Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0016679

Physical Location & Seq

Genomic Coordinates Reverse (-)

35851626 .. 35854028

Gene Structure 2403 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00111300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGGACAACAACAATGGCAATGAGGAAATTCCCTCAGCTCCTTCAACTCCAGTAACACCAGGCACTCCTGGTGCTCCTCTCTTTGGTGGGTTCAAGCCAGATCACAGATCAAGTGGGATTGGTAGGAAATCACTTCTCAAGAGCTGCAGCAAATGCTTTACTGTTGATGATTGGGCTTTGGAAGGAGCACTGCCTAAAGCTTTCTGTGCACTACCACCCTCTCCTGTCTCACTTGCAAGAAAGGTGGGAGCTGAATTCCTAGGCACTTTCATACTGATCTTTGCTGGAACAGCAACAGCCATTGTGAACCAAAAGACTGAAGGCACTGAAACACTTTTAGGCCTTGCAGCCTCCACTGGACTCGCTGTTATGATTGTGATTTTATCGACAGGTCACATCTCTGGAGCTCATCTGAACCCTGCTGTCACCATTGCCTTCGCTGCACTCAAGCACTTCTCATGGAAACATGTACCGGTGTACATTGGAGCACAAGTGTTGGCATCTCTGTGTTCTGCGTTTGCCTTGAAGGTGATTTTTCACCCCATAATGGGGGGTGGAGTTACAGTTCCTTCAGGAAGTTATGGTCAGGCTTTTGCTTTGGAGTTCATCATCAGCTTCAACCTCATGTTTGTGGTCACTGCTGTAGCCACCGACACTAGAGCTGAGACAGGGATTCATTATAAATATTTTATGCATGAGGCGAGTCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006820 GO:0006855 GO:0007154 GO:0008150 GO:0008509 GO:0008643 GO:0009605 GO:0009987 GO:0009991 GO:0010036 GO:0015075 GO:0015103 GO:0015144 GO:0015166 GO:0015168 GO:0015204 GO:0015238 GO:0015318 GO:0015698 GO:0015791 GO:0015793 GO:0015840 GO:0015850 GO:0015893 GO:0016020 GO:0016021 GO:0019755 GO:0022804 GO:0022857 GO:0031224 GO:0031226 GO:0031667 GO:0031668 GO:0031669 GO:0034219 GO:0034220 GO:0035445 GO:0042221 GO:0042493 GO:0042886 GO:0042887 GO:0044425 GO:0044459 GO:0044464 GO:0046713 GO:0046715 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0070887 GO:0071496 GO:0071702 GO:0071705 GO:0071918 GO:0071944 GO:0080029 GO:0098656 GO:0098660 GO:0098661 GO:1901618

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

236

Amino Acids

24.71

Weight (kDa)

7.74

Isoelectric Point (pI)

27.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIP	PF00230	76 - 223	1.6e-31	Major intrinsic protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0016679)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80760
fragaria_vesca	FvH4_6g28790
malus_domestica	MD17G1221800.v1.1
prunus_persica	Prupe.3G096600_v2.0.a1
pyrus_communis	pycom17g22580
rosa_chinensis	RchiOBHm_Chr2g0133211
rosa_laevigata	RLG00000019321
rosa_multiflora	Rmu_sc0000886.1_g000005
rosa_roxburghii	Rroxscaffold_2G00111300
rosa_rugosa	Rorug02G0310800
rosa_samantha	Rh2BG368900 Rh2CG346500 Rh2DG385900
rosa_wichuraiana	Rw2G029520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	681
AcsI	RAATTY	2 cut(s)	27, 254
AcuI	CTGAAG	2 cut(s)	339, 555
AfaI	GTAC	2 cut(s)	471, 479
AfiI	CCNNNNNNNGG	4 cut(s)	83, 547, 548, 549
AflIII	ACRYGT	1 cut(s)	466
AgeI	ACCGGT	1 cut(s)	472
AgsI	TTSAA	4 cut(s)	45, 94, 526, 619
AjnI	CCWGG	2 cut(s)	58, 67
AloI	GAACNNNNNNTCC	2 cut(s)	549, 581
AluBI	AGCT	7 cut(s)	38, 144, 200, 251, 407, 615, 662
AluI	AGCT	7 cut(s)	38, 144, 200, 251, 407, 615, 662
Alw21I	GWGCWC	5 cut(s)	76, 190, 211, 409, 490
Alw26I	GTCTC	2 cut(s)	232, 659
Alw44I	GTGCAC	1 cut(s)	207
AoxI	GGCC	1 cut(s)	340
ApaLI	GTGCAC	1 cut(s)	207
ApeKI	GCWGC	4 cut(s)	144, 147, 347, 440
ApoI	RAATTY	2 cut(s)	27, 254
AsiGI	ACCGGT	1 cut(s)	472
AspA2I	CCTAGG	1 cut(s)	259
AsuHPI	GGTGA	3 cut(s)	418, 530, 541
AvrII	CCTAGG	1 cut(s)	259
BaeGI	GKGCMC	1 cut(s)	211
BanII	GRGCYC	1 cut(s)	409
Bbv12I	GWGCWC	5 cut(s)	76, 190, 211, 409, 490
BbvCI	CCTCAGC	1 cut(s)	34
BbvI	GCAGC	4 cut(s)	131, 159, 359, 427
BciT130I	CCWGG	2 cut(s)	60, 69
BcoDI	GTCTC	2 cut(s)	232, 659
BfaI	CTAG	2 cut(s)	260, 657
BfmI	CTRYAG	2 cut(s)	145, 642
BisI	GCNGC	4 cut(s)	145, 148, 348, 441
BlnI	CCTAGG	1 cut(s)	259
BlsI	GCNGC	4 cut(s)	146, 149, 349, 442
Bme1390I	CCNGG	2 cut(s)	60, 69
BmrFI	CCNGG	2 cut(s)	60, 69
BmsI	GCATC	1 cut(s)	509
BpmI	CTGGAG	2 cut(s)	33, 423
Bpu10I	CCTNAGC	1 cut(s)	34
BpuEI	CTTGAG	2 cut(s)	122, 431
BsaJI	CCNNGG	1 cut(s)	259
BsaWI	WCCGGW	1 cut(s)	472
BsaXI	ACNNNNNCTCC	4 cut(s)	477, 507, 549, 579
Bsc4I	CCNNNNNNNGG	4 cut(s)	83, 547, 548, 549
Bse118I	RCCGGY	1 cut(s)	472
Bse1I	ACTGG	2 cut(s)	50, 361
Bse3DI	GCAATG	2 cut(s)	25, 429
BseBI	CCWGG	2 cut(s)	60, 69
BseDI	CCNNGG	1 cut(s)	259
BseLI	CCNNNNNNNGG	4 cut(s)	83, 547, 548, 549
BseMI	GCAATG	2 cut(s)	25, 429
BseMII	CTCAG	2 cut(s)	48, 654
BseNI	ACTGG	2 cut(s)	50, 361
BseRI	GAGGAG	1 cut(s)	66
BseSI	GKGCMC	1 cut(s)	211
BseXI	GCAGC	4 cut(s)	131, 159, 359, 427
BsgI	GTGCAG	1 cut(s)	426
BshFI	GGCC	1 cut(s)	342
BshTI	ACCGGT	1 cut(s)	472
BsiHKAI	GWGCWC	5 cut(s)	76, 190, 211, 409, 490
BsiSI	CCGG	1 cut(s)	473
BslI	CCNNNNNNNGG	4 cut(s)	83, 547, 548, 549
BsmAI	GTCTC	2 cut(s)	232, 659
BsnI	GGCC	1 cut(s)	342
Bsp1286I	GDGCHC	5 cut(s)	76, 190, 211, 409, 490
Bsp1407I	TGTACA	1 cut(s)	477
Bsp143I	GATC	3 cut(s)	100, 107, 276
BspANI	GGCC	1 cut(s)	342
BspCNI	CTCAG	2 cut(s)	47, 655
BspMAI	CTGCAG	1 cut(s)	149
BsrDI	GCAATG	2 cut(s)	25, 429
BsrFI	RCCGGY	1 cut(s)	472
BsrGI	TGTACA	1 cut(s)	477
BsrI	ACTGG	2 cut(s)	50, 361
BssAI	RCCGGY	1 cut(s)	472
BssECI	CCNNGG	1 cut(s)	259
BssMI	GATC	3 cut(s)	100, 107, 276
BssT1I	CCWWGG	1 cut(s)	259
Bst2UI	CCWGG	2 cut(s)	60, 69
Bst4CI	ACNGT	2 cut(s)	163, 565
BstAPI	GCANNNNNTGC	1 cut(s)	153
BstAUI	TGTACA	1 cut(s)	477
BstDEI	CTNAG	2 cut(s)	34, 663
BstKTI	GATC	3 cut(s)	103, 110, 279
BstMAI	GTCTC	2 cut(s)	232, 659
BstMBI	GATC	3 cut(s)	100, 107, 276
BstMWI	GCNNNNNNNGC	4 cut(s)	153, 206, 290, 440
BstNI	CCWGG	2 cut(s)	60, 69
BstNSI	RCATGY	1 cut(s)	470
BstSCI	CCNGG	2 cut(s)	58, 67
BstSFI	CTRYAG	2 cut(s)	145, 642
BstSLI	GKGCMC	1 cut(s)	211
BstV1I	GCAGC	4 cut(s)	131, 159, 359, 427
BsuRI	GGCC	1 cut(s)	342
BtsI	GCAGTG	2 cut(s)	188, 636
BtsIMutI	CAGTG	4 cut(s)	188, 324, 354, 636
Cfr10I	RCCGGY	1 cut(s)	472
Csp6I	GTAC	2 cut(s)	470, 478
CspAI	ACCGGT	1 cut(s)	472
CspCI	CAANNNNNGTGG	2 cut(s)	225, 260
CviAII	CATG	4 cut(s)	459, 467, 625, 695
CviQI	GTAC	2 cut(s)	470, 478
DdeI	CTNAG	2 cut(s)	34, 663
DpnI	GATC	3 cut(s)	102, 109, 278
DpnII	GATC	3 cut(s)	100, 107, 276
Ecl136II	GAGCTC	1 cut(s)	407
Eco130I	CCWWGG	1 cut(s)	259
Eco147I	AGGCCT	1 cut(s)	342
Eco24I	GRGCYC	1 cut(s)	409
Eco53kI	GAGCTC	1 cut(s)	407
Eco57I	CTGAAG	2 cut(s)	339, 555
EcoICRI	GAGCTC	1 cut(s)	407
EcoRI	GAATTC	1 cut(s)	254
EcoRII	CCWGG	2 cut(s)	58, 67
EcoT14I	CCWWGG	1 cut(s)	259
EcoT22I	ATGCAT	1 cut(s)	696
EcoT38I	GRGCYC	1 cut(s)	409
ErhI	CCWWGG	1 cut(s)	259
FaeI	CATG	4 cut(s)	462, 470, 628, 698
FatI	CATG	4 cut(s)	458, 466, 624, 694
Fnu4HI	GCNGC	4 cut(s)	145, 148, 348, 441
FriOI	GRGCYC	1 cut(s)	409
Fsp4HI	GCNGC	4 cut(s)	145, 148, 348, 441
FspBI	CTAG	2 cut(s)	260, 657
GluI	GCNGC	4 cut(s)	145, 148, 348, 441
GsuI	CTGGAG	2 cut(s)	33, 423
HaeIII	GGCC	1 cut(s)	342
HapII	CCGG	1 cut(s)	473
Hin1II	CATG	4 cut(s)	462, 470, 628, 698
HindIII	AAGCTT	1 cut(s)	198
HinfI	GANTC	3 cut(s)	360, 673, 703
HpaII	CCGG	1 cut(s)	473
HphI	GGTGA	3 cut(s)	418, 530, 541
Hpy166II	GTNNAC	3 cut(s)	209, 307, 478
Hpy188I	TCNGA	1 cut(s)	414
Hpy188III	TCNNGA	3 cut(s)	139, 402, 573
Hpy8I	GTNNAC	3 cut(s)	209, 307, 478
HpyAV	CCTTC	6 cut(s)	51, 176, 314, 445, 520, 579
HpyCH4III	ACNGT	2 cut(s)	163, 565
HpyCH4V	TGCA	6 cut(s)	147, 209, 236, 347, 443, 694
HpyF10VI	GCNNNNNNNGC	4 cut(s)	153, 206, 290, 440
HpyF3I	CTNAG	2 cut(s)	34, 663
Hsp92II	CATG	4 cut(s)	462, 470, 628, 698
Kzo9I	GATC	3 cut(s)	100, 107, 276
LmnI	GCTCC	6 cut(s)	43, 79, 185, 248, 404, 485
Lsp1109I	GCAGC	4 cut(s)	131, 159, 359, 427
LweI	GCATC	1 cut(s)	509
MaeI	CTAG	2 cut(s)	260, 657
MaeIII	GTNAC	5 cut(s)	52, 392, 424, 559, 634
MalI	GATC	3 cut(s)	102, 109, 278
MboI	GATC	3 cut(s)	100, 107, 276
MhlI	GDGCHC	5 cut(s)	76, 190, 211, 409, 490
MluCI	AATT	2 cut(s)	27, 254
MlyI	GAGTC	1 cut(s)	354
MnlI	CCTC	7 cut(s)	16, 43, 87, 229, 361, 632, 691
Mph1103I	ATGCAT	1 cut(s)	696
MslI	CAYNNNNRTG	2 cut(s)	505, 629
MspI	CCGG	1 cut(s)	473
MspR9I	CCNGG	2 cut(s)	60, 69
MvaI	CCWGG	2 cut(s)	60, 69
MwoI	GCNNNNNNNGC	4 cut(s)	153, 206, 290, 440
NdeII	GATC	3 cut(s)	100, 107, 276
NlaIII	CATG	4 cut(s)	462, 470, 628, 698
NmuCI	GTSAC	3 cut(s)	392, 424, 634
NsiI	ATGCAT	1 cut(s)	696
NspI	RCATGY	1 cut(s)	470
PceI	AGGCCT	1 cut(s)	342
PciI	ACATGT	1 cut(s)	466
PfeI	GAWTC	1 cut(s)	673
PinAI	ACCGGT	1 cut(s)	472
PkrI	GCNGC	4 cut(s)	146, 149, 349, 442
PleI	GAGTC	1 cut(s)	354
PpsI	GAGTC	1 cut(s)	354
PscI	ACATGT	1 cut(s)	466
PsiI	TTATAA	1 cut(s)	681
Psp124BI	GAGCTC	1 cut(s)	409
Psp6I	CCWGG	2 cut(s)	58, 67
PspGI	CCWGG	2 cut(s)	58, 67
PstI	CTGCAG	1 cut(s)	149
RsaI	GTAC	2 cut(s)	471, 479
RsaNI	GTAC	2 cut(s)	470, 478
RseI	CAYNNNNRTG	2 cut(s)	505, 629
SacI	GAGCTC	1 cut(s)	409
SatI	GCNGC	4 cut(s)	145, 148, 348, 441
Sau3AI	GATC	3 cut(s)	100, 107, 276
SchI	GAGTC	1 cut(s)	354
ScrFI	CCNGG	2 cut(s)	60, 69
SduI	GDGCHC	5 cut(s)	76, 190, 211, 409, 490
SfaNI	GCATC	1 cut(s)	509
SfcI	CTRYAG	2 cut(s)	145, 642
SmiMI	CAYNNNNRTG	2 cut(s)	505, 629
SmlI	CTYRAG	2 cut(s)	137, 446
SmoI	CTYRAG	2 cut(s)	137, 446
Sse9I	AATT	2 cut(s)	27, 254
SseBI	AGGCCT	1 cut(s)	342
SspI	AATATT	1 cut(s)	686
SspMI	CTAG	2 cut(s)	260, 657
SstI	GAGCTC	1 cut(s)	409
StuI	AGGCCT	1 cut(s)	342
StyD4I	CCNGG	2 cut(s)	58, 67
StyI	CCWWGG	1 cut(s)	259
TaaI	ACNGT	2 cut(s)	163, 565
TaqI	TCGA	1 cut(s)	386
TasI	AATT	2 cut(s)	27, 254
TatI	WGTACW	1 cut(s)	477
TfiI	GAWTC	1 cut(s)	673
TscAI	CASTG	4 cut(s)	195, 331, 361, 643
TseFI	GTSAC	3 cut(s)	392, 424, 634
TseI	GCWGC	4 cut(s)	144, 147, 347, 440
Tsp45I	GTSAC	3 cut(s)	392, 424, 634
TspDTI	ATGAA	3 cut(s)	259, 595, 665
TspRI	CASTG	4 cut(s)	195, 331, 361, 643
VneI	GTGCAC	1 cut(s)	207
XapI	RAATTY	2 cut(s)	27, 254
XceI	RCATGY	1 cut(s)	470
XmaJI	CCTAGG	1 cut(s)	259
XspI	CTAG	2 cut(s)	260, 657
Zsp2I	ATGCAT	1 cut(s)	696

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.