Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0016679

Physical Location & Seq

Genomic Coordinates Forward (+)

7309959 .. 7314579

Gene Structure 4621 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G096600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGGACAATAATAATGAGGAAGTTCCATCAGCTCCTTCAACTCCTGTAACACCAGGCACTCCTGGGGCTCCTCTCTTTGGTGGGTTCAAGGCAGATCACAGAAGCAGTGGGATTGGTAGGAAATCACTCCTCAAGAGCTGCAGCAGATGCTTCACTGTTGAAGATTGGGCTTTGGAAGAAGGCACATTGCCTAAAGTTTCTTGTGCTTTGCCTCACCCTCCTGTCTCACTTGCAAGAAAGGTAGGAGCTGAATTTTTGGGCACTTTCATACTGATCTTTGCTGGAACAGCCACAGCCATAGTGAACCAGAAGACACAAGGCACAGAAACCCTCATAGGCCTTGCAGCCTCCACTGGCCTAGCTGTTATGATTGTGATTCTATCAACAGGCCACATCTCTGGGGCCCACCTCAACCCATCTGTCACCATTGCCTTTGCTGCACTGAAGCACTTCTCATGGAAGCATGTGCCAGTTTACGTTGGAGCACAAGTTTTAGCATCAATCTGTGCTGCATTTGCATTGAAAGTGATATTTCACCCCATAATGGGTGGTGGAGTTACAGTTCCTTCAGGAAGCTATGGCCAGGCTTTTGCTTTGGAATTCATTATTAGCTTCAACCTCATGTTTGTTGTCACTGCTGTGGCCACCGACACTAGAGCTGTGGGAGAATTGGCGGGAATCGCGGTGGGAGCAACTGTCATGCTCAACATACTCATAGCTGGGGAAACAACAGGAGCTTCCATGAACCCAGTGAGAACATTAGGGCCAGCCATAGCTGCAAACAACTACAAAGCCATATGGGTCTACCTGACTGCACCATTTCTCGGGGCACTCTTTGGGGCGGGAACTTATACGGCTGTCAAGCTGCCCGAGGAAGATGGTGACCATATTGAAAAGCCTTCAACAAGGAGCTTCAGAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006820 GO:0006855 GO:0007154 GO:0008150 GO:0008509 GO:0008643 GO:0009605 GO:0009987 GO:0009991 GO:0010036 GO:0015075 GO:0015103 GO:0015144 GO:0015166 GO:0015168 GO:0015204 GO:0015238 GO:0015318 GO:0015698 GO:0015791 GO:0015793 GO:0015840 GO:0015850 GO:0015893 GO:0016020 GO:0016021 GO:0019755 GO:0022804 GO:0022857 GO:0031224 GO:0031226 GO:0031667 GO:0031668 GO:0031669 GO:0034219 GO:0034220 GO:0035445 GO:0042221 GO:0042493 GO:0042886 GO:0042887 GO:0044425 GO:0044459 GO:0044464 GO:0046713 GO:0046715 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0070887 GO:0071496 GO:0071702 GO:0071705 GO:0071918 GO:0071944 GO:0080029 GO:0098656 GO:0098660 GO:0098661 GO:1901618

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

308

Amino Acids

31.97

Weight (kDa)

8.34

Isoelectric Point (pI)

30.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016679)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80760
fragaria_vesca	FvH4_6g28790
malus_domestica	MD17G1221800.v1.1
prunus_persica	Prupe.3G096600_v2.0.a1
pyrus_communis	pycom17g22580
rosa_chinensis	RchiOBHm_Chr2g0133211
rosa_laevigata	RLG00000019321
rosa_multiflora	Rmu_sc0000886.1_g000005
rosa_roxburghii	Rroxscaffold_2G00111300
rosa_rugosa	Rorug02G0310800
rosa_samantha	Rh2BG368900 Rh2CG346500 Rh2DG385900
rosa_wichuraiana	Rw2G029520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	804
AccII	CGCG	1 cut(s)	683
AciI	CCGC	3 cut(s)	674, 683, 842
AcoI	YGGCCR	2 cut(s)	580, 642
AcsI	RAATTY	2 cut(s)	251, 599
AcuI	CTGAAG	3 cut(s)	464, 552, 898
AfiI	CCNNNNNNNGG	4 cut(s)	77, 544, 545, 824
AgsI	TTSAA	7 cut(s)	39, 88, 161, 523, 616, 893, 903
AjnI	CCWGG	3 cut(s)	52, 61, 582
AleI	CACNNNNGTG	1 cut(s)	638
AloI	GAACNNNNNNTCC	2 cut(s)	546, 578
Alw21I	GWGCWC	1 cut(s)	487
Alw26I	GTCTC	1 cut(s)	229
Ama87I	CYCGRG	2 cut(s)	824, 869
AoxI	GGCC	7 cut(s)	337, 355, 388, 402, 580, 642, 764
ApaI	GGGCCC	1 cut(s)	406
ApeKI	GCWGC	7 cut(s)	138, 141, 344, 437, 509, 776, 865
ApoI	RAATTY	2 cut(s)	251, 599
Asp700I	GAANNNNTTC	1 cut(s)	449
AspS9I	GGNCC	3 cut(s)	402, 403, 764
AsuHPI	GGTGA	4 cut(s)	206, 415, 527, 893
AvaI	CYCGRG	2 cut(s)	824, 869
BaeGI	GKGCMC	3 cut(s)	263, 406, 832
BalI	TGGCCA	2 cut(s)	582, 644
BanII	GRGCYC	2 cut(s)	70, 406
BbsI	GAAGAC	1 cut(s)	317
Bbv12I	GWGCWC	1 cut(s)	487
BbvI	GCAGC	7 cut(s)	125, 153, 356, 424, 496, 763, 852
BccI	CCATC	3 cut(s)	34, 424, 872
BceAI	ACGGC	1 cut(s)	870
BciT130I	CCWGG	3 cut(s)	54, 63, 584
BcoDI	GTCTC	1 cut(s)	229
BfaI	CTAG	2 cut(s)	359, 654
BfmI	CTRYAG	1 cut(s)	139
BisI	GCNGC	7 cut(s)	139, 142, 345, 438, 510, 777, 866
BlsI	GCNGC	7 cut(s)	140, 143, 346, 439, 511, 778, 867
Bme1390I	CCNGG	3 cut(s)	54, 63, 584
BmeT110I	CYCGRG	2 cut(s)	824, 869
BmgT120I	GGNCC	3 cut(s)	402, 403, 764
BmiI	GGNNCC	3 cut(s)	69, 403, 404
BmrFI	CCNGG	3 cut(s)	54, 63, 584
BmrI	ACTGGG	1 cut(s)	743
BmsI	GCATC	2 cut(s)	137, 506
BmuI	ACTGGG	1 cut(s)	743
BpiI	GAAGAC	1 cut(s)	317
BpuEI	CTTGAG	1 cut(s)	116
BsaJI	CCNNGG	2 cut(s)	62, 870
BsaXI	ACNNNNNCTCC	6 cut(s)	474, 504, 546, 576, 681, 711
Bsc4I	CCNNNNNNNGG	4 cut(s)	77, 544, 545, 824
Bse1I	ACTGG	3 cut(s)	358, 470, 749
Bse3DI	GCAATG	2 cut(s)	185, 426
BseBI	CCWGG	3 cut(s)	54, 63, 584
BseDI	CCNNGG	2 cut(s)	62, 870
BseLI	CCNNNNNNNGG	4 cut(s)	77, 544, 545, 824
BseMI	GCAATG	2 cut(s)	185, 426
BseNI	ACTGG	3 cut(s)	358, 470, 749
BseRI	GAGGAG	2 cut(s)	60, 119
BseSI	GKGCMC	3 cut(s)	263, 406, 832
BseXI	GCAGC	7 cut(s)	125, 153, 356, 424, 496, 763, 852
BseYI	CCCAGC	1 cut(s)	719
BsgI	GTGCAG	2 cut(s)	423, 798
Bsh1236I	CGCG	1 cut(s)	683
BshFI	GGCC	7 cut(s)	339, 357, 390, 404, 582, 644, 766
BsiHKAI	GWGCWC	1 cut(s)	487
BsiHKCI	CYCGRG	2 cut(s)	824, 869
BslI	CCNNNNNNNGG	4 cut(s)	77, 544, 545, 824
BsmAI	GTCTC	1 cut(s)	229
BsnI	GGCC	7 cut(s)	339, 357, 390, 404, 582, 644, 766
BsoBI	CYCGRG	2 cut(s)	824, 869
Bsp120I	GGGCCC	1 cut(s)	402
Bsp1286I	GDGCHC	5 cut(s)	70, 263, 406, 487, 832
Bsp143I	GATC	2 cut(s)	94, 273
BspACI	CCGC	3 cut(s)	674, 683, 842
BspANI	GGCC	7 cut(s)	339, 357, 390, 404, 582, 644, 766
BspFNI	CGCG	1 cut(s)	683
BspLI	GGNNCC	3 cut(s)	69, 403, 404
BspMAI	CTGCAG	1 cut(s)	143
BsrDI	GCAATG	2 cut(s)	185, 426
BsrI	ACTGG	3 cut(s)	358, 470, 749
BssECI	CCNNGG	2 cut(s)	62, 870
BssMI	GATC	2 cut(s)	94, 273
Bst2UI	CCWGG	3 cut(s)	54, 63, 584
Bst4CI	ACNGT	3 cut(s)	157, 562, 697
BstAPI	GCANNNNNTGC	1 cut(s)	147
BstC8I	GCNNGC	1 cut(s)	768
BstEII	GGTNACC	1 cut(s)	881
BstFNI	CGCG	1 cut(s)	683
BstKTI	GATC	2 cut(s)	97, 276
BstMAI	GTCTC	1 cut(s)	229
BstMBI	GATC	2 cut(s)	94, 273
BstMWI	GCNNNNNNNGC	7 cut(s)	147, 287, 437, 515, 680, 689, 776
BstNI	CCWGG	3 cut(s)	54, 63, 584
BstNSI	RCATGY	1 cut(s)	467
BstPI	GGTNACC	1 cut(s)	881
BstSCI	CCNGG	3 cut(s)	52, 61, 582
BstSFI	CTRYAG	1 cut(s)	139
BstSLI	GKGCMC	3 cut(s)	263, 406, 832
BstUI	CGCG	1 cut(s)	683
BstV1I	GCAGC	7 cut(s)	125, 153, 356, 424, 496, 763, 852
BstV2I	GAAGAC	1 cut(s)	317
BstXI	CCANNNNNNTGG	1 cut(s)	398
BsuRI	GGCC	7 cut(s)	339, 357, 390, 404, 582, 644, 766
BtsI	GCAGTG	2 cut(s)	112, 633
BtsIMutI	CAGTG	6 cut(s)	112, 153, 351, 440, 633, 756
Cac8I	GCNNGC	1 cut(s)	768
Cfr13I	GGNCC	3 cut(s)	402, 403, 764
CviAII	CATG	5 cut(s)	456, 464, 622, 700, 742
DpnI	GATC	2 cut(s)	96, 275
DpnII	GATC	2 cut(s)	94, 273
EaeI	YGGCCR	2 cut(s)	580, 642
Eco147I	AGGCCT	1 cut(s)	339
Eco24I	GRGCYC	2 cut(s)	70, 406
Eco57I	CTGAAG	3 cut(s)	464, 552, 898
Eco88I	CYCGRG	2 cut(s)	824, 869
Eco91I	GGTNACC	1 cut(s)	881
EcoO109I	RGGNCCY	1 cut(s)	402
EcoO65I	GGTNACC	1 cut(s)	881
EcoRI	GAATTC	1 cut(s)	599
EcoRII	CCWGG	3 cut(s)	52, 61, 582
EcoT38I	GRGCYC	2 cut(s)	70, 406
FaeI	CATG	5 cut(s)	459, 467, 625, 703, 745
FatI	CATG	5 cut(s)	455, 463, 621, 699, 741
FauI	CCCGC	2 cut(s)	667, 835
FauNDI	CATATG	1 cut(s)	797
FblI	GTMKAC	1 cut(s)	804
Fnu4HI	GCNGC	7 cut(s)	139, 142, 345, 438, 510, 777, 866
FriOI	GRGCYC	2 cut(s)	70, 406
Fsp4HI	GCNGC	7 cut(s)	139, 142, 345, 438, 510, 777, 866
FspBI	CTAG	2 cut(s)	359, 654
GluI	GCNGC	7 cut(s)	139, 142, 345, 438, 510, 777, 866
GsaI	CCCAGC	1 cut(s)	723
HaeIII	GGCC	7 cut(s)	339, 357, 390, 404, 582, 644, 766
Hin1II	CATG	5 cut(s)	459, 467, 625, 703, 745
HinfI	GANTC	2 cut(s)	376, 678
HphI	GGTGA	4 cut(s)	206, 415, 527, 893
Hpy166II	GTNNAC	3 cut(s)	304, 475, 805
Hpy188I	TCNGA	1 cut(s)	917
Hpy188III	TCNNGA	2 cut(s)	133, 570
Hpy8I	GTNNAC	3 cut(s)	304, 475, 805
HpyAV	CCTTC	4 cut(s)	45, 173, 576, 909
HpyCH4III	ACNGT	3 cut(s)	157, 562, 697
HpyCH4IV	ACGT	1 cut(s)	477
HpyCH4V	TGCA	8 cut(s)	141, 233, 344, 440, 512, 518, 779, 815
HpyF10VI	GCNNNNNNNGC	7 cut(s)	147, 287, 437, 515, 680, 689, 776
HpySE526I	ACGT	1 cut(s)	477
Hsp92II	CATG	5 cut(s)	459, 467, 625, 703, 745
Kzo9I	GATC	2 cut(s)	94, 273
LmnI	GCTCC	7 cut(s)	37, 73, 245, 482, 689, 734, 909
Lsp1109I	GCAGC	7 cut(s)	125, 153, 356, 424, 496, 763, 852
LweI	GCATC	2 cut(s)	137, 506
MaeI	CTAG	2 cut(s)	359, 654
MaeII	ACGT	1 cut(s)	477
MaeIII	GTNAC	5 cut(s)	46, 421, 556, 631, 881
MalI	GATC	2 cut(s)	96, 275
MboI	GATC	2 cut(s)	94, 273
MboII	GAAGA	4 cut(s)	173, 188, 322, 887
MhlI	GDGCHC	5 cut(s)	70, 263, 406, 487, 832
MlsI	TGGCCA	2 cut(s)	582, 644
MluCI	AATT	3 cut(s)	251, 599, 668
MluNI	TGGCCA	2 cut(s)	582, 644
MmeI	TCCRAC	1 cut(s)	460
Mox20I	TGGCCA	2 cut(s)	582, 644
MroXI	GAANNNNTTC	1 cut(s)	449
MscI	TGGCCA	2 cut(s)	582, 644
MslI	CAYNNNNRTG	1 cut(s)	638
Msp20I	TGGCCA	2 cut(s)	582, 644
MspR9I	CCNGG	3 cut(s)	54, 63, 584
MvaI	CCWGG	3 cut(s)	54, 63, 584
MvnI	CGCG	1 cut(s)	683
MwoI	GCNNNNNNNGC	7 cut(s)	147, 287, 437, 515, 680, 689, 776
NdeI	CATATG	1 cut(s)	797
NdeII	GATC	2 cut(s)	94, 273
NlaIII	CATG	5 cut(s)	459, 467, 625, 703, 745
NlaIV	GGNNCC	3 cut(s)	69, 403, 404
NmuCI	GTSAC	3 cut(s)	421, 631, 881
NspI	RCATGY	1 cut(s)	467
OliI	CACNNNNGTG	1 cut(s)	638
PceI	AGGCCT	1 cut(s)	339
PdmI	GAANNNNTTC	1 cut(s)	449
PfeI	GAWTC	2 cut(s)	376, 678
PkrI	GCNGC	7 cut(s)	140, 143, 346, 439, 511, 778, 867
Psp6I	CCWGG	3 cut(s)	52, 61, 582
PspEI	GGTNACC	1 cut(s)	881
PspFI	CCCAGC	1 cut(s)	719
PspGI	CCWGG	3 cut(s)	52, 61, 582
PspN4I	GGNNCC	3 cut(s)	69, 403, 404
PspOMI	GGGCCC	1 cut(s)	402
PspPI	GGNCC	3 cut(s)	402, 403, 764
PstI	CTGCAG	1 cut(s)	143
RseI	CAYNNNNRTG	1 cut(s)	638
SatI	GCNGC	7 cut(s)	139, 142, 345, 438, 510, 777, 866
Sau3AI	GATC	2 cut(s)	94, 273
Sau96I	GGNCC	3 cut(s)	402, 403, 764
ScrFI	CCNGG	3 cut(s)	54, 63, 584
SduI	GDGCHC	5 cut(s)	70, 263, 406, 487, 832
SfaNI	GCATC	2 cut(s)	137, 506
SfcI	CTRYAG	1 cut(s)	139
SmiMI	CAYNNNNRTG	1 cut(s)	638
SmlI	CTYRAG	1 cut(s)	131
SmoI	CTYRAG	1 cut(s)	131
Sse9I	AATT	3 cut(s)	251, 599, 668
SseBI	AGGCCT	1 cut(s)	339
SsiI	CCGC	3 cut(s)	674, 683, 842
SspMI	CTAG	2 cut(s)	359, 654
StuI	AGGCCT	1 cut(s)	339
StyD4I	CCNGG	3 cut(s)	52, 61, 582
TaaI	ACNGT	3 cut(s)	157, 562, 697
TaiI	ACGT	1 cut(s)	480
TasI	AATT	3 cut(s)	251, 599, 668
TfiI	GAWTC	2 cut(s)	376, 678
TscAI	CASTG	6 cut(s)	112, 160, 358, 447, 640, 756
TseFI	GTSAC	3 cut(s)	421, 631, 881
TseI	GCWGC	7 cut(s)	138, 141, 344, 437, 509, 776, 865
Tsp45I	GTSAC	3 cut(s)	421, 631, 881
TspDTI	ATGAA	3 cut(s)	256, 592, 758
TspRI	CASTG	6 cut(s)	112, 160, 358, 447, 640, 756
XapI	RAATTY	2 cut(s)	251, 599
XceI	RCATGY	1 cut(s)	467
XmiI	GTMKAC	1 cut(s)	804
XmnI	GAANNNNTTC	1 cut(s)	449
XspI	CTAG	2 cut(s)	359, 654

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.