGNCC	1 cut(s)	869
AsuHPI	GGTGA	5 cut(s)	520, 632, 643, 907, 998
AvaI	CYCGRG	2 cut(s)	87, 974
AvaII	GGWCC	1 cut(s)	869
AvrII	CCTAGG	1 cut(s)	361
BaeGI	GKGCMC	1 cut(s)	937
BanII	GRGCYC	1 cut(s)	511
Bbv12I	GWGCWC	3 cut(s)	178, 511, 592
BbvCI	CCTCAGC	1 cut(s)	136
BbvI	GCAGC	6 cut(s)	233, 261, 461, 529, 868, 957
BciT130I	CCWGG	2 cut(s)	162, 171
BcoDI	GTCTC	3 cut(s)	15, 334, 824
BfaI	CTAG	5 cut(s)	297, 362, 440, 759, 929
BfmI	CTRYAG	2 cut(s)	247, 744
BisI	GCNGC	6 cut(s)	247, 250, 450, 543, 882, 971
BlnI	CCTAGG	1 cut(s)	361
BlsI	GCNGC	6 cut(s)	248, 251, 451, 544, 883, 972
Bme1390I	CCNGG	2 cut(s)	162, 171
Bme18I	GGWCC	1 cut(s)	869
BmeT110I	CYCGRG	2 cut(s)	87, 974
BmgT120I	GGNCC	1 cut(s)	869
BmiI	GGNNCC	1 cut(s)	952
BmrFI	CCNGG	2 cut(s)	162, 171
BmsI	GCATC	1 cut(s)	611
BpmI	CTGGAG	5 cut(s)	30, 81, 135, 525, 722
Bpu10I	CCTNAGC	1 cut(s)	136
BpuEI	CTTGAG	2 cut(s)	224, 533
BsaJI	CCNNGG	3 cut(s)	86, 361, 975
BsaWI	WCCGGW	1 cut(s)	574
BsaXI	ACNNNNNCTCC	6 cut(s)	579, 609, 651, 681, 786, 816
Bsc4I	CCNNNNNNNGG	5 cut(s)	185, 649, 650, 651, 929
Bse118I	RCCGGY	1 cut(s)	574
Bse1I	ACTGG	3 cut(s)	98, 152, 463
Bse3DI	GCAATG	4 cut(s)	23, 127, 290, 531
BseBI	CCWGG	2 cut(s)	162, 171
BseDI	CCNNGG	3 cut(s)	86, 361, 975
BseLI	CCNNNNNNNGG	5 cut(s)	185, 649, 650, 651, 929
BseMI	GCAATG	4 cut(s)	23, 127, 290, 531
BseMII	CTCAG	1 cut(s)	150
BseNI	ACTGG	3 cut(s)	98, 152, 463
BseRI	GAGGAG	2 cut(s)	75, 168
BseSI	GKGCMC	1 cut(s)	937
BseXI	GCAGC	6 cut(s)	233, 261, 461, 529, 868, 957
BseYI	CCCAGC	2 cut(s)	386, 824
BsgI	GTGCAG	2 cut(s)	294, 528
BshFI	GGCC	1 cut(s)	444
BshTI	ACCGGT	1 cut(s)	574
BsiHKAI	GWGCWC	3 cut(s)	178, 511, 592
BsiHKCI	CYCGRG	2 cut(s)	87, 974
BsiSI	CCGG	1 cut(s)	575
BslFI	GGGAC	2 cut(s)	6, 403
BslI	CCNNNNNNNGG	5 cut(s)	185, 649, 650, 651, 929
BsmAI	GTCTC	3 cut(s)	15, 334, 824
BsmFI	GGGAC	2 cut(s)	6, 403
BsnI	GGCC	1 cut(s)	444
BsoBI	CYCGRG	2 cut(s)	87, 974
Bsp1286I	GDGCHC	4 cut(s)	178, 511, 592, 937
Bsp1407I	TGTACA	1 cut(s)	579
Bsp143I	GATC	3 cut(s)	202, 209, 378
BspACI	CCGC	4 cut(s)	779, 918, 942, 947
BspANI	GGCC	1 cut(s)	444
BspCNI	CTCAG	1 cut(s)	149
BspHI	TCATGA	1 cut(s)	994
BspLI	GGNNCC	1 cut(s)	952
BspMAI	CTGCAG	1 cut(s)	251
BsrDI	GCAATG	4 cut(s)	23, 127, 290, 531
BsrFI	RCCGGY	1 cut(s)	574
BsrGI	TGTACA	1 cut(s)	579
BsrI	ACTGG	3 cut(s)	98, 152, 463
BssAI	RCCGGY	1 cut(s)	574
BssECI	CCNNGG	3 cut(s)	86, 361, 975
BssMI	GATC	3 cut(s)	202, 209, 378
BssT1I	CCWWGG	1 cut(s)	361
Bst2UI	CCWGG	2 cut(s)	162, 171
Bst4CI	ACNGT	4 cut(s)	28, 265, 667, 802
BstAPI	GCANNNNNTGC	1 cut(s)	255
BstAUI	TGTACA	1 cut(s)	579
BstDEI	CTNAG	1 cut(s)	136
BstKTI	GATC	3 cut(s)	205, 212, 381
BstMAI	GTCTC	3 cut(s)	15, 334, 824
BstMBI	GATC	3 cut(s)	202, 209, 378
BstMWI	GCNNNNNNNGC	7 cut(s)	255, 308, 392, 542, 785, 794, 881
BstNI	CCWGG	2 cut(s)	162, 171
BstNSI	RCATGY	1 cut(s)	572
BstSCI	CCNGG	2 cut(s)	160, 169
BstSFI	CTRYAG	2 cut(s)	247, 744
BstSLI	GKGCMC	1 cut(s)	937
BstV1I	GCAGC	6 cut(s)	233, 261, 461, 529, 868, 957
BsuRI	GGCC	1 cut(s)	444
BtsI	GCAGTG	1 cut(s)	738
BtsIMutI	CAGTG	3 cut(s)	426, 456, 738
CciI	TCATGA	1 cut(s)	994
Cfr10I	RCCGGY	1 cut(s)	574
Cfr13I	GGNCC	1 cut(s)	869
Csp6I	GTAC	2 cut(s)	572, 580
CspAI	ACCGGT	1 cut(s)	574
CspCI	CAANNNNNGTGG	2 cut(s)	327, 362
CviAII	CATG	5 cut(s)	561, 569, 727, 805, 995
CviQI	GTAC	2 cut(s)	572, 580
DdeI	CTNAG	1 cut(s)	136
DpnI	GATC	3 cut(s)	204, 211, 380
DpnII	GATC	3 cut(s)	202, 209, 378
Ecl136II	GAGCTC	1 cut(s)	509
Eco130I	CCWWGG	1 cut(s)	361
Eco147I	AGGCCT	1 cut(s)	444
Eco24I	GRGCYC	1 cut(s)	511
Eco47I	GGWCC	1 cut(s)	869
Eco53kI	GAGCTC	1 cut(s)	509
Eco57I	CTGAAG	3 cut(s)	441, 657, 1003
Eco88I	CYCGRG	2 cut(s)	87, 974
EcoICRI	GAGCTC	1 cut(s)	509
EcoRI	GAATTC	1 cut(s)	356
EcoRII	CCWGG	2 cut(s)	160, 169
EcoT14I	CCWWGG	1 cut(s)	361
EcoT38I	GRGCYC	1 cut(s)	511
ErhI	CCWWGG	1 cut(s)	361
FaeI	CATG	5 cut(s)	564, 572, 730, 808, 998
FaqI	GGGAC	2 cut(s)	6, 403
FatI	CATG	5 cut(s)	560, 568, 726, 804, 994
FauI	CCCGC	3 cut(s)	772, 935, 940
FauNDI	CATATG	1 cut(s)	902
FblI	GTMKAC	1 cut(s)	909
Fnu4HI	GCNGC	6 cut(s)	247, 250, 450, 543, 882, 971
FriOI	GRGCYC	1 cut(s)	511
Fsp4HI	GCNGC	6 cut(s)	247, 250, 450, 543, 882, 971
FspBI	CTAG	5 cut(s)	297, 362, 440, 759, 929
GluI	GCNGC	6 cut(s)	247, 250, 450, 543, 882, 971
GsaI	CCCAGC	2 cut(s)	390, 828
GsuI	CTGGAG	5 cut(s)	30, 81, 135, 525, 722
HaeIII	GGCC	1 cut(s)	444
HapII	CCGG	1 cut(s)	575
Hin1II	CATG	5 cut(s)	564, 572, 730, 808, 998
HindIII	AAGCTT	1 cut(s)	1015
HinfI	GANTC	4 cut(s)	8, 92, 462, 783
HpaII	CCGG	1 cut(s)	575
HphI	GGTGA	5 cut(s)	520, 632, 643, 907, 998
Hpy166II	GTNNAC	4 cut(s)	31, 409, 580, 910
Hpy188I	TCNGA	3 cut(s)	516, 587, 1022
Hpy188III	TCNNGA	6 cut(s)	89, 241, 504, 675, 701, 995
Hpy8I	GTNNAC	4 cut(s)	31, 409, 580, 910
HpyAV	CCTTC	8 cut(s)	80, 153, 278, 416, 446, 622, 681, 977
HpyCH4III	ACNGT	4 cut(s)	28, 265, 667, 802
HpyCH4V	TGCA	8 cut(s)	4, 16, 249, 311, 338, 449, 545, 884
HpyF10VI	GCNNNNNNNGC	7 cut(s)	255, 308, 392, 542, 785, 794, 881
HpyF3I	CTNAG	1 cut(s)	136
Hsp92II	CATG	5 cut(s)	564, 572, 730, 808, 998
Kzo9I	GATC	3 cut(s)	202, 209, 378
LmnI	GCTCC	8 cut(s)	145, 181, 287, 350, 506, 587, 794, 839
Lsp1109I	GCAGC	6 cut(s)	233, 261, 461, 529, 868, 957
LweI	GCATC	1 cut(s)	611
MaeI	CTAG	5 cut(s)	297, 362, 440, 759, 929
MaeIII	GTNAC	5 cut(s)	154, 494, 526, 661, 736
MalI	GATC	3 cut(s)	204, 211, 380
MboI	GATC	3 cut(s)	202, 209, 378
MboII	GAAGA	1 cut(s)	992
MhlI	GDGCHC	4 cut(s)	178, 511, 592, 937
MluCI	AATT	4 cut(s)	34, 356, 773, 924
MlyI	GAGTC	2 cut(s)	17, 456
MnlI	CCTC	9 cut(s)	49, 96, 118, 145, 189, 331, 463, 734, 970
MroXI	GAANNNNTTC	1 cut(s)	435
MseI	TTAA	1 cut(s)	810
MslI	CAYNNNNRTG	1 cut(s)	731
MspI	CCGG	1 cut(s)	575
MspR9I	CCNGG	2 cut(s)	162, 171
MvaI	CCWGG	2 cut(s)	162, 171
MwoI	GCNNNNNNNGC	7 cut(s)	255, 308, 392, 542, 785, 794, 881
NdeI	CATATG	1 cut(s)	902
NdeII	GATC	3 cut(s)	202, 209, 378
NlaIII	CATG	5 cut(s)	564, 572, 730, 808, 998
NlaIV	GGNNCC	1 cut(s)	952
NmuCI	GTSAC	3 cut(s)	494, 526, 736
NspI	RCATGY	1 cut(s)	572
PagI	TCATGA	1 cut(s)	994
PceI	AGGCCT	1 cut(s)	444
PciI	ACATGT	1 cut(s)	568
PdmI	GAANNNNTTC	1 cut(s)	435
PfeI	GAWTC	2 cut(s)	92, 783
PinAI	ACCGGT	1 cut(s)	574
PkrI	GCNGC	6 cut(s)	248, 251, 451, 544, 883, 972
PleI	GAGTC	2 cut(s)	16, 456
PpsI	GAGTC	2 cut(s)	16, 456
PscI	ACATGT	1 cut(s)	568
Psp124BI	GAGCTC	1 cut(s)	511
Psp6I	CCWGG	2 cut(s)	160, 169
PspFI	CCCAGC	2 cut(s)	386, 824
PspGI	CCWGG	2 cut(s)	160, 169
PspN4I	GGNNCC	1 cut(s)	952
PspPI	GGNCC	1 cut(s)	869
PstI	CTGCAG	1 cut(s)	251
RsaI	GTAC	2 cut(s)	573, 581
RsaNI	GTAC	2 cut(s)	572, 580
RseI	CAYNNNNRTG	1 cut(s)	731
SacI	GAGCTC	1 cut(s)	511
SaqAI	TTAA	1 cut(s)	810
SatI	GCNGC	6 cut(s)	247, 250, 450, 543, 882, 971
Sau3AI	GATC	3 cut(s)	202, 209, 378
Sau96I	GGNCC	1 cut(s)	869
SchI	GAGTC	2 cut(s)	17, 456
ScrFI	CCNGG	2 cut(s)	162, 171
SduI	GDGCHC	4 cut(s)	178, 511, 592, 937
SfaNI	GCATC	1 cut(s)	611
SfcI	CTRYAG	2 cut(s)	247, 744
SinI	GGWCC	1 cut(s)	869
SmiMI	CAYNNNNRTG	1 cut(s)	731
SmlI	CTYRAG	2 cut(s)	239, 548
SmoI	CTYRAG	2 cut(s)	239, 548
Sse9I	AATT	4 cut(s)	34, 356, 773, 924
SseBI	AGGCCT	1 cut(s)	444
SsiI	CCGC	4 cut(s)	779, 918, 942, 947
SspMI	CTAG	5 cut(s)	297, 362, 440, 759, 929
SstI	GAGCTC	1 cut(s)	511
StuI	AGGCCT	1 cut(s)	444
StyD4I	CCNGG	2 cut(s)	160, 169
StyI	CCWWGG	1 cut(s)	361
TaaI	ACNGT	4 cut(s)	28, 265, 667, 802
TaqI	TCGA	1 cut(s)	488
TasI	AATT	4 cut(s)	34, 356, 773, 924
TatI	WGTACW	1 cut(s)	579
TfiI	GAWTC	2 cut(s)	92, 783
Tru1I	TTAA	1 cut(s)	810
Tru9I	TTAA	1 cut(s)	810
TscAI	CASTG	3 cut(s)	433, 463, 745
TseFI	GTSAC	3 cut(s)	494, 526, 736
TseI	GCWGC	6 cut(s)	246, 249, 449, 542, 881, 970
Tsp45I	GTSAC	3 cut(s)	494, 526, 736
TspDTI	ATGAA	4 cut(s)	361, 697, 863, 1011
TspRI	CASTG	3 cut(s)	433, 463, 745
VpaK11BI	GGWCC	1 cut(s)	869
XapI	RAATTY	1 cut(s)	356
XceI	RCATGY	1 cut(s)	572
XmaJI	CCTAGG	1 cut(s)	361
XmiI	GTMKAC	1 cut(s)	909
XmnI	GAANNNNTTC	1 cut(s)	435
XspI	CTAG	5 cut(s)	297, 362, 440, 759, 929

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.